Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F56 I0 R2
|
216 |
87.9 |
3565874 |
95.6% |
3408975 |
127.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP006881 |
3,725,205:1 |
+T |
100% |
intergenic (‑37/‑492) |
U712_19205 ← / → U712_19210 |
Uncharacterized protein ywcI/Minor extracellular protease vpr |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 3,725,205 | 1 | . | T | 79.1%
| 158.1
/ 43.8
| 67 | intergenic (‑37/‑492) | U712_19205/U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| Reads supporting (aligned to +/- strand): ref base . (4/10); new base T (36/15); total (42/25) |
| Fisher's exact test for biased strand distribution p-value = 6.07e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. |
TGAGCCGAATAGACAGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑T‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCACGGGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCA > CP006881/3725068‑3725331
|
tGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGgccgc‑cg > 1:339178/1‑138 (MQ=255)
tGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑t > 2:1625/1‑139 (MQ=255)
gAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCCCACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCCGGCAGC‑C‑t‑t > 1:140874/1‑139 (MQ=255)
gAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTGTCATAGAAAAACATCCCTCCGCGTCTTTTTGGCAGgccgc‑cgt > 6:365729/1‑137 (MQ=255)
aaTAGACCGCGGCAGCCGCTGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGCCCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATACCTCCGCTTCGTTTTGGCAGGCAGC‑C‑t‑tt‑ttag > 3:27401/1‑135 (MQ=255)
aaTAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCCCACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑t‑tt‑ttag > 3:222290/1‑135 (MQ=255)
tAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑a‑gcag < 5:133854/139‑1 (MQ=255)
accgCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGccc > 7:75303/4‑139 (MQ=255)
accgCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGccc > 1:131621/4‑139 (MQ=255)
cgCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGt > 7:320780/2‑139 (MQ=255)
cGGCAGCCGCAGGTTTTCTGTCCGGCGTCACCCAGTTCATCAAACAGCCCCGCCACACCCGGAAAGATACAAGCAAACGTGTCATAGAAACACCTCCCTCCGCGGCGTTTTGGCAGGCAGC‑C‑TGTT‑T‑A‑GCAGCCCGgtt > 7:123502/1‑139 (MQ=255)
ggCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGttt > 4:202184/1‑138 (MQ=255)
ggCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTGTTTGGCAGGCAGC‑C‑TGTT‑T‑A‑GCAGCCCGtttt > 7:168846/1‑139 (MQ=255)
cAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTtct < 1:162536/139‑1 (MQ=255)
gTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCg > 5:112546/1‑137 (MQ=255)
cTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGcccg < 5:310645/138‑2 (MQ=255)
cGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGcccgcaaga > 2:266343/1‑132 (MQ=255)
cGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTTGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCCCAAGaaaa > 5:122742/1‑138 (MQ=255)
cccAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTATAAGCCGCCGCCCGCAACAAAAGACGGc > 2:80637/1‑139 (MQ=255)
ttCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGAtt > 4:378708/1‑139 (MQ=255)
ttCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCAGCAAGAAAAGACGGCCGaat > 8:429851/1‑137 (MQ=255)
ttCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CGT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGAtt > 1:29366/1‑139 (MQ=255)
ttCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCGTCTTTTTGGCAGGCAGC‑CGT‑TT‑T‑A‑TCCGCCCGGTTTCTCAGCCGCACCCCCCAAGAAAAGAAGGCCgcgg > 1:160090/1‑136 (MQ=255)
caAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCCGGCAGC‑C‑‑‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGAtttcttttc > 3:100804/1‑139 (MQ=255)
caAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGAtttcttt > 8:126288/1‑139 (MQ=255)
aaaaaGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGAtttctttt > 4:382248/1‑139 (MQ=255)
aGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTATTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑ACAGCCCGTTTTCTCATCCCCACCCCGCAACAAAAGACCGCCGATTTATTTTCACg > 7:160644/1‑139 (MQ=255)
cccGAAAAGAAACAAGCAACCGTTTCAAAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAACACGGCCGATTTCTTTTCTCGCAAACTAGCGGc < 1:408660/139‑1 (MQ=255)
agcttAAAGAAACAAGCAATGGTTTCATAGAAAAACATCCCAGCGATTATTTTTGGCAGGCAGC‑T‑T‑TT‑T‑ATGCCCCCCTTTTTCCCCGCCGCCGCCCGCACGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGc < 8:123947/135‑1 (MQ=255)
ccGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGccc < 3:367072/96‑1 (MQ=255)
ccGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGccc > 4:367072/1‑96 (MQ=255)
tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCTGGCCGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGGCGAGTTCTTTTGTCGGAAACTAGGGGctc > 1:279595/1‑137 (MQ=255)
tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGctc > 7:136224/1‑137 (MQ=255)
tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTAGCAAACTAGCggggc > 7:397391/1‑134 (MQ=255)
tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAACAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGctc > 8:242218/1‑137 (MQ=255)
