Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F56 I20 R2 1958 92.1 3575798 91.1% 3257551 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,196,591 A→G F125F (TTT→TTC)  U712_11005 ← 3‑dehydroquinate synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,196,5910AG100.0% 337.0 / NA 102F125F (TTT→TTC) U712_110053‑dehydroquinate synthase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (53/49);  total (53/49)

Only 100 of 105 total aligned reads displayed.

CAGGAAGTCTGTATCGTAGAGCACGGCCTTCGGCTGATAAAATGCACCGATTAGATTTTTTCCGAGCGGATGGTTCACGGCTACCTTTCCTCCGACTGCACTGTCATGCGCCAAAAGCGTCGTAGGCATTTGGATAAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCTCCTACAACACCGCCACCGAACGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAGTTTTGTGTACA  >  CP006881/2196456‑2196724
                                                                                                                                       |                                                                                                                                     
cAGGAAATCTGTATCATAGATCACGGCTTTCGGCTGATAAAACGCACCGAATAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATgaaa                                                                                                                                    >  4:220272/1‑139 (MQ=255)
cAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATgaaa                                                                                                                                    >  2:242351/1‑139 (MQ=255)
cAGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATgaaa                                                                                                                                    >  8:440742/1‑139 (MQ=255)
 aGGAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAAt                                                                                                                                   <  3:324714/139‑1 (MQ=255)
   gAAATCTGTATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCa                                                                                                                                 <  1:368039/139‑1 (MQ=255)
           tATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCcgcg                                                                                                                         >  2:426510/1‑139 (MQ=255)
           tATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCcgcg                                                                                                                         >  7:249312/1‑139 (MQ=255)
           tATCATAGAGCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGATACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCcg                                                                                                                           <  8:432426/137‑1 (MQ=255)
                  gagCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATaa                                                                                                                    >  1:438202/1‑137 (MQ=255)
                   agCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAg                                                                                                                 >  7:273519/1‑139 (MQ=255)
                   agCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAg                                                                                                                 >  2:253793/1‑139 (MQ=255)
                   agCACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAg                                                                                                                 >  8:62294/1‑139 (MQ=255)
                     cACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAATCGGATGCTTCACGGCTACTTATCCTCCGCCTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCTTTTGGATGAAATCAATGACGAGCATAAAAGTg                                                                                                               >  7:202528/1‑139 (MQ=255)
                     cACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTg                                                                                                               >  2:21817/1‑139 (MQ=255)
                     cACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTg                                                                                                               >  6:135540/1‑139 (MQ=255)
                     cACGGCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTg                                                                                                               >  8:165713/1‑139 (MQ=255)
                       cGGCTTTAGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTgg                                                                                                              >  8:102816/1‑138 (MQ=255)
                        ggCTTTCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTA‑CTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAg                                                                                                           >  8:216079/1‑139 (MQ=255)
                             tCGGCTGATAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCca                                                                                                        >  4:214099/1‑138 (MQ=255)
                             tCGGCTGATAAAACGCACCGATTAGATTTTTTCAAAGCGGATGGTTCACGGATACTTTTCCTCCGACTGCGCTGTCATGCGCAAAGAGCGTCGTATGCATTTGGATGAAATCAATGCCGAGCATAAAAGTGGAAGCca                                                                                                        >  8:214957/1‑138 (MQ=255)
                                    ataataCGCACAGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTTCTTTTCCTCCGAGTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGATATCAATGCCGCGCTTAAAAGTGGCAGCCACaaaag                                                                                                  <  8:202528/137‑2 (MQ=255)
                                    aTAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATg                                                                                                                              <  6:158118/109‑1 (MQ=255)
                                    aTAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATg                                                                                                                              >  5:158118/1‑109 (MQ=255)
                                    aTAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCg                                                                                                >  7:133392/1‑139 (MQ=255)
                                    aTAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCg                                                                                                >  5:126798/1‑139 (MQ=255)
                                    aTAAAACGCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCg                                                                                                >  8:25835/1‑139 (MQ=255)
                                        aacgCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCaa                                                                                            <  7:260560/136‑1 (MQ=255)
                                         acgCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGc                                                                                              >  7:28805/3‑136 (MQ=255)
                                          ctcACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGTCTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa                                                                                          <  6:422185/137‑1 (MQ=255)
                                          cgCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCTCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa                                                                                          <  4:184973/138‑1 (MQ=255)
                                          cgCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa                                                                                          <  7:21880/138‑1 (MQ=255)
