Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F58 I6 R3	125	101.0	3774540	95.0%	3585813	126.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	3,725,209	+T	intergenic (‑41/‑488)	U712_19205 ← / → U712_19210	Uncharacterized protein ywcI/Minor extracellular protease vpr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	3,725,205	1	.	T	77.9%	166.1 / 46.9	72	intergenic (‑37/‑492)	U712_19205/U712_19210	Uncharacterized protein ywcI/Minor extracellular protease vpr
Reads supporting (aligned to +/- strand): ref base . (2/13); new base T (34/19); total (40/32)
Fisher's exact test for biased strand distribution p-value = 8.19e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TGAGCCGAATAGACAGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑T‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCAC‑GGGAAAA‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCA  >  CP006881/3725068‑3725331

tGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAATCAAACGTTTC‑ATAGAAAAACATACCTCCGCTTCTTTTTGGCAGGCAGC‑C‑t                                                                                                                                       >  5:187777/1‑139 (MQ=255)

tGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑t                                                                                                                                       >  7:107962/1‑139 (MQ=255)

tGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑t                                                                                                                                       >  7:63994/1‑139 (MQ=255)

 gAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑t‑t                                                                                                                                     >  6:201269/1‑139 (MQ=255)

 gAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑t‑t                                                                                                                                     >  7:4353/1‑139 (MQ=255)

   gCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑t‑tt‑t                                                                                                                                  >  6:127614/1‑139 (MQ=255)

   gCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑t‑tt‑t                                                                                                                                  >  8:273494/1‑139 (MQ=255)

      gAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑t‑tt‑ttag                                                                                                                               <  7:273494/139‑4 (MQ=255)

       aaTAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑t‑tt‑ttagc                                                                                                                              >  4:229271/1‑135 (MQ=255)

         tAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCCTCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCGTCTTTTTTGAAGGCATC‑C‑t‑tt‑ttataat                                                                                                                            >  5:110077/1‑133 (MQ=255)

              cgCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACCTCCCTCCGCTTCTTTTTGGCAGGCAGC‑CGT‑TT‑T‑A‑GCAGCCC‑gg                                                                                                                     >  5:123990/2‑138 (MQ=255)

                 ggCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTTGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑Gttt                                                                                                                   >  8:39776/1‑138 (MQ=255)

                 ggCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑Gtttt                                                                                                                  >  8:90094/1‑139 (MQ=255)

                 ggCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CGT‑TT‑T‑A‑GCCGCCC‑Gtttt                                                                                                                  >  7:244373/1‑139 (MQ=255)

                 ggCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCGTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑Gtttt                                                                                                                  >  7:71997/1‑139 (MQ=255)

                 ggCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCGTCTTTTTGGCAGGCAGC‑CGT‑TT‑T‑A‑GCAGCCC‑Gtttt                                                                                                                  >  5:412084/1‑139 (MQ=255)

                 ggCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCGCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCCGCCC‑Gtttt                                                                                                                  >  8:334375/1‑139 (MQ=255)

                 ggCAGCCGCAGTTTTTCTGGCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑Gtttt                                                                                                                  <  2:267465/139‑1 (MQ=255)

                      ccGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCGTCTTTTTGGCAGGCAGC‑CGT‑TT‑T‑A‑GCAGCCC‑GTTGTCTAAg                                                                                                             >  7:440613/1‑139 (MQ=255)

                                tCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGccc                                                                                                   <  3:197960/138‑1 (MQ=255)

                                                             aGACCTTCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGATTTCTTTTCTCg                                                                   >  7:436381/1‑139 (MQ=255)

                                                                 cATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGATTTCTTTTCTCGCaaa                                                               >  4:297497/1‑139 (MQ=255)

                                                                  aTCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGATTTCTTTTCTCGCaaa                                                               >  2:277125/1‑138 (MQ=255)

                                                                         cccGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGc                                                       >  3:468425/1‑139 (MQ=255)

                                                                         cccGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGATTTCTTTTCTCGCAAACAAGCGGc                                                       >  7:108837/1‑139 (MQ=255)

                                                                         cccGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGATTTATTTTCTCGCAAACTAGCGGc                                                       >  5:157472/1‑139 (MQ=255)

