Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F56 I20 R2 1958 92.1 3575798 91.1% 3257551 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,196,639 T→C G109G (GGA→GGG)  U712_11005 ← 3‑dehydroquinate synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,196,6390TC100.0% 237.9 / NA 72G109G (GGA→GGG) U712_110053‑dehydroquinate synthase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (34/38);  total (34/38)

CGATTAGATTTTTTCCGAGCGGATGGTTCACGGCTACCTTTCCTCCGACTGCACTGTCATGCGCCAAAAGCGTCGTAGGCATTTGGATAAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCTCCTACAACACCGCCACCGAACGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAGTTTTGTGTACATGTCCATGGATTTCGCCTGCTCTCCGCTCGGCACCGTCACTTTTT  >  CP006881/2196503‑2196769
                                                                                                                                        |                                                                                                                                  
cGATTAGATTTTTTCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATcccc                                                                                                                                  <  7:143734/139‑1 (MQ=255)
     aGATTTTTTCCAAGCGGATGGTTCACGGCTA‑CTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTacaa                                                                                                                             <  7:216079/138‑1 (MQ=255)
        ttttttCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAacac                                                                                                                          >  6:77674/1‑139 (MQ=255)
            ttCCAAGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGcc                                                                                                                      >  7:142508/1‑139 (MQ=255)
              ccaaGCGGATGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTCCCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCa                                                                                                                     <  2:438202/135‑1 (MQ=255)
                      aTGGTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAAtgcg                                                                                                            <  5:399022/139‑1 (MQ=255)
                        ggTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCga                                                                                                           <  5:385921/138‑1 (MQ=255)
                        ggTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCga                                                                                                           <  1:380891/138‑1 (MQ=255)
                         gTTCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCgat                                                                                                          <  7:408753/138‑1 (MQ=255)
                          ttCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCgatga                                                                                                        <  8:379374/139‑1 (MQ=255)
                          ttCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCgatga                                                                                                        <  7:127623/139‑1 (MQ=255)
                          ttCACGGCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCgatga                                                                                                        <  1:289843/139‑1 (MQ=255)
                                gCTACTTTTCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATg                                                                                                  <  3:214099/139‑1 (MQ=255)
                                    cttttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTCCACCACCGCCCCCGAAGGCGATGATGCATgag                                                                                                >  7:175879/3‑137 (MQ=255)
                                    cttttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATgag                                                                                                >  4:89521/3‑137 (MQ=255)
                                    cttttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATgag                                                                                                >  7:209444/3‑137 (MQ=255)
                                    cttttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATgag                                                                                                >  2:280845/3‑137 (MQ=255)
                                     ttttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATgaggag                                                                                             <  1:280845/138‑1 (MQ=255)
                                       ttCCTCCGACTGCGCTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATgaggag                                                                                             <  7:62294/137‑1 (MQ=255)
                                                  gcgcTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGa                                                                                 >  7:21420/4‑138 (MQ=255)
                                                   cgcTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCCCCGAATGCGATGATGCATGAGGAGCGATCCATATGaa                                                                                >  1:61160/3‑138 (MQ=255)
                                                   cgcTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGaa                                                                                >  6:375359/3‑138 (MQ=255)
                                                   cgcTGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCCCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGaa                                                                                >  6:96951/3‑138 (MQ=255)
                                                      tGTCATGCGCCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACg                                                                            <  8:249312/139‑1 (MQ=255)
                                                             cgcCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCt                                                                     >  8:177498/1‑139 (MQ=255)
                                                              gcCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCtt                                                                    <  7:165713/139‑1 (MQ=255)
                                                              gcCAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGGGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCtt                                                                    <  1:253793/139‑1 (MQ=255)
                                                                cAAGAGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCa                                                                  <  8:28805/139‑1 (MQ=255)
                                                                  agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAACACCGCCAAGATCCCCTACAACACCCCCACCGAATGCGATGATGCATGAGGAGCGATCCAAATGAAAACGAATCGCTTCAct                                                                >  4:114398/3‑139 (MQ=255)
                                                                  agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCAt                                                                                                   >  8:99557/3‑104 (MQ=255)
                                                                  agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCAt                                                                                                   <  7:99557/102‑1 (MQ=255)
                                                                  agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCAct                                                                >  8:171432/3‑139 (MQ=255)
                                                                  agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCAct                                                                >  3:79396/3‑139 (MQ=255)
                                                                  agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCAct                                                                >  5:107963/3‑139 (MQ=255)
                                                                  agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCAct                                                                <  5:135540/137‑1 (MQ=255)
                                                                  agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGAGATCCATATGAAAACGAATCGCTTCAct                                                                >  7:425750/3‑139 (MQ=255)
