Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F56 I20 R2 1958 92.1 3575798 91.1% 3257551 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,197,019 G→A I373I (ATC→ATT)  U712_11010 ← Chorismate synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,197,0190GA100.0% 232.6 / NA 74I373I (ATC→ATT) U712_11010Chorismate synthase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (35/39);  total (35/39)

GTTCGCAAACCTCTTTTCTGATGCCTTGTCCGATAAAAACAGGATACGACGAGGAAGCGGTTTGAACATGCAGTGTTTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCGATTTGATCTAAGCCGAATTGTTCAACGACTGCGTTCGCAATCTCCCATGCGACAGCCGCTTCAGCTACTACACTTGCCGCAGGCACTGCACAGCTGTCTGAACGTTCAATGCTGGCAGAAAACGGTTCTTTCGTT  >  CP006881/2196884‑2197154
                                                                                                                                       |                                                                                                                                       
gTTCGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAAt                                                                                                                                       <  7:32791/138‑1 (MQ=255)
   cGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAAt                                                                                                                                       <  4:56607/135‑1 (MQ=255)
   cGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAAt                                                                                                                                       >  3:56607/1‑135 (MQ=255)
   cGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGa                                                                                                                                   >  7:404363/1‑139 (MQ=255)
   cGCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGa                                                                                                                                   >  3:213793/1‑139 (MQ=255)
    gCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGAt                                                                                                                                  <  1:259210/139‑1 (MQ=255)
    gCAAGCCTTTTTTCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGAt                                                                                                                                  <  7:310970/139‑1 (MQ=255)
             ttttCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCg                                                                                                                          <  4:256387/138‑1 (MQ=255)
               ttCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGaa                                                                                                                        <  5:416263/138‑1 (MQ=255)
               ttCTGATACCTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGaa                                                                                                                        <  3:118271/138‑1 (MQ=255)
                    ataccTTGTCCGATAAAAACAGGATATGAGGAGGAAGCAGTTTGAACATGCTGTGTCTTCATAAAAATTCCCTCGACATTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGTTCTATTCCGAATTg                                                                                                                     <  2:329722/133‑1 (MQ=255)
                    ataccTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGtt                                                                                                                   >  7:429613/4‑138 (MQ=255)
                    ataccTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGtt                                                                                                                   >  4:155135/4‑138 (MQ=255)
                    ataccTTGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGtt                                                                                                                   >  4:150614/4‑138 (MQ=255)
                          tGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTg                                                                                                                     >  5:40671/1‑130 (MQ=255)
                          tGTCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTg                                                                                                                     <  6:40671/130‑1 (MQ=255)
                           gTCCTATAAAAACAGTATATGACGAGGAAGCTGTTTGAACATGCAGTGTCTTCATTAAAATTCACTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTATTCCGATTTGTTCAACGAc                                                                                                            <  1:142642/138‑1 (MQ=255)
                            tCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGAt                                                                                                                                  <  5:446897/115‑1 (MQ=255)
                            tCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGAt                                                                                                                                  >  6:446897/1‑115 (MQ=255)
                            tCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTg                                                                                                          >  2:233827/1‑139 (MQ=255)
                            tCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTg                                                                                                          >  1:88981/1‑139 (MQ=255)
                            tCCGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTg                                                                                                          >  2:160536/1‑139 (MQ=255)
                              cGATAAAAACAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCg                                                                                                        >  8:273677/1‑139 (MQ=255)
                                   aaaaCAGGATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGc                                                                                                   <  8:429613/139‑1 (MQ=255)
                                          gATATGACGAGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTcc                                                                                            >  2:35253/1‑139 (MQ=255)
