Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F56 I20 R2
|
1958 |
92.1 |
3575798 |
91.1% |
3257551 |
126.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP006881 |
2,195,955 |
T→C |
G337G (GGA→GGG) |
U712_11005 ← |
3‑dehydroquinate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 2,195,955 | 0 | T | C | 98.6%
| 230.9
/ NA
| 72 | G337G (GGA→GGG) | U712_11005 | 3‑dehydroquinate synthase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (33/38); minor base G (0/1); total (33/39) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CAGTATCTCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGCGTGATCAGCAACTTTTCCTAATTCGTTGAGCACGATAAACTGAATCTTCCCGCCGCGGGTTTTCTTATCATTCATCATACGGTCCAATAGAACCGAAGTTTCCGTCTCATTTTTAATTTGACTTGGATAGCCCAGGCTTATTAGCCA > CP006881/2195832‑2196086
|
cAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCGAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAg < 1:106717/138‑1 (MQ=255)
cAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGa < 1:235658/137‑1 (MQ=255)
cAGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGa < 1:87874/137‑1 (MQ=255)
aGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGc < 3:366308/138‑1 (MQ=255)
aGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGc < 3:284699/138‑1 (MQ=255)
aGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGc < 7:246428/138‑1 (MQ=255)
aGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGc > 4:284699/1‑138 (MQ=255)
aGTATCCCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGc > 8:246428/1‑138 (MQ=255)
cGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATaaa > 1:94298/1‑139 (MQ=255)
ttCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACt > 6:161747/1‑139 (MQ=255)
tAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTc > 5:84581/1‑139 (MQ=255)
tAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTc > 3:28854/1‑139 (MQ=255)
gTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGa > 5:71954/1‑117 (MQ=255)
gTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGa < 6:71954/117‑1 (MQ=255)
gCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGc < 4:287944/116‑1 (MQ=255)
gCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGc > 3:287944/1‑116 (MQ=255)
gCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCccgcc > 7:37723/1‑139 (MQ=255)
tccgcgaattccgcgaatCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCccgccac > 5:410882/1‑137 (MQ=255)
tccgcgaattccgcgaatCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCccgccac > 3:189464/1‑137 (MQ=255)
gcgaattccgcgaatCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACggg > 6:324484/1‑139 (MQ=255)
gcgaattccgcgaatCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACggg > 5:343478/1‑139 (MQ=255)
cgcgaatCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTa < 8:29015/139‑1 (MQ=255)
cgaatCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTAtc < 8:223007/139‑1 (MQ=255)
aatCATCATGATGTCTCCTCCAATCTCCATTTGTTCAGCCAGCTCTCAAGTTAATTTCTTGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAATCTGAATCTTCCCGCCACGGGTTTTCTTAtcat < 8:415987/139‑1 (MQ=255)
aatCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCCTTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTAtcat < 3:340457/139‑1 (MQ=255)
atcatGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTAtcattcat > 8:34876/1‑139 (MQ=255)
tgatgTCTCCTCCAATCGCCATTTGTTCAGCCATCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGCATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa < 6:412547/139‑1 (MQ=255)
tgatgTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa < 5:324484/139‑1 (MQ=255)
tgatgTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa < 4:189464/139‑1 (MQ=255)
tgatgTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa < 4:68638/139‑1 (MQ=255)
gatgTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa < 2:94298/138‑1 (MQ=255)
atgGCTCCTCCAATCGCCATTTGTTCAGCCACCTCTCAAGTTCAGTTCTGGAAAATGTATGAGCAGGAACTTTGCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa < 8:231128/137‑1 (MQ=255)
tgTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACgg < 5:161747/139‑1 (MQ=255)
gTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGt > 4:60894/1‑139 (MQ=255)
ctcctcCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGtt > 5:252034/1‑137 (MQ=255)
tcctccAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAg < 8:244100/83‑1 (MQ=255)
tcctccAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAg > 7:244100/1‑83 (MQ=255)
tcctccAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa > 2:224684/1‑132 (MQ=255)
tcctccAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa > 8:149433/1‑132 (MQ=255)
tcctccAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa < 1:224684/132‑1 (MQ=255)
tcctccAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa < 7:149433/132‑1 (MQ=255)
tcctccAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGttc > 3:153830/1‑136 (MQ=255)
tcctccAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGttc > 3:395418/1‑136 (MQ=255)
tcctccAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTAGCATTCATCATACGGttc > 2:89711/1‑136 (MQ=255)
ctccAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCaa < 2:302167/138‑1 (MQ=255)
aTCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCACGAAAAAGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAAACAACACGCCACCGGAGTTCTAATCATTAATCATACGGTTCAAGAGAAc > 2:135035/1‑139 (MQ=255)
tCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAAcc > 3:360337/1‑139 (MQ=255)
cATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAACCTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAg > 7:2848/1‑139 (MQ=255)
cATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATtcatca > 6:79410/1‑118 (MQ=255)
cATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATtcatca < 1:113325/118‑1 (MQ=255)
cATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATtcatca > 2:113325/1‑118 (MQ=255)
cATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATtcatca < 5:79410/118‑1 (MQ=255)
cATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATtcatca < 3:72663/118‑1 (MQ=255)
cATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATtcatca > 4:72663/1‑118 (MQ=255)
gTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTc < 4:103969/138‑1 (MQ=255)
ttCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCg < 6:38809/139‑1 (MQ=255)
cagccagcTATCAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCAGAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGt < 8:23718/138‑1 (MQ=255)
cAAGTTCATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCttttctgat < 4:28854/139‑6 (MQ=255)
cATTTCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGAc < 8:37723/138‑1 (MQ=255)
ttCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTgg > 7:239548/1‑139 (MQ=255)
ttCTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTg > 7:176453/1‑138 (MQ=255)
cTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGTGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGa < 6:410145/138‑1 (MQ=255)
cTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGa < 6:84581/138‑1 (MQ=255)
cTGGAAAATGTATGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGa < 4:360337/138‑1 (MQ=255)
atgtatgatgaGCAACTTTCGCTAATTCTGTGAGCACATTAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCAGCATACGGTTCAAGAGAAGCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATATCCCAg < 2:313797/134‑1 (MQ=255)
atgtatGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCCTCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAg < 3:19893/134‑1 (MQ=255)
atgtatGATAAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGATCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAg < 5:431359/134‑1 (MQ=255)
tgtatGATCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAgg > 8:28423/5‑139 (MQ=255)
tCAGCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCttttta < 8:2848/139‑1 (MQ=255)
gCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa < 2:354822/72‑1 (MQ=255)
gCAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATa > 1:354822/1‑72 (MQ=255)
cAACTTTCCCTAATTCGTTGAGCACAATAAACTGAATCTTCCCGCCACGGGTTTTCTTATCATTCATCATACGGTTCAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCGTTTTAGCCa > 3:53272/1‑139 (MQ=255)
|
CAGTATCTCGTTCAACTGTAGTTGCTCCGCGAATTCCGCGAATCATCATGATGTCTCCTCCAATCGCCATTTGTTCAGCCAGCTCTCAAGTTCATTTCTGGAAAATGCGTGATCAGCAACTTTTCCTAATTCGTTGAGCACGATAAACTGAATCTTCCCGCCGCGGGTTTTCTTATCATTCATCATACGGTCCAATAGAACCGAAGTTTCCGTCTCATTTTTAATTTGACTTGGATAGCCCAGGCTTATTAGCCA > CP006881/2195832‑2196086
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