acaTACAAGCAAACTTTTCATACAAAAACATCCCTCCGCTTCTTTTTGGCCGGCTGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCCGCCGCCGCCCGCAAGAAACGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCa < 7:429851/137‑1 (MQ=255)
acaTACAACCAACCTTTGCATAAAAAAACACCCCACCGATTATTTTGGCCCGGCTCC‑A‑T‑TT‑TAA‑GCAGCCCGTTTCCTCCCCCGCACCCCCAAACAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCa < 5:140466/137‑1 (MQ=255)
aGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCa < 7:126288/139‑1 (MQ=255)
aGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCa < 1:80637/139‑1 (MQ=255)
aTACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCGCTAGCaa > 1:49152/1‑138 (MQ=255)
tACAAGCAAACGTTTCATAGAAAAAAATCCCTCCCCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GAAGCCCGTTTTCTCAGCAGCAGCCCGCAAGAAAAGACGGCCGATTTCTTATCTAGCAAACAATCGGCTCTAGCaac > 7:22241/1‑137 (MQ=255)
aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAAc > 7:345503/1‑139 (MQ=255)
aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAAc > 3:124657/1‑139 (MQ=255)
aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAAc > 3:299563/1‑139 (MQ=255)
aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAAc > 3:118354/1‑139 (MQ=255)
aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTAGCAAACTAGCCGCTCAAGCaaaa > 8:282559/1‑138 (MQ=255)
aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTAATTTATAGCAAACAAGCGGCTCTAGCaaaa > 8:175919/1‑138 (MQ=255)
aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGAGTTCGTTTCTCGCAAACTAGCGGCTCTAGCAAAAc > 6:120380/1‑139 (MQ=255)
aaGCAAACGTTTCATAGAAAAACATCCCTCCGCTTGTTTTTTGCAGGCATCGT‑T‑TT‑T‑A‑GCAGCCCGTTTTATAAGCCGCAGCCCGCAAGAAAAGACGGACGATTTCTTGTGTGTCAAACATGCGGTTCGAACaaaaat > 6:353776/1‑136 (MQ=255)
aaGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCa > 6:331303/1‑80 (MQ=255)
aaGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCa < 5:331303/80‑1 (MQ=255)
aaGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTAGCAAACTAGCGGCTCAAGCCAAACt > 4:103100/1‑138 (MQ=255)
aaGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGAGTTCTTTTGTAGCCAACTATCGGCGCTAGCAAAAca > 1:230933/1‑137 (MQ=255)
aaGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCCCAGCCCGCAAGAAAATACGGCCGAGTTCTTTTCTCGCCAACTAGCGGCTCTAGCCAAAcct > 7:123947/1‑137 (MQ=255)
gCAACCGTTTCATACAAAAAAAGCCCCCCGCTTCTTTTTGGCCGCCACC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCCCAGCCCCAAACAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt < 3:398258/139‑1 (MQ=255)
gCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑C‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAACGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt < 1:1625/139‑1 (MQ=255)
gCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCCGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt < 8:320780/139‑1 (MQ=255)
aaaCTTTTCATATAAAAACATCCCTCCGCTTCTTTTTGCCAGGCACCAT‑T‑TT‑T‑C‑CCAGCCCTTTTTCACCGCCGCAGCCCGAAACAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGa < 8:345503/139‑1 (MQ=255)
aaCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCGAGACAAACTCATGa > 6:216563/1‑138 (MQ=255)
ccttttCATCCAAAAACATCCCGCCGCTTCTTTTTGGCAGGACGC‑C‑T‑TT‑T‑ACGCACCCCGTTTTCGCAGCCCCACCCCCAAACAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct < 7:197823/136‑1 (MQ=255)
aCGTTTCATATAAAAAGATCCCGCCGCTGCTTTTTGGCAGGCAGCGT‑T‑TT‑T‑A‑GCCGCCCGTTTTCTCAGCCCCAGCCCGCAACAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct < 1:266343/139‑1 (MQ=255)
aCGTTTCATATAAAAACATCCCTCCGTTTCTTTTTGGCAGGCAGCTT‑T‑TT‑T‑T‑CCCGCCGGTTTTCTCAGCCGCAGCGCGAAAAAAATGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct < 7:282559/139‑1 (MQ=255)
aCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAACGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct < 3:202184/139‑1 (MQ=255)
aCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct > 3:109979/1‑139 (MQ=255)
aCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGAGTTGTTTTCTCGCCAACTAGCGGCTCTAGCAAAACTCATGAct > 2:90411/1‑139 (MQ=255)
cGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct > 5:347465/1‑138 (MQ=255)
aacaacCCTCCGGTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCTTTTTCGCCGCCCCCCCCCCAAATAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGt < 8:136224/139‑1 (MQ=255)
cGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGaa > 5:398337/1‑139 (MQ=255)
cttTTTGGCAGGCCCC‑C‑T‑TTAT‑A‑CCACCCCGTTTACTAACCCGCCCCCCGCAATAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCt < 1:23235/138‑1 (MQ=255)
ttgcctggccgC‑C‑T‑TT‑T‑ACGCCGCCGGTTTTCGCCGCCCCACCCCCCAACAAACCACGGCCGATTTCTTTTCTTGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGt < 3:378708/132‑1 (MQ=255)
ttGCCAGGCCGC‑C‑T‑TT‑TAA‑TCAGCCCGTTTTCTCCGCGTCCCCCCGAAATAACCCACGGCCGATTTCTTTTCTCGAAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGt < 4:108444/138‑1 (MQ=255)
tgggcagccaGC‑GTT‑TT‑T‑A‑GCCGCCCGTTTTCTACGCCCCACCCCCCAACAAAACCCGCCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGt < 8:345811/136‑1 (MQ=255)
ggcaggcaGCAT‑T‑TT‑T‑A‑GCAGCCCGTTTTATCCGCCGCACCCCGAAATAAAAGACGGCCTATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTca < 4:222290/138‑1 (MQ=255)
|
TGAGCCGAATAGACAGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑T‑TT‑T‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCACGGGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCA > CP006881/3725068‑3725331
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