                                          cgCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa                                                                                          <  6:370104/138‑1 (MQ=255)
                                          cgCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa                                                                                          <  1:426510/138‑1 (MQ=255)
                                          cgCACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGGAGGCATTTGGATGAAATCAAAGGCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa                                                                                          <  6:219837/138‑1 (MQ=255)
                                          cgCAACGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa                                                                                          <  7:214957/138‑1 (MQ=255)
                                            cACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGAtc                                                                                        <  7:354896/139‑1 (MQ=255)
                                            cACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGAtc                                                                                        <  8:54104/139‑1 (MQ=255)
                                            cACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGAtc                                                                                        <  7:102816/139‑1 (MQ=255)
                                            cACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGAtc                                                                                        <  8:408987/139‑1 (MQ=255)
                                            cACCGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGAtc                                                                                        <  1:242351/139‑1 (MQ=255)
                                            cACCGATTAGATTATTTCCAAGCGGATGGTTAACGGCTACTTTTCCTCCGACTGAGCTGTCATGCGCCAAGAGAGTAGTATGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACAGGCAAGAtc                                                                                        <  2:235481/139‑1 (MQ=255)
                                              ccGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAACACCGGCAAGAtccc                                                                                      >  5:37708/1‑137 (MQ=255)
                                              ccGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGAtccc                                                                                      >  2:113891/1‑137 (MQ=255)
                                              ccGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCGCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCTTTTGGATGAAATCAATGCCGCGCTTAAAAGTGGCAGCCACAACACCGGCAAGAtccc                                                                                      >  8:269711/1‑137 (MQ=255)
                                               cGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATcccc                                                                                     <  7:143734/139‑1 (MQ=255)
                                                    aGATTTTTTCCAAGCGGATGGTTCACGGCTA‑CTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTacaa                                                                                <  7:216079/138‑1 (MQ=255)
                                                       ttttttCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAacac                                                                             >  6:77674/1‑139 (MQ=255)
                                                           ttCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGcc                                                                         >  7:142508/1‑139 (MQ=255)
                                                             ccaaGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTCCCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCa                                                                        <  2:438202/135‑1 (MQ=255)
                                                                aGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa                                                                                          <  4:433942/117‑1 (MQ=255)
                                                                aGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa                                                                                          >  3:433942/1‑117 (MQ=255)
                                                                     aTGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAAtgcg                                                               <  5:399022/139‑1 (MQ=255)
                                                                       ggTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCga                                                              <  1:380891/138‑1 (MQ=255)
                                                                        gTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCgat                                                             <  7:408753/138‑1 (MQ=255)
                                                                         ttCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCgatga                                                           <  1:289843/139‑1 (MQ=255)
                                                                         ttCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCgatga                                                           <  8:379374/139‑1 (MQ=255)
                                                                         ttCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCgatga                                                           <  7:127623/139‑1 (MQ=255)
                                                                               gCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATg                                                     <  3:214099/139‑1 (MQ=255)
                                                                                   cttttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa                                                                                          >  6:115497/3‑98 (MQ=255)
                                                                                   cttttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa                                                                                          <  5:115497/96‑1 (MQ=255)
                                                                                   cttttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTCCACCACCGCCCCCGAAGGCGATGATGCATgag                                                   >  7:175879/3‑137 (MQ=255)
                                                                                   cttttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATgag                                                   >  4:89521/3‑137 (MQ=255)
                                                                                   cttttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATgag                                                   >  2:280845/3‑137 (MQ=255)
                                                                                   cttttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATgag                                                   >  7:209444/3‑137 (MQ=255)
                                                                                    ttttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATgaggag                                                <  1:280845/138‑1 (MQ=255)
                                                                                      ttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATgaggag                                                <  7:62294/137‑1 (MQ=255)
                                                                                                 gcgcTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGa                                    >  7:21420/4‑138 (MQ=255)
                                                                                                  cgcTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGcc                                                                                                                            >  8:122948/3‑49 (MQ=255)