                                                                          ccGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGct                                                      >  8:90148/1‑139 (MQ=255)

                                                                            gTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGctc                                                     >  7:204069/1‑138 (MQ=255)

                                                                             tAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTGTTTTTGGCAGGCAGCGT‑T‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑CGCCCGC‑AAGAAAA‑GACGGCCGATTTAGTTTATGGGAAACAAGCGGctcag                                                   >  1:115962/1‑137 (MQ=255)

                                                                             tAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑a‑gcag                                                                                                                           <  1:171628/71‑1 (MQ=255)

                                                                             tAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑a‑gcag                                                                                                                           >  2:171628/1‑71 (MQ=255)

                                                                             tAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGATTTCATTTGTCGCAAACAAGCGGctc                                                     >  8:310532/1‑137 (MQ=255)

                                                                             tAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGAGTTCTTTTATCGCCAACTATCGGCGCTa                                                   >  8:212829/1‑139 (MQ=255)

                                                                             tAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCCATTTGTTTTCTCGCAAACTAGCGGcgc                                                     >  3:304850/1‑135 (MQ=255)

                                                                             tAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTCGCAGGCAGA‑C‑TGTT‑T‑A‑GCAGCCC‑GTTTTCTCAGACGC‑AGCCCGC‑AAGAAAA‑GACGGCCGATTTCTTTTCTAGCAAACAAGCGGctct                                                    >  6:207767/1‑138 (MQ=255)

                                                                              aaaGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GCCGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAg                                                  >  6:316342/1‑139 (MQ=255)

                                                                                ataTACAAGCAAACCTTTC‑ATAGAAAAACATCCCTCCGATTCTTTTTGGCTGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AATAAAC‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCa                                                <  5:448267/137‑1 (MQ=255)

                                                                                acaaacacGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCCGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCCGCCGC‑CCCCCCC‑AAGAAAA‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCa                                                <  3:299082/135‑1 (MQ=255)

                                                                                aGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGGTTCTTTTTGGCAGGCTGC‑CTT‑TT‑T‑A‑GCCGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AACAAAA‑CACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCa                                                <  6:394465/139‑1 (MQ=255)

                                                                                  aTACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑CGCCCGC‑AAGAATA‑GACGGCCGATTTCTTTTGGCGCACACTAGCGGCTGTAGcgga                                              >  4:403932/1‑136 (MQ=255)

                                                                                  aTACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTGGAGCat                                               >  8:435670/1‑137 (MQ=255)

                                                                                    aCAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCCGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AATAAAA‑GACGGCCGATTTCTTTTATAGCGAGCTAGCGGCACTAGCAAAAc                                            >  5:282469/1‑139 (MQ=255)

                                                                                    aCAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GCCGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCaaaa                                             >  3:78435/1‑138 (MQ=255)

                                                                                    aCAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAAc                                            >  3:194929/1‑139 (MQ=255)

                                                                                    aCAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGATTTCTTTTATCGCAAACTAGCGGCGCTAGCaaaa                                             >  1:252415/1‑138 (MQ=255)

                                                                                    aCAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGAGTTCTTTTCTCGCAAACTAACCGAGCGAGCaaaa                                             >  6:322333/1‑138 (MQ=255)

                                                                                    aCAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGAATTCTTTTCTCGCAAACTAGCGGCTCTAGCAAGAc                                            >  1:28974/1‑139 (MQ=255)

                                                                                      aaGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑a‑gcag                                                                                                                           <  3:178290/62‑1 (MQ=255)

                                                                                      aaGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑a‑gcag                                                                                                                           >  4:178290/1‑62 (MQ=255)

                                                                                      aaGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCCGCCC‑GTTTTATCAGCCGC‑AGCCCGC‑CAGCAAA‑GACCGACGATTTGTTTTCTCGCAACAGAGCCGCACGAGCaaatca                                           >  6:125096/1‑135 (MQ=255)

                                                                                      aaGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GCCGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACt                                           >  3:234549/1‑138 (MQ=255)

                                                                                      aaGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACt                                           >  6:181091/1‑138 (MQ=255)