                                                  gaGGAAGCAGTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGa                                                                                     >  5:224281/1‑138 (MQ=255)
                                                           gTTTGAACATGCAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTc                                                                           <  8:14756/139‑1 (MQ=255)
                                                            tttGATCATGCTGTGTCTTAATTAAAATTCCCTGGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGGCAATTTGATATAATGCTATTTTTTCACCGACTGCGTTCGCAATTTCCCATGCGACAGCAGCTTc                                                                           <  8:119463/138‑1 (MQ=255)
                                                                      cAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTccac                                                                >  2:126382/1‑139 (MQ=255)
                                                                      cAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTacac                                                                >  7:403107/1‑139 (MQ=255)
                                                                      cAGTGTCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTacac                                                                >  6:169225/1‑139 (MQ=255)
                                                                        gtgtCTTCATTAAAATTCCCTCGACAGTTTTCTCATATTATCCACATTTTCTCTAATGCGGTCAATTTGATCTAAACCTAATGTTCCAACGACTGCGTTCGCAATTTCCCACGCGACAGCCGCTTCAGCGACTACACtt                                                              <  6:33885/139‑1 (MQ=255)
                                                                          gtcttCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAAGTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGc                                                            >  7:151115/4‑139 (MQ=255)
                                                                          gtcttCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGACAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGc                                                            >  7:348650/4‑139 (MQ=255)
                                                                           tcttCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGcga                                                                      <  7:386365/126‑3 (MQ=255)
                                                                           tcttCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGcga                                                                      >  8:386365/3‑126 (MQ=255)
                                                                           tcttCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGcc                                                           >  2:59412/3‑139 (MQ=255)
                                                                               aataaaaaTGCCCGCCCCAGTTTACTCATATTCTCCCCATTTTCTCAAATGCGGCAAATTTCATAAAATCCGAATTGTCCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGc                                                         <  6:5800/133‑1 (MQ=255)
                                                                                aTTAACATGCCCTCGACAGTTTTCTCAAATTCTCCACATTTGCTCAAATGCGGGCAATTTGATCAAATCCGAATTGTTCAACGACTGCGTGCGCAAATTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAgg                                                      <  6:437481/139‑1 (MQ=255)
                                                                                aTTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAg                                                       >  4:258062/1‑138 (MQ=255)
                                                                                 ttAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGCCTACCCTTGCCGCAgg                                                      >  3:108441/1‑138 (MQ=255)
                                                                                 ttAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGAATGCGTTAGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAgg                                                      >  8:146871/1‑138 (MQ=255)
                                                                                   aaatTTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAggaa                                                    <  2:39212/138‑3 (MQ=255)
                                                                                   aaaaTTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGGGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAggaa                                                    <  8:151115/138‑3 (MQ=255)
                                                                                   aaaaTTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCaa                                                                                                 >  8:416938/1‑93 (MQ=255)
                                                                                   aaaaTTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCaa                                                                                                 <  7:416938/93‑1 (MQ=255)
                                                                                   aaaaTTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAggaa                                                    <  1:373438/138‑3 (MQ=255)
                                                                                   aaaaTTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAggaa                                                    <  8:403107/138‑3 (MQ=255)
                                                                                   aaaaTTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAggaa                                                    <  3:224727/138‑3 (MQ=255)
                                                                                   aaaaTTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTGCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAggaa                                                    <  7:273677/138‑3 (MQ=255)
                                                                                          ccTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGa                                                                                                                                   >  1:82359/1‑52 (MQ=255)
