Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
115 |
276.2 |
7960526 |
99.2% |
7896841 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP006881 |
3,725,209 |
+T |
intergenic (‑41/‑488) |
U712_19205 ← / → U712_19210 |
Uncharacterized protein ywcI/Minor extracellular protease vpr |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 3,725,205 | 1 | . | T | 93.9%
| 1150.5
/ 67.5
| 342 | intergenic (‑37/‑492) | U712_19205/U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| Reads supporting (aligned to +/- strand): ref base . (9/12); new base T (159/162); total (168/174) |
| Fisher's exact test for biased strand distribution p-value = 6.54e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 368 total aligned reads displayed.
TGGTATGTACGCTGAGCCGAATAGACAGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CC‑TT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCACGGGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGAAAAAAC > CP006881/3725056‑3725349
|
gTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CC‑tt > 2:788009/1‑150 (MQ=255)
tATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CC‑tt‑t < 1:285652/150‑1 (MQ=255)
tATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTC‑TTTTGGCAGGCAG‑CC‑tt‑t‑t < 2:1144663/150‑1 (MQ=255)
aTGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CC‑tt‑t‑t > 1:1728775/1‑150 (MQ=255)
tACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CC‑tt‑t‑ttag < 1:289413/150‑4 (MQ=255)
aCGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CC‑tt‑t‑ttagc > 1:1081373/1‑146 (MQ=255)
aCGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CC‑tt‑t‑ttagc < 1:579112/150‑5 (MQ=255)
cTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGCCAGGCAG‑CC‑tt‑t‑tttgcagc > 2:3816491/1‑143 (MQ=255)
tGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGcc > 2:3883015/1‑150 (MQ=255)
gcggAATAGACCGCGGCAGCCGCAGTTTTTCTGGCCGGCGCCACCCAGTTCACCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTCCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGt < 1:2776971/147‑1 (MQ=255)
gCCGCATAGACCGCGCCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGt < 1:3305019/150‑1 (MQ=255)
cGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTTAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCC‑TT‑T‑TAGCAGCCCGttt > 2:1779410/1‑150 (MQ=255)
cGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGttt > 2:606451/1‑150 (MQ=255)
gAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCCGAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGtttt > 2:1677409/1‑150 (MQ=255)
aaTAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAAATAAAAGCAAAAGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TTGCAGCCCGTTTtc > 1:1932625/1‑150 (MQ=255)
tAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTtctc < 1:1597730/150‑1 (MQ=255)
aGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATTAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACCTCCCTCCGCCTCTTTTTGGCTGGCAG‑CCTTT‑T‑TAGCAGCCCCCTTTCTCa > 1:2100883/1‑150 (MQ=255)
gACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAg < 2:648935/150‑1 (MQ=255)
gACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCCTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGGTTTCTCAg > 1:3790206/1‑150 (MQ=255)
gACCGCGGCAGCCGCAGTCTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAg < 2:1288560/150‑1 (MQ=255)
cccgCGGCAGCCGCAGTCTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGc < 2:2012884/147‑1 (MQ=255)
accgCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCCCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGc > 2:248514/4‑150 (MQ=255)
cgCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCg < 1:2730136/149‑1 (MQ=255)
cGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGGTTTCTCAGCCGcc > 1:2614587/1‑149 (MQ=255)
ggCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCCCTTCTCTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCCGCCGCAg > 2:3021122/1‑150 (MQ=255)
aGCCCCATTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAGAGACCACCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACACCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGccc < 2:2063461/150‑1 (MQ=255)
gCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGcccg > 2:2458093/1‑149 (MQ=255)
cGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGcccgca > 2:1382744/1‑147 (MQ=255)
gCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGcccgcaa > 2:1592431/1‑146 (MQ=255)
gCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGcccgcaa > 2:2937926/1‑146 (MQ=255)
cAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGcccgcaag > 2:2707726/1‑145 (MQ=255)
ttttCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCCAGaaaa > 1:1380055/1‑150 (MQ=255)
ttCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGa > 2:2604995/1‑150 (MQ=255)
tCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGAc > 1:1286081/1‑150 (MQ=255)
tGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACgg > 1:501075/1‑150 (MQ=255)
ccGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCg > 1:1832992/1‑150 (MQ=255)
cgacACCCAGTCCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGAttt < 2:544175/147‑1 (MQ=255)
aGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTtctc > 2:2259883/1‑150 (MQ=255)
catcaAAAAGACCATCCACACCCGTAAAGATACAAGCACACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCaa < 1:2014056/150‑1 (MQ=255)
catcaAAAAGACCAAGCACACCCGTAAAGATGCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTGGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCaa < 1:3933034/150‑1 (MQ=255)
atcaAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCCAGAAAAGACGGCCGATTTCTTTTCTCGCaaa > 2:955736/1‑150 (MQ=255)
tcaAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAAc < 2:1728775/150‑1 (MQ=255)
caAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACt < 1:2342546/150‑1 (MQ=255)
aaaaaGACCATCCACACCCGTAAAGATCCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTa < 1:2649903/150‑1 (MQ=255)
aaaaGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAg < 1:53172/150‑1 (MQ=255)
aaaGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGc > 1:247719/1‑150 (MQ=255)
aGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGAAGTCTTTTCTCGCAAACTAGCgg > 1:3053588/1‑150 (MQ=255)
gACCATCCCCACCCGTAAAGATACAAGCAAACGTTCCATAGAAACCCATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATCTCTTTTCTCGCAAACTAGCGGc < 1:1312296/150‑1 (MQ=255)
ccATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCCCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCCCAAACTAGCGGctc > 1:2451314/1‑150 (MQ=255)
aTCCACACCCGTAAAGAAACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CC‑TTGT‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGGCGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTa > 2:2172334/1‑150 (MQ=255)
tCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAg > 2:2123512/1‑150 (MQ=255)
cacaCCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCa < 1:1576132/150‑1 (MQ=255)
cacaCCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCa < 1:761711/150‑1 (MQ=255)
cccccGTAAAGATCCAAGCCAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTCCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCaaa < 1:3690765/148‑1 (MQ=255)
cacCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCTGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAAACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCaaa > 1:874058/1‑150 (MQ=255)
cacCCGTAAAGATACAAGCAAACGTCCCATAGAAAAACATCACTCCGCCTCTTTTTGGCGGGCAG‑CCTTT‑T‑TAGCAGCCCGCTTTCTCCGCCGCAGCCCGCAAGAAAAGACGGCCGGGTTCTTTTCTCGCCAACTAGCGGCTCTAGCaac > 2:1438355/1‑149 (MQ=255)
cccGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAAc < 1:39731/150‑1 (MQ=255)
ccGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACt > 1:1422737/1‑150 (MQ=255)
gTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCa > 2:2503480/1‑150 (MQ=255)
aaGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGa > 1:3101631/1‑150 (MQ=255)
aGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGGCGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAc > 1:100601/1‑150 (MQ=255)
aTACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGActc < 2:1876814/150‑1 (MQ=255)
tACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGActct < 1:2524684/150‑1 (MQ=255)
tACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGActct < 2:1056615/150‑1 (MQ=255)
cAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGGTCTAGCAAAACTCATGACTCTAt > 2:463448/1‑150 (MQ=255)
gCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGAt > 1:1975182/1‑150 (MQ=255)
aaCGTTTCATAGCAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGa < 1:2249432/150‑1 (MQ=255)
aaCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGa > 2:3470117/1‑150 (MQ=255)
aCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGAc > 2:2392310/1‑150 (MQ=255)
aCGTTTCATAGAAAAACATCCCTCCGCTCCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGAc < 2:3520759/150‑1 (MQ=255)
cGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGAcc < 2:48612/150‑1 (MQ=255)
cGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGAcc < 2:3696755/150‑1 (MQ=255)
gTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGGTAGACCg > 1:999057/1‑150 (MQ=255)
cATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAGAACTCCCGGCTCCATGGTAGACCggggg > 2:2308002/1‑149 (MQ=255)
tAGAGAAGCATCCCTCCGCTTCGTCTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGaaa < 2:3314605/150‑1 (MQ=255)
tAGAAAACCTCCCCTCCGCTTCTTTTTGGCAGGCAGCCC‑TT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGaaa < 2:1628074/150‑1 (MQ=255)
aaaaCATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTACCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAgaga > 1:1531557/1‑150 (MQ=255)
accATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCCCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAAt < 1:3632485/148‑1 (MQ=255)
ctccccTCCCCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTCTCTCAGCCGCAGCGCGCCAGAAAAGCCGGCCGATTGCTTTTCCCGCAGACTAGCGGCTCCAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAAtgc < 1:3356662/147‑3 (MQ=255)
cATCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTc > 1:835606/1‑150 (MQ=255)
aTCCCTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTCCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCt < 2:396028/150‑1 (MQ=255)
cccTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGGTAGACCGTGGAAAGAGAATTCttt > 2:2553356/1‑150 (MQ=255)
cccTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCttt < 1:938984/150‑1 (MQ=255)
ccTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTg > 2:3367532/1‑150 (MQ=255)
ccTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTg > 2:360114/1‑150 (MQ=255)
ccTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGACCGATCTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTg > 1:3191913/1‑150 (MQ=255)
cTCCGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTTGCGGCTCTAGCAAAACTCATGACTCTATGGTAGACCGGGGAAAGAGAATTTTTTGt > 1:1697353/1‑150 (MQ=255)
ccGCTTCTTTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTca < 2:1956899/150‑1 (MQ=255)
cGCTTCTTTTTGGCAGGCGG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGCAAAGACGGCCGATTTCTTTTCTGGCAAACTAGCCGCCCTCGCAAAGCTCATGTCTCTATGTTAGACCGTGGAAAGAGAACTCTTTGGcac > 1:1160186/1‑150 (MQ=255)
cttcttTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCATGGAAAGAGAAATCTTTGTCACaa > 1:3439082/1‑150 (MQ=255)
ttcttTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAat < 2:3069481/150‑1 (MQ=255)
tcttTTTGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAata < 1:1647688/150‑1 (MQ=255)
tGGCAGGCAG‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTg > 1:312945/1‑150 (MQ=255)
ggcaggcaG‑CC‑TT‑TCTAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGTTTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACCCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGa > 1:2164333/1‑150 (MQ=255)
caggcag‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGaaa > 1:1455121/1‑150 (MQ=255)
caggcag‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGaaa > 1:64902/1‑150 (MQ=255)
aggcag‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGaaaa < 2:280533/150‑1 (MQ=255)
ggcag‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGaaaaa > 1:2085853/1‑150 (MQ=255)
ggcag‑CCTTT‑T‑TAGCAGCCCGCTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGaaaaa < 2:1458527/150‑1 (MQ=255)
cag‑CCTTT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGAAAGAAc > 1:2215232/1‑150 (MQ=255)
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TGGTATGTACGCTGAGCCGAATAGACAGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑CC‑TT‑T‑TAGCAGCCCGTTTTCTCAGCCGCAGCCCACGGGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATGAGTGAAAAAAC > CP006881/3725056‑3725349
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