                                                                                                  cgcTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGcc                                                                                                                            <  7:122948/47‑1 (MQ=255)
                                                                                                  cgcTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCCCCGAATGCGATGATGCATGAGGAGCGATCCATATGaa                                   >  1:61160/3‑138 (MQ=255)
                                                                                                  cgcTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGaa                                   >  6:375359/3‑138 (MQ=255)
                                                                                                  cgcTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCCCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGaa                                   >  6:96951/3‑138 (MQ=255)
                                                                                                     tGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACg                               <  8:249312/139‑1 (MQ=255)
                                                                                                            cgcCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCt                        >  8:177498/1‑139 (MQ=255)
                                                                                                             gcCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCtt                       <  7:165713/139‑1 (MQ=255)
                                                                                                             gcCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGGGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCtt                       <  1:253793/139‑1 (MQ=255)
                                                                                                               cAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCa                     <  8:28805/139‑1 (MQ=255)
                                                                                                                 agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAACACCGCCAAGATCCCCTACAACACCCCCACCGAATGCGATGATGCATGAGGAGCGATCCAAATGAAAACGAATCGCTTCAct                   >  4:114398/3‑139 (MQ=255)
                                                                                                                 agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCAt                                                      <  7:99557/102‑1 (MQ=255)
                                                                                                                 agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCAct                   >  3:79396/3‑139 (MQ=255)
                                                                                                                 agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCAct                   >  5:107963/3‑139 (MQ=255)
                                                                                                                 agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCAct                   <  5:135540/137‑1 (MQ=255)
                                                                                                                 agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCAct                   >  8:171432/3‑139 (MQ=255)
                                                                                                                 agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGAGATCCATATGAAAACGAATCGCTTCAct                   >  7:425750/3‑139 (MQ=255)
                                                                                                                      gtcgtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCa              <  1:21817/139‑1 (MQ=255)
                                                                                                                       tcgtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa                                                                                          <  6:114273/62‑1 (MQ=255)
                                                                                                                       tcgtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGa                                                                                          >  5:114273/1‑62 (MQ=255)
                                                                                                                       tcgtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGaa                             >  8:121582/1‑123 (MQ=255)
                                                                                                                       tcgtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGaa                             <  7:121582/123‑1 (MQ=255)
                                                                                                                       tcgtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCaa             >  7:316763/1‑138 (MQ=255)
                                                                                                                         gtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTTGCATCCACAAAACCGGCAAGATACCCGACCACACCGCCACCGAATGCGATGATTCATGAGGAGCGATCCATATTAAAACGAATCGCTTCACTCTTCAAtt           >  8:272765/1‑139 (MQ=255)
                                                                                                                         gtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAAtt           <  7:177498/139‑1 (MQ=255)
                                                                                                                         gtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAAtt           <  4:141528/139‑1 (MQ=255)
                                                                                                                            ggCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAAtttt         <  2:217526/138‑1 (MQ=255)
                                                                                                                               aTTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCAACAAATGCGATGATGCATCAGGAGCGATACATATAAAAACGAAACGCTTAACTCTGCAATTTtgtg      >  3:76172/1‑138 (MQ=255)
                                                                                                                                tttGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTa    >  7:128876/1‑139 (MQ=255)
                                                                                                                                 ttGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGCGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTa    >  1:166616/1‑138 (MQ=255)
                                                                                                                                  tGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCg                                              >  7:69582/1‑95 (MQ=255)
                                                                                                                                  tGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCg                                              <  8:69582/95‑1 (MQ=255)
                                                                                                                                  tGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGAGGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACa  >  3:440501/1‑139 (MQ=255)
                                                                                                                                       |                                                                                                                                     
CAGGAAGTCTGTATCGTAGAGCACGGCCTTCGGCTGATAAAATGCACCGATTAGATTTTTTCCGAGCGGATGGTTCACGGCTACCTTTCCTCCGACTGCACTGTCATGCGCCAAAAGCGTCGTAGGCATTTGGATAAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCTCCTACAACACCGCCACCGAACGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAGTTTTGTGTACA  >  CP006881/2196456‑2196724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A