Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F57 I19 R4
|
125 |
90.3 |
3545000 |
95.6% |
3389020 |
127.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP006881 |
3,725,082 |
A→C |
A29A (GCT→GCG) |
U712_19205 ← |
Uncharacterized protein ywcI |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 3,725,082 | 0 | A | C | 100.0%
| 134.0
/ NA
| 36 | A29A (GCT→GCG) | U712_19205 | Uncharacterized protein ywcI |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (14/22); total (14/22) |
ATAAAGCGCGGCGGCTTTCGCTTTTTGTTTTTCTTCCTCATTCACAGCCATCCGCCACTCATAAAACGAAACAAGTCCCGCGGCCTGCACCGCCGCTTTTCTTTGGTATGTACGCTGAGCCGAATAGACAGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCC‑TTTTAGCAGCC > CP006881/3724953‑3725216
|
ataacccgcgGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCCCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGc < 2:263040/132‑1 (MQ=255)
ataAAGCGGGGCGGCTTTCGCTTTCGGCTTTTCTACCTCATTCACAGCCATCCGCCATTAATAAAACGAAACGAGGCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGc < 2:116909/138‑1 (MQ=255)
ataAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGc < 1:146273/138‑1 (MQ=255)
taAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCg < 8:86275/139‑1 (MQ=255)
aGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCA‑g < 3:322458/139‑1 (MQ=255)
ctttcgctttcgGCTTTTCTTCCTCATTCACCCCCATCCGCCATTCAAAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTc < 3:283281/139‑1 (MQ=255)
cTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTc < 4:252576/139‑1 (MQ=255)
cTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTc < 6:103461/139‑1 (MQ=255)
ccTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACCGCCGCCTTTCTTTGGTATTTACGCGGATCCCAAATGACCGCGGCACCCGCATGTTTTTAT‑TACGGCGTACACCACTtcatca > 7:370876/1‑138 (MQ=255)
ttCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGa < 3:147640/139‑1 (MQ=255)
ccATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCca < 8:171393/139‑1 (MQ=255)
ccATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCca < 4:426809/139‑1 (MQ=255)
aTCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCcaca < 5:229988/139‑1 (MQ=255)
cattCATACAACGACACGCGTCCTGCGGCCTGCAGCGCCGACTTTCTTTGGTATGTACGCTGAGCCTAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGtt < 7:327411/136‑2 (MQ=255)
cattCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCTTCCACACCCGTa < 6:178803/136‑1 (MQ=255)
cattCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTa < 1:322895/136‑1 (MQ=255)
cGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGc < 1:93790/139‑1 (MQ=255)
aaaCGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCaa < 4:176488/139‑1 (MQ=255)
aaCGAGTCCTGCGGCCTGCACAGCCGCCGTTCTTTGGTATGTACGCGGAGCCGAATAGACCGCGGCCGCCGCA‑GGGTTTCTGTGCGGCGTCACCCAGTTCATCAAAAAGCCCAGCCCCACCCCGAAAGATACACGCaaa > 3:390946/1‑139 (MQ=255)
gTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGttt < 5:373851/139‑1 (MQ=255)
ggCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGaa < 3:12298/139‑1 (MQ=255)
ggCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGaa < 5:187599/139‑1 (MQ=255)
tGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCCGCCGCA‑GTTTTTGTGTCCGGCGTCCCCCAGTTCATCAAAAAGACCATCCACACCCGGAAACATACAAGCAAACGGTTCAAAGaaaaa > 4:342263/1‑138 (MQ=255)
ccgcggttCTTTGGTTTGTACGCGGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCCACCACACCCCTAAAGATACAAGCAAACCTTTAATAGAAAAACAACCCTc > 4:229191/7‑139 (MQ=255)
ccgcCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTc > 1:255141/1‑139 (MQ=255)
tgTATGTACGCTGAGCCGAATAGACCGCGGCAGACGCA‑GTTTTTCTGTCCGGAGTCACACAGTTCATCAAAAAGACCATCAACACCCGTAAAGATACAAGCAAAAGTTTCATAGAAAAACATCCCTCCGCTTCttttt < 1:159455/137‑1 (MQ=255)
gTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTgg > 3:395137/1‑139 (MQ=255)
cGCTGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCTGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTggcaggca < 1:184858/138‑1 (MQ=255)
tGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGATCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCC‑t > 5:218346/1‑139 (MQ=255)
tGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCCGGCAGCC‑t > 7:244870/1‑139 (MQ=255)
tGAGCCGAATAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCC‑t > 5:178291/1‑139 (MQ=255)
gAGCCGAATAGACCGCGGCAGCCGAA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCGTTTTGGCAGGCAGCC‑tt > 7:409570/1‑139 (MQ=255)
aaTAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCC‑tttttag > 7:304300/1‑135 (MQ=255)
aaTAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCC‑tttttag > 3:137695/1‑135 (MQ=255)
aaTAGACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCGTCTTTTTGGCAGGCAGCC‑tttttagc > 1:160197/1‑135 (MQ=255)
gACCGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAACACATCCCTCCGCGTCTTGTTGGCCGGCCGCCTTTTTAGCAGcc > 5:313112/1‑139 (MQ=255)
|
ATAAAGCGCGGCGGCTTTCGCTTTTTGTTTTTCTTCCTCATTCACAGCCATCCGCCACTCATAAAACGAAACAAGTCCCGCGGCCTGCACCGCCGCTTTTCTTTGGTATGTACGCTGAGCCGAATAGACAGCGGCAGCCGCA‑GTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCC‑TTTTAGCAGCC > CP006881/3724953‑3725216
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