                                                                  agaGCGTCGTAGGCATTTGGATGAAATCAATGCCGAGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCCct                                                                >  7:168896/3‑139 (MQ=255)
                                                                       gtcgtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCa                                                           <  1:21817/139‑1 (MQ=255)
                                                                        tcgtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGaa                                                                          <  7:121582/123‑1 (MQ=255)
                                                                        tcgtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGaa                                                                          >  8:121582/1‑123 (MQ=255)
                                                                        tcgtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCaa                                                          >  7:316763/1‑138 (MQ=255)
                                                                          gtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTTGCATCCACAAAACCGGCAAGATACCCGACCACACCGCCACCGAATGCGATGATTCATGAGGAGCGATCCATATTAAAACGAATCGCTTCACTCTTCAAtt                                                        >  8:272765/1‑139 (MQ=255)
                                                                          gtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAAtt                                                        <  7:177498/139‑1 (MQ=255)
                                                                          gtAGGCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAAtt                                                        <  4:141528/139‑1 (MQ=255)
                                                                             ggCATTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAAtttt                                                      <  2:217526/138‑1 (MQ=255)
                                                                                aTTTGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCAACAAATGCGATGATGCATCAGGAGCGATACATATAAAAACGAAACGCTTAACTCTGCAATTTtgtg                                                   >  3:76172/1‑138 (MQ=255)
                                                                                 tttGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTa                                                 >  7:128876/1‑139 (MQ=255)
                                                                                  ttGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGCGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTa                                                 >  1:166616/1‑138 (MQ=255)
                                                                                   tGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCg                                                                                           >  7:69582/1‑95 (MQ=255)
                                                                                   tGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCg                                                                                           <  8:69582/95‑1 (MQ=255)
                                                                                   tGGATGAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGAGGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACa                                               >  3:440501/1‑139 (MQ=255)
                                                                                         aaaTCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCa                                         <  6:126798/139‑1 (MQ=255)
                                                                                          aaTCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCa                                         <  8:21420/138‑1 (MQ=255)
                                                                                           aTCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATg                                       >  6:309372/1‑139 (MQ=255)
                                                                                              aaTGCCGCGCATAAAAGTCGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGAt                                    <  7:440742/139‑1 (MQ=255)
                                                                                                    gcgcATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTAc                                                >  1:114290/1‑121 (MQ=255)
                                                                                                    gcgcATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTAc                                                <  2:114290/121‑1 (MQ=255)
                                                                                                    gcgcATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGcc                              <  8:209444/139‑1 (MQ=255)
                                                                                                     cgcATAAAAGTGGCAGCCACAAACCCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCt                             <  8:175879/139‑1 (MQ=255)
                                                                                                     cgcATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCt                             >  7:222674/1‑139 (MQ=255)
                                                                                                     cgcATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCt                             >  8:1719/1‑139 (MQ=255)
                                                                                                     cgcATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCt                             >  8:197165/1‑139 (MQ=255)
                                                                                                      gcATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCa                                         <  8:19544/126‑1 (MQ=255)
                                                                                                      gcATAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCa                                         >  7:19544/1‑126 (MQ=255)
                                                                                                        aTAAAAGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGct                          <  3:89521/139‑1 (MQ=255)
                                                                                                           taaGTGGCAGCCACAAAACCGGCAAGATCCCCTACCACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCCTATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGctct                        <  7:190281/137‑1 (MQ=255)
                                                                                                           aaaGTGGCAGCCCCAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGctct                        <  8:168896/138‑1 (MQ=255)
                                                                                                           aaaGTGGCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGctct                        <  7:171432/138‑1 (MQ=255)
                                                                                                                 gCAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCg                 >  5:388453/1‑139 (MQ=255)
                                                                                                                  cAGCCACAAAACCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCgg                <  6:388453/139‑1 (MQ=255)
                                                                                                                         aaacCCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGAGGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTc         <  8:273519/139‑1 (MQ=255)
                                                                                                                         aaaaCCGGCAAGATCCCCTACAACACCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTc         <  5:309372/139‑1 (MQ=255)
                                                                                                                                gCAAGATCCCCTACAACCCCGCCACCGAATGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAATTTTGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCCCttttt  >  2:430434/1‑139 (MQ=255)
                                                                                                                                        |                                                                                                                                  
CGATTAGATTTTTTCCGAGCGGATGGTTCACGGCTACCTTTCCTCCGACTGCACTGTCATGCGCCAAAAGCGTCGTAGGCATTTGGATAAAATCAATGCCGCGCATAAAAGTGGCAGCCACAAAACCGGCAAGATCTCCTACAACACCGCCACCGAACGCGATGATGCATGAGGAGCGATCCATATGAAAACGAATCGCTTCACTCTGCAGTTTTGTGTACATGTCCATGGATTTCGCCTGCTCTCCGCTCGGCACCGTCACTTTTT  >  CP006881/2196503‑2196769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A