Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F56 I20 R2 1958 92.1 3575798 91.1% 3257551 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,196,156 C→T G270G (GGG→GGA)  U712_11005 ← 3‑dehydroquinate synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,196,1560CT100.0% 289.5 / NA 92G270G (GGG→GGA) U712_110053‑dehydroquinate synthase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (44/48);  total (44/48)

GTCCAATAGAACCGAAGTTTCCGTCTCATTTTTAATTTGACTTGGATAGCCCAGGCTTATTAGCCAACTGACCAAACGTTTCCTGTCCATTTCACAGCCCGCTGTCTTTTCGCTTATATATAAAGCAAACTGCATCCCGAGGGCTACGGCATCACCGTGAGTGATCTGTCCGTATCCATATTCAGCCTCAACGGCATGGCCGAGCGTATGTCCGAAGTTTAAGTAAGCTCTGATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGA  >  CP006881/2196021‑2196287
                                                                                                                                       |                                                                                                                                   
gttcAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCg                                                                                                                                  <  3:410221/136‑1 (MQ=255)
 ttcAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATtcc                                                                                                                                   >  8:357222/3‑137 (MQ=255)
 ttcAAGAGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATtcc                                                                                                                                   >  7:375832/3‑137 (MQ=255)
      gaGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGc                                                                                                                             >  3:247966/2‑138 (MQ=255)
      gaGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCAATCCGAGGGc                                                                                                                             >  7:145441/2‑138 (MQ=255)
       aGAACCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTa                                                                                                                           <  1:181963/139‑1 (MQ=255)
         aaCCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACg                                                                                                                         >  5:346958/1‑139 (MQ=255)
         aaCCGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCGTTTTAGCCCGCTGCCCAAACGGTTTGGGGGCATTTCCCCGCCTACCGGCGTTTCGCGTATATTTAAAGCAAACGGCATTCCGAGGGCTACg                                                                                                                         >  2:314302/1‑139 (MQ=255)
           ccGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAATCAAACTGCATTCCGAGGGCTACGGc                                                                                                                       >  6:335280/1‑139 (MQ=255)
           ccGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACgg                                                                                                                        >  3:411308/1‑138 (MQ=255)
           ccGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACgg                                                                                                                        >  1:270812/1‑138 (MQ=255)
           ccGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACgg                                                                                                                        >  7:219476/1‑138 (MQ=255)
           ccGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGc                                                                                                                       >  7:413273/1‑139 (MQ=255)
           ccGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGc                                                                                                                       <  8:65395/139‑1 (MQ=255)
           ccGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGATTATATATAAAGCAAACTGCATTCCGAGGGCTACgg                                                                                                                        >  8:250270/1‑138 (MQ=255)
           ccGAAGTTTCCGTCTCTTTTCTGATTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTAACAGCCTACAGTCTTTTAGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACgg                                                                                                                        >  4:390644/1‑138 (MQ=255)
              aaGTTTCCGTCTCGTTTCTGATTTGAATTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTATGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGAATTCCGAGGGCTACGGCAt                                                                                                                     >  6:258970/1‑138 (MQ=255)
                             ttgtgaTTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGAt                                                                                                        <  1:273295/131‑1 (MQ=255)
                             ttctgaTTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGAt                                                                                                        <  7:429580/131‑1 (MQ=255)
                             ttctgaTTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGAt                                                                                                        <  6:346958/131‑1 (MQ=255)
                             ttctgaTTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGAt                                                                                                        <  7:357222/131‑1 (MQ=255)
                                  aTTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTTCGGCATCACCGTGAGTGATCTgcc                                                                                                   <  8:145441/136‑3 (MQ=255)
                                  aTTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTgcc                                                                                                   <  7:368071/136‑3 (MQ=255)
                                  aTTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTgcc                                                                                                   <  5:335280/136‑3 (MQ=255)
                                  aTTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTgcc                                                                                                   <  1:89711/136‑3 (MQ=255)
                                  aTTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTgcc                                                                                                   <  4:247966/136‑3 (MQ=255)
                                  aTTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGccca                                                                                                 <  2:270812/138‑2 (MQ=255)
                                  aTTTGACTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGccca                                                                                                 <  3:2036/138‑2 (MQ=255)
                                       aCTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATtcc                                                                                                                                   <  2:237715/99‑1 (MQ=255)
                                       aCTTGGATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATtcc                                                                                                                                   >  1:237715/1‑99 (MQ=255)
                                            gATAACCCAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTc                                                                                      >  3:228328/1‑139 (MQ=255)