                                                                                          ccTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGa                                                                                                                                   <  2:82359/52‑1 (MQ=255)
                                                                                          ccTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAGGAACAGCACAg                                            <  2:247110/139‑1 (MQ=255)
                                                                                          ccTCGACAGTTTTCTCATATTCTCAACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAGGAACAGCACAg                                            <  8:337331/139‑1 (MQ=255)
                                                                                          ccTCGACAGCTTTCTCATAATCGCCACATATACGCTAATGCCGTCAATATGACCTAAGCCGACTTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAGGAACAGCACAg                                            <  3:164238/139‑1 (MQ=255)
                                                                                            tCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAGGAACAGCACAGCt                                          >  5:261707/1‑139 (MQ=255)
                                                                                                  gTTTTCTCATATTCTCCATTTTTTCTCTTATGCGGTCAACTTCAACTAATCCCAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAGGAACAGCACAGCTGTCTGa                                    <  1:340057/139‑1 (MQ=255)
                                                                                                  gTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAGGAACAGCACAGCTGTCTGa                                    <  5:169225/139‑1 (MQ=255)
                                                                                                  gTTTCCTCATATTCTCCACATTTTCTCTAATGCGGTCAATTTGATCAAATCCGACTTGTTCAACGACTGCGGTCTCAATCTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAGGAACAGCACAGCTGTCTGa                                    <  7:58997/139‑1 (MQ=255)
                                                                                                             ttCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGCCTACACTTGCCGCAGGAACAGCACAGCTGTCTGAACGTTCAATGc                         >  6:405785/1‑139 (MQ=255)
                                                                                                             ttCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGc                                                         <  5:358060/107‑1 (MQ=255)
                                                                                                             ttCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGc                                                         >  6:358060/1‑107 (MQ=255)
                                                                                                             ttCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAgg                                                      >  7:214238/1‑110 (MQ=255)
                                                                                                             ttCTCCACATTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAgg                                                      <  8:214238/110‑1 (MQ=255)
                                                                                                                  cacaTTTTCTCTAATGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAGGAACAGCACAGCTGTCTGAACGTTCAATGCTgg                      <  8:424264/137‑1 (MQ=255)
                                                                                                                               aTGCGGTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAGGAACAGCACAGCTGTCTGAACGTTCAATGCTGGCAGAAAACGGTTCt        <  1:35253/138‑1 (MQ=255)
                                                                                                                                    gTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAGGAACAGCACAGCTGTCTGa                                    <  1:359962/105‑1 (MQ=255)
                                                                                                                                    gTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAGGAACAGCACAGCTGTCTGa                                    <  1:365963/105‑1 (MQ=255)
                                                                                                                                    gTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAGGAACAGCACAGCTGTCTGa                                    >  2:415186/1‑105 (MQ=255)
                                                                                                                                    gTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAGGAACAGCACAGCTGTCTGa                                    >  2:359962/1‑105 (MQ=255)
                                                                                                                                    gTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAGGAACAGCACAGCTGTCTGa                                    <  1:415186/105‑1 (MQ=255)
                                                                                                                                    gTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAGGAACAGCACAGCTGTCTGa                                    >  2:365963/1‑105 (MQ=255)
                                                                                                                                    gTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAGGAACAGCACAGCTGTCTGAACGTTCAATGCTGGCAGAAAACGGTTCTTTCGtt  >  7:301636/1‑139 (MQ=255)
                                                                                                                                    gTCAATTTGATCTAATCCGAATTGTTCAACGACTGCGTTCGCAATTTCCCAAGCGACAGCCGCTTCAGCGACTACACTTGCCGCAGGAACAGCACAGCTGTCTGAACGATCAATGCTGGCAGAAAACGGTTCTTTCGtt  >  6:448148/1‑139 (MQ=255)
                                                                                                                                       |                                                                                                                                       
GTTCGCAAACCTCTTTTCTGATGCCTTGTCCGATAAAAACAGGATACGACGAGGAAGCGGTTTGAACATGCAGTGTTTTCATTAAAATTCCCTCGACAGTTTTCTCATATTCTCCACATTTTCTCTAATGCGGTCGATTTGATCTAAGCCGAATTGTTCAACGACTGCGTTCGCAATCTCCCATGCGACAGCCGCTTCAGCTACTACACTTGCCGCAGGCACTGCACAGCTGTCTGAACGTTCAATGCTGGCAGAAAACGGTTCTTTCGTT  >  CP006881/2196884‑2197154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A