Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F56 I20 R2	1958	92.1	3575798	91.1%	3257551	126.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	3,913,663	T→C	I9V (ATA→GTA)	U712_20170 ←	Uncharacterized protein yxbD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	3,913,663	0	T	C	99.4%	510.6 / NA	155	I9V (ATA→GTA)	U712_20170	Uncharacterized protein yxbD
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (78/76); minor base G (0/1); total (78/77)
Fisher's exact test for biased strand distribution p-value = 4.97e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 155 total aligned reads displayed.

AGGCCAACAATCTGGTTATCATCGTTGAGCATTCCATAACCATCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTATCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTACTAGAACTTATAACTTGTCAAAAGCTGTCTG  >  CP006881/3913527‑3913797

aGGCCAACAATCTGGTTATCATCGTTGAGCATTCCATAACCATCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCt                                                                                                                                      >  3:75593/1‑139 (MQ=255)

aGGCCAACAATCTGGTTATCATCGTTGAGCATTCCATAACCATCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCt                                                                                                                                      >  3:44534/1‑139 (MQ=255)

   ccAACAATCTGGTTATCATCGTTGAGCATTCCATAACCATCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTgg                                                                                                                                    >  6:136952/1‑138 (MQ=255)

     aacaaTCTGGTTATCATCGTTGAGCATTCCATAACCATCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCAt                                                                                                                                 >  6:357969/1‑139 (MQ=255)

         aTCTGGTTATCATCGTTGATCATTCCATAACCATCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGGTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCg                                                                                                                             <  8:166455/139‑1 (MQ=255)

            tGGTTATCATCGTTGAGCATTCCATAACCATCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGATAAAACGCGGAAACAAGATCATTAGGTACCTGGCATGTCGGaa                                                                                                                          >  5:403820/1‑139 (MQ=255)

            tGGTTATCATCGTTGAGCATTCCATAACCATCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGaa                                                                                                                          >  6:385156/1‑139 (MQ=255)

              gTTATCATCGTTGAGCATTCCATAACCATCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCTGAAACAAGATCTTTAGGTACCTGGCATGTCGGaata                                                                                                                        <  6:112115/139‑1 (MQ=255)

              gTTATCATCGTTGAGCATTCCATAACCATCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGaat                                                                                                                         <  6:156305/138‑1 (MQ=255)

              gTTATCATCGTTGAGCATTCCATAACCATCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGaa                                                                                                                          <  3:161428/137‑1 (MQ=255)

              gTTATCATCGTTGAGCATTCCATAACCATCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGa                                                                                                                           <  2:324318/136‑1 (MQ=255)

               ttATCATCGTTGAGCATTCCATAACCATCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGaataa                                                                                                                       <  7:43949/139‑1 (MQ=255)

                 atcatcGTTGAGCATTCCATAACCATCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAataata                                                                                                                     >  2:378919/1‑139 (MQ=255)

                 atcatcGTTGAGCATTCCATAACCATCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAataata                                                                                                                     >  8:376286/1‑139 (MQ=255)

                            gCATTCCATAACCATCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTGCCTGGCATGTCGGAATAATATTCATATTTtc                                                                                                          <  3:432826/139‑1 (MQ=255)

                            gCATTACATAACAATCTAATTCATCGCATTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGTAATAATATTCATATTTtc                                                                                                          <  7:124293/139‑1 (MQ=255)

                             cATTCCATAACCATCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTtcc                                                                                                         >  7:332/1‑139 (MQ=255)

                                          tCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGt                                                                                                                               >  5:221989/1‑104 (MQ=255)

                                          tCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGt                                                                                                                               <  3:84672/104‑1 (MQ=255)

                                          tCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGt                                                                                                                               <  6:221989/104‑1 (MQ=255)

                                          tCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGaata                                                                                                                        >  1:209135/1‑111 (MQ=255)

                                          tCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTg                                                                                             >  7:432373/1‑138 (MQ=255)

                                          tCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTg                                                                                             >  1:64080/1‑138 (MQ=255)

                                          tCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTg                                                                                             >  1:331876/1‑138 (MQ=255)

                                          tCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTg                                                                                             >  6:348173/1‑138 (MQ=255)

                                          tCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATACATATTTTCATCCTTTTAGCTg                                                                                             >  5:404412/1‑138 (MQ=255)

