Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F56 I20 R2 1958 92.1 3575798 91.1% 3257551 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,196,845 G→A L41F (CTT→TTT)  U712_11005 ← 3‑dehydroquinate synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,196,8450GA100.0% 273.0 / NA 87L41F (CTT→TTT) U712_110053‑dehydroquinate synthase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (42/45);  total (42/45)

CAGTTTTGTGTACATGTCCATGGATTTCGCCTGCTCTCCGCTCGGCACCGTCACTTTTTTCACGGGCCATTTTTCTTGCAGCAAATGAAGCATTTCATCACCATACAGGCGGTCAACCTCTTCATCCGTGACAAGCATAATCCGTGTTAAAGGCCTGTTTAGAGAGTTTAATAGTTCGCAAACCTCTTTTCTGATGCCTTGTCCGATAAAAACAGGATACGACGAGGAAGCGGTTTGAACATGCAGTGTTTTCATTAAAATTCCCTCGA  >  CP006881/2196711‑2196979
                                                                                                                                      |                                                                                                                                      
caattttGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCAGTTTTCTTGCAGCAAATGGAGCATTTCTTCCCCCTACAGGCGGTCCACTTCTTCATCCGTGACAAACAt                                                                                                                                     >  8:310970/4‑138 (MQ=255)
  attttGTGTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGGACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAAt                                                                                                                                  <  8:342898/138‑1 (MQ=255)
      tgtgTACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATcct                                                                                                                               <  1:384989/138‑2 (MQ=255)
        tgtACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCCCAGGCCATATTTCTTGCCGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCAGACGTGACACACATAATCCttgt                                                                                                                            >  8:58997/1‑139 (MQ=255)
        tgtACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCttgt                                                                                                                            >  3:78654/1‑139 (MQ=255)
          tACATGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGtt                                                                                                                           >  4:176787/1‑138 (MQ=255)
              tGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                                                                                                      <  1:113891/139‑1 (MQ=255)
              tGTCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                                                                                                      <  8:142508/139‑1 (MQ=255)
              tGTCCATGGATTTTGCCTGCGCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                                                                                                      <  7:269711/139‑1 (MQ=255)
                tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCCCTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACATCTTCATCCCTGACAAACATAATCCTAGTTAAAGccc                                                                                                                    >  1:329722/1‑139 (MQ=255)
                tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTACAGGc                                                                                                                     <  3:220272/138‑1 (MQ=255)
                tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                                     <  4:425955/138‑1 (MQ=255)
                tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                                     <  1:430434/138‑1 (MQ=255)
                tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                                     <  1:232100/138‑1 (MQ=255)
                tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                                     <  5:49484/138‑1 (MQ=255)
                tCCATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                                     <  7:1719/138‑1 (MQ=255)
                 ccATGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCt                                                                                                                   <  8:222674/139‑1 (MQ=255)
                 ccATGGATTATGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCt                                                                                                                   <  2:61160/139‑1 (MQ=255)
                    tGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATcc                                                                                                                                >  8:188407/1‑123 (MQ=255)
                    tGGATTTTGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATcc                                                                                                                                <  7:188407/123‑1 (MQ=255)
                      gATTTTTCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCAACATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTa                                                                                                              <  1:183336/139‑1 (MQ=255)
                        ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTTCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGCTTaaa                                                                                                            <  5:144746/139‑3 (MQ=255)
                        ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                                            <  5:176561/139‑3 (MQ=255)
                        ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                                            <  8:390072/139‑3 (MQ=255)
                        ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                                            <  3:309934/139‑3 (MQ=255)
                        ttttGCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                                            <  7:96948/139‑3 (MQ=255)
                         tttgCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                                                                                                      <  2:444158/125‑1 (MQ=255)
                         tttgCCTGCTCTCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAgg                                                                                                                      >  1:444158/4‑128 (MQ=255)
                         tttgCCTGCTCTCCACTCGGTACCGTCACTTTATTCTCAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTGCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                                            <  3:114398/135‑3 (MQ=255)
                          ttgCCTGCTCTCCACTCGGTACCGTCACTTTTTTAACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaaga                                                                                                          >  7:221057/3‑139 (MQ=255)
                                 ctctCCACTCGGTACCGTCTCTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAAt                                                                                                   <  5:96951/139‑1 (MQ=255)
                                 ctctCCACTCGGTACCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTaa                                                                                                    >  7:14756/1‑138 (MQ=255)
                                           ggtaCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCa                                                                                           <  8:407860/134‑1 (MQ=255)
                                           ggtaCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCAGACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGGTTAAAGAGGTTAATAGTTCGCaag                                                                                         >  3:421366/4‑138 (MQ=255)
                                            gtaCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCAAACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCATTGTTAAAGGCCAGTTTAAAGAGGTTAATAGTTCGCaagg                                                                                        >  1:377173/3‑137 (MQ=255)
                                             taCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                                            <  6:163293/117‑3 (MQ=255)
                                             taCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                                            >  5:163293/2‑116 (MQ=255)
                                              aCCGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCGTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCct                                                                                      >  2:259210/1‑139 (MQ=255)
                                               ccGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCctt                                                                                     >  5:352448/1‑138 (MQ=255)
                                                cGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATcc                                                                                                                                >  5:14076/1‑95 (MQ=255)
                                                cGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATcc                                                                                                                                <  6:14076/95‑1 (MQ=255)
                                                cGTCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCcttt                                                                                    >  5:184646/1‑137 (MQ=255)
                                                 gTCACTTTTTTCACAGGACATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGGTAATAGTTCGCAAGCCtttt                                                                                   <  3:210943/139‑1 (MQ=255)
                                                  tCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTtttt                                                                                  >  7:178163/1‑139 (MQ=255)
                                                  tCACTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTtttt                                                                                  >  3:394352/1‑139 (MQ=255)