                                                                                        gaaaaCGTTTA‑AAACAAAAACACCCCTCCCTTTCTTTGTGGCAGGCAGC‑C‑T‑TTAT‑C‑GCCGCCC‑GTTTTCACACCCGC‑CCCCCTC‑AATAAAC‑CACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                        <  5:392698/137‑1 (MQ=255)

                                                                                        gCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCCGCCC‑GTTTTCTCCGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGAGTTCTTTTCTCGCCAACGAGAGGCTCTAGCAATACTCAt                                        >  5:258715/1‑139 (MQ=255)

                                                                                        gCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTATTTTTGGCAGGCAGC‑CTT‑TT‑T‑C‑GCAGCCC‑GTTTTCTCAGCCGC‑ACCCCGC‑AAGAAAA‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                        <  3:229271/139‑1 (MQ=255)

                                                                                        ccAACCGTTTA‑ATACAAAACCATCCCTCCGCTGCTTTTTGCCCGGCCGC‑CTT‑TT‑T‑C‑CCCGCCC‑TTTTTCTCCCCCCC‑CGCCCCC‑AAGAAAC‑CACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                        <  1:8688/138‑1 (MQ=255)

                                                                                        ccAAACTTTCC‑ATACAAAAACACCCCTCCGCTTCTTTTTGGCCGGCCGC‑CTT‑TT‑T‑C‑GCCGCCC‑GTTTCCTCACCCGC‑CGCCCGA‑AACAAAC‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                        <  7:90094/138‑1 (MQ=255)

                                                                                        ccAAACGTTTA‑AAAAAAAAACATCCCTCCGCTGATTTTTGGCAGGCAGC‑CTT‑TT‑T‑C‑GCCGCCC‑GTTTTCTCCGCCGC‑CGCCCGA‑AATAAAA‑CACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                        <  8:4353/138‑1 (MQ=255)

                                                                                        caacccGTTTA‑ATAGAAAACCACCCCCCCGCTTTTTTTTGGCCGCCCGC‑A‑T‑TT‑T‑T‑CCCACCC‑GTTTTCCCCCCCCC‑CCCCCCCAAACAAAC‑CACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                        <  4:325022/134‑1 (MQ=255)

                                                                                          aaaCTTTTA‑ATACAAAAAAATCCCGCCGCTTTTTTTTGGCCGCCAGC‑CTT‑TT‑T‑A‑GCCCCCG‑GTTTTCTCCGCC‑C‑ACCCCCG‑AAAAAAACGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGa                                      <  5:127614/139‑1 (MQ=255)

                                                                                          aaaCGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCGT‑T‑TT‑T‑C‑GCAGCCG‑GTTTTCTCCGCCGC‑ACCCCGC‑AAGAAAC‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGa                                      <  5:201269/139‑1 (MQ=255)

                                                                                          aaaCGTTTC‑ATACAAAACCACCCCTCCGCTTGTTTTGGGCCGCCCGC‑A‑T‑TT‑T‑T‑CCCCCCCGGTTTTCTCCGCCCC‑CCCCCGA‑AACAAAA‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGa                                      <  7:90148/139‑1 (MQ=255)

                                                                                          aaaCGTTTA‑ATACAAAAACATCCCTCCGTTTTTTTTTGGCTGCAACC‑C‑T‑TT‑TAA‑CCAGCCC‑GTTTGCTCTCCCCA‑AGCCCGC‑AATAAAA‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGa                                      <  7:39776/139‑1 (MQ=255)

                                                                                           aaCCTTTCAATACAAAAAAACCCCTCCGCTTGTTTTGGGCGGGCAGCTT‑T‑TT‑T‑C‑CCACCCG‑GTTTCCCCCCCCCC‑CCCCCCC‑AACAAAC‑CACGGCCGATTTCTTTTCTTGCAAACTAGCGGCTCTAGCAAAACTCATGa                                      <  8:440613/139‑1 (MQ=255)

                                                                                            cggTTTC‑AAAAAAAAAAACCCCGCGGCTATTTTTGGGCCGGCAGC‑CTT‑TT‑T‑C‑GCCGCCG‑TTTTGCTCCGCCTC‑CCCCCCA‑AATAAAA‑CCCGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                    <  7:334375/137‑1 (MQ=255)