                                                 cccAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGCCTACGGCATCACCTTGAGTGATCTGCCCATATCCATATTCCGCCt                                                                                 >  1:184168/1‑139 (MQ=255)
                                                  ccAGGCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTc                                                                                <  3:93545/139‑1 (MQ=255)
                                                      gCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCg                                                                                                                                  >  1:186640/1‑85 (MQ=255)
                                                      gCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCg                                                                                                                                  <  2:186640/85‑1 (MQ=255)
                                                      gCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTgcc                                                                                                   <  2:196273/116‑3 (MQ=255)
                                                      gCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATGTCCATATTCCGCCTCAACg                                                                            >  5:150431/1‑139 (MQ=255)
                                                      gCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACg                                                                            >  2:252878/1‑139 (MQ=255)
                                                      gCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCACATATCCATATTCCGCCTCAACg                                                                            >  8:250403/1‑139 (MQ=255)
                                                      gCTTTTTAGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATAACCGTGAGTGATCTgcc                                                                                                   >  1:196273/1‑114 (MQ=255)
                                                          tttaGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGc                                                                          <  3:89703/136‑1 (MQ=255)
                                                          tttaGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGc                                                                          <  1:195551/136‑1 (MQ=255)
                                                          tttaGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCa                                                                         <  1:304196/137‑1 (MQ=255)
                                                          tttaGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCa                                                                         <  5:66415/137‑1 (MQ=255)
                                                           ttaGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCg                                                                                                                                  >  5:211855/1‑80 (MQ=255)
                                                           ttaGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCg                                                                                                                                  <  6:211855/80‑1 (MQ=255)
                                                           ttaGCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATg                                                                       >  4:110314/1‑139 (MQ=255)
                                                              gCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGcc                                                                    <  8:219476/139‑1 (MQ=255)
                                                              gCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGcc                                                                    <  6:35343/139‑1 (MQ=255)
                                                              gCCAGCTGACCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGcc                                                                    <  2:43975/139‑1 (MQ=255)
                                                                      aCCAAACGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGt                                                              <  5:900/137‑1 (MQ=255)
                                                                         aaaCGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATgcc                                                         <  7:26394/139‑3 (MQ=255)
                                                                           aCGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGccca                                                       <  1:252878/139‑2 (MQ=255)
                                                                           aCGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGccca                                                       <  3:261995/139‑2 (MQ=255)
                                                                           aCGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGccca                                                       <  8:375647/139‑2 (MQ=255)
                                                                           aCGTTTTCTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGccca                                                       <  8:375832/139‑2 (MQ=255)
                                                                                ttcTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGccca                                                                                                 >  7:408572/3‑91 (MQ=255)
                                                                                ttcTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGccca                                                                                                 <  8:408572/90‑2 (MQ=255)
                                                                                ttcTGTCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGCCATGGCCGAGCGTATGCCCAAAGtt                                                  >  6:113433/3‑139 (MQ=255)
                                                                                     tCCATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTtaag                                              >  3:413560/1‑138 (MQ=255)
                                                                                       cATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATTGCCGAGCGTATGCCCAAAGTTtaagta                                            <  7:250403/138‑1 (MQ=255)
                                                                                       cATTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTtaagtaa                                           <  7:28423/139‑1 (MQ=255)
                                                                                        aTTTCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTtaagtaag                                          <  5:258970/139‑1 (MQ=255)
                                                                                          ttCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATAT‑CATATTCCGCCTCAACGGCATGGcc                                                                    <  5:197462/110‑1 (MQ=255)
                                                                                          ttCACAGCCTACAGTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATAT‑CATATTCCGCCTCAACGGCATGGcc                                                                    >  6:197462/1‑110 (MQ=255)
                                                                                                 cctacagTCTTTTCGCTTATATATAAAGCAAACTGCATTACGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATcc                                 >  7:373918/7‑139 (MQ=255)