                                          tCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTCCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGt                                                                                                                               >  6:283754/1‑104 (MQ=255)

                                            tAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGt                                                                                                                               >  2:266855/1‑102 (MQ=255)

                                            tAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGt                                                                                                                               <  1:266855/102‑1 (MQ=255)

                                            tAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGaa                                                                                           >  7:282673/1‑138 (MQ=255)

                                                 cATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACaaaaa                                                                                     >  8:141392/1‑139 (MQ=255)

                                                   tCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATa                                                                                   <  8:407543/139‑1 (MQ=255)

                                                    cGCAGTTATAAATACCTCTAGTAATAACCATTTGCGGACTGCCCCCGTGTTTTTTAAAAAACGGGGAAAAAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTGCTCCTTTTAGGTGAACAAAATTa                                                                                   <  5:286020/138‑1 (MQ=255)

                                                    cGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGt                                                                                                                               <  3:309105/94‑1 (MQ=255)

                                                    cGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGt                                                                                                                               >  4:309105/1‑94 (MQ=255)

                                                    cGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTtc                                                                                                          >  7:252078/1‑115 (MQ=255)

                                                    cGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTtc                                                                                                          <  8:252078/115‑1 (MQ=255)

                                                    cGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAAt                                                                                    >  3:100384/1‑137 (MQ=255)

                                                    cGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAAt                                                                                    >  6:210939/1‑137 (MQ=255)

                                                            taAATACCGCTAGAAATAACCATTTGC‑GACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTaa                                                                         >  2:329249/1‑139 (MQ=255)

                                                              aaTACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTaa                                                                         >  1:208884/1‑138 (MQ=255)

                                                                  ccGCTAGAAATAACCATTTTCGGTCTGGCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTaacaac                                                                     <  6:404412/138‑1 (MQ=255)

                                                                  ccGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTaacaac                                                                     <  2:364688/138‑1 (MQ=255)

                                                                  ccGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTaacaac                                                                     <  4:44534/138‑1 (MQ=255)

                                                                  ccGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTaacaac                                                                     <  2:208884/138‑1 (MQ=255)

                                                                   cGCTAGAAATAACCATTTGCGGCCTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATACTATTCATATTTTCCTCCTTTTAGCTGAACAAAATTAAGAGAATTaacaaga                                                                    >  1:412395/1‑136 (MQ=255)

                                                                   cGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGaat                                                                                                                         <  7:47130/85‑1 (MQ=255)

                                                                   cGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGaat                                                                                                                         >  8:47130/1‑85 (MQ=255)

                                                                   cGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTtc                                                                                                          <  1:187207/100‑1 (MQ=255)

                                                                   cGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTcctcct                                                                                                     >  5:380546/1‑105 (MQ=255)

                                                                   cGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAAc                                                                                          >  1:379550/1‑116 (MQ=255)

                                                                   cGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAAcc                                                                    >  1:106404/1‑138 (MQ=255)

                                                                   cGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAAcc                                                                    >  5:184513/1‑138 (MQ=255)

                                                                   cGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAAcc                                                                    >  8:442119/1‑138 (MQ=255)

                                                                   cGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAAcc                                                                    >  5:58115/1‑138 (MQ=255)

                                                                     cTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGaa                                                                                                                          >  6:246670/1‑82 (MQ=255)

                                                                     cTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTAt                                                                 >  6:430097/1‑139 (MQ=255)

                                                                     cTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTAt                                                                 >  3:95778/1‑139 (MQ=255)

                                                                          aaTAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTAt                                                            <  8:282673/139‑1 (MQ=255)

                                                                             aaCCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTaacaac                                                                     <  1:312056/127‑1 (MQ=255)

                                                                                  tttGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTaa                                                    <  8:190302/139‑1 (MQ=255)

                                                                                    tGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATc                                                  >  8:298132/1‑139 (MQ=255)

                                                                                      cGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATccc                                                <  1:378919/139‑1 (MQ=255)

                                                                                       ggACTGCCCCTGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATcccc                                               <  1:35268/139‑1 (MQ=255)

                                                                                       ggACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATcccc                                               <  2:306603/139‑1 (MQ=255)

                                                                                       ggACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATcccc                                               <  4:144873/139‑1 (MQ=255)

                                                                                       ggACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATcccc                                               <  5:249951/139‑1 (MQ=255)