                                                   cccTTTTTTCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCtttttt                                                                                 <  4:78654/137‑1 (MQ=255)
                                                       tttttCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCTGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                                     <  6:52283/99‑1 (MQ=255)
                                                       tttttCACAGGCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGc                                                                                                                     >  5:52283/1‑99 (MQ=255)
                                                               aggCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTa                                                                                                                          >  5:203689/2‑86 (MQ=255)
                                                               aggCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTa                                                                                                                          <  6:203689/85‑1 (MQ=255)
                                                               aggCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGt                                                                     <  6:352448/138‑1 (MQ=255)
                                                                ggCCATTTTTCTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTc                                                                    >  5:132045/1‑139 (MQ=255)
                                                                          cTTGCAGCAAATGGAGCATTTCATCACCATACAGGCGGTCCAGTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTTATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                                           <  6:370617/138‑1 (MQ=255)
                                                                             gcagcaAATGGAGCATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAAc                                                          <  7:272765/136‑1 (MQ=255)
                                                                                        aGCATTTCATCACCATACAGGCGGTCCCCTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAgg                                            >  5:437481/1‑139 (MQ=255)
                                                                                          cctttCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGaa                                          <  8:133392/137‑1 (MQ=255)
                                                                                          cATTTCATCACCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGaa                                          <  8:178163/139‑1 (MQ=255)
                                                                                               catcaCCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGt                                     >  5:5800/1‑139 (MQ=255)
                                                                                                   aCCATACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGa                                 <  4:394352/139‑1 (MQ=255)
                                                                                                       tACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCtttt                                                                                   <  4:11015/85‑1 (MQ=255)
                                                                                                       tACAGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACAt                             >  4:180980/1‑139 (MQ=255)
                                                                                                          aGGCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCa                          <  4:79396/139‑1 (MQ=255)
                                                                                                            gCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAgt                        >  2:435076/1‑139 (MQ=255)
                                                                                                            gCGGTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCATTTTTTCTGATACCTTGt                                                                     >  6:332648/1‑94 (MQ=255)
                                                                                                               gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTaaa                                                                                                            <  1:328754/52‑3 (MQ=255)
                                                                                                               gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGAt                                                                >  5:74050/1‑96 (MQ=255)
                                                                                                               gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                                           >  6:312817/1‑101 (MQ=255)
                                                                                                               gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                                           <  5:312817/101‑1 (MQ=255)
                                                                                                               gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                                           >  1:187419/1‑101 (MQ=255)
                                                                                                               gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                                           <  2:187419/101‑1 (MQ=255)
                                                                                                               gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAgtgtc                     >  3:110896/1‑138 (MQ=255)
                                                                                                               gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAgtgtc                     >  3:173230/1‑138 (MQ=255)
                                                                                                               gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAgtgtc                     >  3:372414/1‑138 (MQ=255)
                                                                                                               gTCCACTTCTTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAAAAGGATATGACGAGGAAGCAGTTTGAACATGCAgtgtc                     >  7:337331/1‑138 (MQ=255)
                                                                                                               gTCCACTTCTTCATCCGTGACAAACATAATCATTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTAGCAAGCCTGATTTCTGATACCTTGTCCTATAAAAAAATGATATGACGAGGAAGCAGTTTGAACATGCAgtgct                     >  7:334605/1‑137 (MQ=255)
                                                                                                                 ccacatctTCATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATCCAGTGtctt                   >  4:16210/6‑139 (MQ=255)
                                                                                                                          cATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAAt          >  7:424264/1‑139 (MQ=255)
                                                                                                                          cATCCGTGACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGCATATTACGAGGAAGCAGTTTGCACATGCAGTGTCTTCATTAAAAt          >  1:1517/1‑139 (MQ=255)
                                                                                                                                 gACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                                           >  6:200467/1‑83 (MQ=255)
                                                                                                                                 gACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATaaaaa                                                           <  5:200467/83‑1 (MQ=255)
                                                                                                                                 gACAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTc    >  7:18319/1‑138 (MQ=255)
                                                                                                                                  aCAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAg                                         >  7:62946/1‑100 (MQ=255)
                                                                                                                                  aCAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAg                                         <  8:62946/100‑1 (MQ=255)
                                                                                                                                  aCAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAAc                               >  7:370406/1‑110 (MQ=255)
                                                                                                                                  aCAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAAc                               <  8:370406/110‑1 (MQ=255)
                                                                                                                                  aCAAACATAATCCTTGTTAAAGGCCTCTTTAAAGAGGTTAATAGTTCGAAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGAAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGa  >  7:119463/1‑139 (MQ=255)
                                                                                                                                   cAAACATAATCCTTGTTAAAGGCCTGTTTAAAGAGGTTAATAGTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGGCTTCATTAAAATTCCCTCGa  <  6:56828/138‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                      
CAGTTTTGTGTACATGTCCATGGATTTCGCCTGCTCTCCGCTCGGCACCGTCACTTTTTTCACGGGCCATTTTTCTTGCAGCAAATGAAGCATTTCATCACCATACAGGCGGTCAACCTCTTCATCCGTGACAAGCATAATCCGTGTTAAAGGCCTGTTTAGAGAGTTTAATAGTTCGCAAACCTCTTTTCTGATGCCTTGTCCGATAAAAACAGGATACGACGAGGAAGCGGTTTGAACATGCAGTGTTTTCATTAAAATTCCCTCGA  >  CP006881/2196711‑2196979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A