                                                                                                  ctacagTCTTTTCGCTTATATATAAAGCTATCTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCAAATTCCGCATCAACGGCATGGCCGAGCGTATGCCCAAATTTTAAGTAAGCTCTTATccc                                <  5:412346/134‑1 (MQ=255)
                                                                                                    acagTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCct                              >  3:8185/4‑139 (MQ=255)
                                                                                                      agTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGt                                                              <  3:205613/104‑1 (MQ=255)
                                                                                                      agTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGt                                                              >  4:205613/2‑105 (MQ=255)
                                                                                                      agTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCctct                            >  6:165591/2‑139 (MQ=255)
                                                                                                      agTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCctct                            >  4:85729/2‑139 (MQ=255)
                                                                                                       gTCTTTTCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCtctt                           <  3:162666/139‑1 (MQ=255)
                                                                                                          ttttCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTcttctt                        >  4:93122/1‑139 (MQ=255)
                                                                                                           tttCGCTTATATATAAAGCATACTGCATTCCGCGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCttt                       >  4:226689/1‑139 (MQ=255)
                                                                                                           tttCGCTTATATATAAAGCAACCTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCCTATTCCGCCTCACCGGCATGGCCGCGCGTATGCCCACAGGTTACGTACGCTCTTAGCCCCTCGTCttt                       >  4:324714/1‑139 (MQ=255)
                                                                                                           tttCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGTGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCttt                       >  5:93915/1‑139 (MQ=255)
                                                                                                           tttCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGATTAAGTAAGATCTTATACCCTCTTAttt                       >  5:317546/1‑139 (MQ=255)
                                                                                                             tCGCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCttttt                     >  5:364601/1‑139 (MQ=255)
                                                                                                             tCGCTTATATATAAAGCAAACTGAATTCCGAGGGCTACGGCATCACAGTGAGAGATCTGCACATATCCACATTACGCCACAACGGCATGGCCGAGCGTATGCGCAAAGTGTAAGAAAGCTCTTAACCCCTCTTCtgttt                     >  6:412346/1‑139 (MQ=255)
                                                                                                               gCTTATATATAAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCa                   <  4:129595/139‑1 (MQ=255)
                                                                                                                  tatatataAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGc                                                                                   <  2:53109/72‑1 (MQ=255)
                                                                                                                  tatatataAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGc                                                                                   >  1:53109/1‑72 (MQ=255)
                                                                                                                    tatataAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGTCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCctg              <  8:417312/139‑1 (MQ=255)
                                                                                                                    tatataAAGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCctg              >  7:184616/1‑139 (MQ=255)
                                                                                                                          aaGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAAc        <  3:390644/139‑1 (MQ=255)
                                                                                                                          aaGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAAc        <  7:250270/139‑1 (MQ=255)
                                                                                                                           aGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGCTCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAAc        >  2:147245/1‑138 (MQ=255)
                                                                                                                           aGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCa                                                                         >  7:50456/1‑73 (MQ=255)
                                                                                                                           aGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCa                                                                         <  8:50456/73‑1 (MQ=255)
                                                                                                                           aGCAAACTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTAATCCTGCTGAACg       >  7:420745/1‑139 (MQ=255)
                                                                                                                                aCTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGa  <  1:231931/139‑1 (MQ=255)
                                                                                                                                aCTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGa  >  4:170242/1‑139 (MQ=255)
                                                                                                                                aCTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGa  <  3:198445/139‑1 (MQ=255)
                                                                                                                                aCTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCTCTTATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGa  <  3:110314/139‑1 (MQ=255)
                                                                                                                                aCTGCATTCCGAGGGCTACGGCATCACCGTGAGTGATCTGCCCATATCCATATTCCGCCTCAACGGCATGGCCGAGCGTATGCCCAAAGTTTAAGTAAGCACTTAACCCCTCTTCTTTTTCAACCTGCTGAACGACAGa  >  6:173907/1‑139 (MQ=255)
                                                                                                                                       |                                                                                                                                   
GTCCAATAGAACCGAAGTTTCCGTCTCATTTTTAATTTGACTTGGATAGCCCAGGCTTATTAGCCAACTGACCAAACGTTTCCTGTCCATTTCACAGCCCGCTGTCTTTTCGCTTATATATAAAGCAAACTGCATCCCGAGGGCTACGGCATCACCGTGAGTGATCTGTCCGTATCCATATTCAGCCTCAACGGCATGGCCGAGCGTATGTCCGAAGTTTAAGTAAGCTCTGATCCCCTCTTCTTTTTCATCCTGCTGAACGACAGA  >  CP006881/2196021‑2196287

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A