                                                                                          cTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTa                                            >  1:284073/1‑139 (MQ=255)

                                                                                             ccccAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTTGGAACCTGGCATGTCGGAATAATATTCATTTTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTAATGTCATTACTCACCTTATCt                                         >  4:363873/1‑139 (MQ=255)

                                                                                             ccccAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTAt                                           <  8:87948/137‑1 (MQ=255)

                                                                                             ccccAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATc                                          <  2:284073/138‑1 (MQ=255)

                                                                                             ccccAGTGTTCATGAAAAAACGCTGATACAAGATCTTTATGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATc                                          <  2:71811/138‑1 (MQ=255)

                                                                                                cAGTGTTTTTGAAAAAACGCGGAAACAAGATGTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTtc                                                                                                          <  5:46470/71‑1 (MQ=255)

                                                                                                cAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTtc                                                                                                          >  6:46470/1‑71 (MQ=255)

                                                                                                 aGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTa                                     <  5:264238/139‑1 (MQ=255)

                                                                                                 aGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTa                                     <  4:75593/139‑1 (MQ=255)

                                                                                                  gtgtTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTAt                                    >  5:321816/1‑139 (MQ=255)

                                                                                                     tttttGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTaa                                                    <  2:155592/120‑1 (MQ=255)

                                                                                                       tttGAAAAAACTCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTATTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTAc                                >  1:132717/1‑138 (MQ=255)

                                                                                                       tttGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTa                                     >  1:24012/1‑133 (MQ=255)

                                                                                                       tttGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTa                                     <  2:24012/133‑1 (MQ=255)

                                                                                                       tttGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTAc                                >  6:106629/1‑138 (MQ=255)

                                                                                                       tttGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTAc                                >  1:17662/1‑138 (MQ=255)

                                                                                                       tttGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTAc                                >  5:432072/1‑138 (MQ=255)

                                                                                                         tGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTACTa                              <  5:100687/138‑1 (MQ=255)

                                                                                                         tGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTACTa                              <  2:106404/138‑1 (MQ=255)

                                                                                                         tGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTACTa                              <  7:99076/138‑1 (MQ=255)

                                                                                                         tGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTACTa                              <  7:141392/138‑1 (MQ=255)

                                                                                                         tGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTACTa                              <  3:345957/138‑1 (MQ=255)

                                                                                                         tGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTACTa                              <  5:106609/138‑1 (MQ=255)

                                                                                                         tGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTACTa                              <  5:165347/138‑1 (MQ=255)

                                                                                                         tGAAAAAACGCGGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTACTa                              <  7:174524/138‑1 (MQ=255)

                                                                                                                   cgGAAACAAGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTACTAGAACTTATAAc                   <  6:321816/139‑1 (MQ=255)

                                                                                                                          aaGATCTTTAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTACTAGAACTTATAACTTGTCaa            <  5:362764/139‑1 (MQ=255)

                                                                                                                                tttAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTACTAGAACTTATAACTTGTCAAAAGCTg      >  4:49950/1‑139 (MQ=255)

                                                                                                                                  tAGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTACTAGAACTTATAACTTGTCAAAAGCTGTc    >  4:290571/1‑139 (MQ=255)

                                                                                                                                   aGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTaacaac                                                                     >  8:303739/1‑73 (MQ=255)

                                                                                                                                   aGGTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTaacaac                                                                     <  7:303739/73‑1 (MQ=255)

                                                                                                                                    ggTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTACTAGAACTTATAACTTGTCAAAAGCTGTCt   >  1:226343/1‑138 (MQ=255)

                                                                                                                                    ggTACCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTACTAGAACTTATAACTTGTCAAAAGCTGTCTg  <  3:49950/139‑1 (MQ=255)

AGGCCAACAATCTGGTTATCATCGTTGAGCATTCCATAACCATCTAATTCATCGCAGTTATAAATACCGCTAGAAATAACCATTTGCGGACTGCCCCAGTGTTTTTGAAAAAACGCGGAAACAAGATCTTTAGGTATCTGGCATGTCGGAATAATATTCATATTTTCCTCCTTTTAGCTGAACAAAAATAAGAGAATTAACAACCTATTTTATGTCATTAATCCCCTTATCTAGTATTTACTAGAACTTATAACTTGTCAAAAGCTGTCTG  >  CP006881/3913527‑3913797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A