                                                                                            agttttC‑TTAAAAAAACATCCTTCCGCTTTTTTTGGGAGGGCGGCTT‑T‑TT‑T‑C‑CCCGCCT‑GTTTCCTCCGCCGC‑AGCCCCC‑AAAAAAC‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                    <  6:225560/136‑1 (MQ=255)

                                                                                            acttttA‑ATAAAAAAACATCCCGCCGTTTTTTTTTGGCCGGCTGC‑T‑T‑TT‑T‑T‑CCAAGCC‑GTTTT‑TCACCCCCGACCCCCCAAATAAAC‑CACGGCCGATTTCTTTTCTCGCAAACTCGCGGCTCTAGCAAAACTCATGAct                                    <  4:78435/136‑1 (MQ=255)

                                                                                            aCGTTTC‑ATAGAAAAACATCCCTCCGCTTGTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACGCAGGAct                                    >  5:3503/1‑139 (MQ=255)

                                                                                            aCGTTTC‑AAAAAAAACAACCCCTCCGCTTCTTTTTGCCAGGCAGC‑T‑T‑TT‑TAA‑GCCGCCC‑GTTTTCACCGCCCC‑AGCCCCC‑AAAAAAC‑CACGGCCGATTTCTTTTATCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                    <  5:7230/139‑1 (MQ=255)

                                                                                            aCGTTTA‑ATATAAAAACAACCCTCCGCTTATTTTTGGCTGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCGCACCCGC‑CGCCCGC‑AACAAAA‑CACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                    <  8:63994/139‑1 (MQ=255)

                                                                                            aCGTTTA‑ATACAAAACCATCCCGCCGCTTCTTTTGGGCCGGCCGCGT‑T‑TT‑T‑C‑GCCGCCG‑GTTTTCTCCGCCCC‑CGCCCGA‑AATAAAC‑CACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                    <  4:194929/139‑1 (MQ=255)

                                                                                             cGTTCC‑ATACAAAAACAACCCTCCGCTTCTTTTTGGCCGGCCGC‑C‑T‑TT‑T‑ACGCAGCCC‑GTTTTCTCCCCCGC‑CCCCCCA‑AAGAAAC‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGActc                                   <  3:403932/139‑1 (MQ=255)

                                                                                                ttC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTtct                                                                                                                >  2:171977/1‑62 (MQ=255)

                                                                                                ttC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTtct                                                                                                                <  1:171977/62‑1 (MQ=255)

                                                                                                  c‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGAGTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTAATGACTATATGa                              >  5:347838/1‑139 (MQ=255)

                                                                                                    aTAGAAAAACTCCCCTCCTCTTATTTTTGGCCGGCAGC‑CTT‑TT‑T‑C‑GCAGCCG‑TTTTTCTCCCCCCC‑ACCCCCC‑AACAAAA‑CACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGAt                             <  2:252415/139‑1 (MQ=255)

                                                                                                        aaaaaCAACCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑T‑TT‑T‑ACGCCGCCG‑GTTTCCTCCCCCGC‑ACCCCCA‑AATAAAC‑CACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGAc                         <  3:408476/139‑1 (MQ=255)

                                                                                                                  cTCCGCTTCTTTTTGGCAGGCAGC‑CTT‑TT‑T‑A‑GCAGCCC‑GTTTACTCAGCCGC‑AGCCCGC‑AAGAAAA‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGaaa                 >  4:435348/1‑137 (MQ=255)

                                                                                                                             tttGGCAGGCAGC‑CTT‑TT‑T‑C‑GCCGCCC‑TTTTGCTCACCCGC‑ACCCCGC‑AACAACC‑CACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCtt       <  8:244373/136‑1 (MQ=255)

                                                                                                                              ttgtccggcagC‑CTT‑TT‑T‑A‑CCAGCCC‑GTTTTCTCCCCCGC‑ACCCCGA‑AAGAAAC‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGt    <  8:107962/132‑1 (MQ=255)

                                                                                                                                ggcccgcagC‑CTT‑TT‑T‑A‑GCAGCCC‑GTGTTCCCCCCCGC‑CCCCAGC‑AAGAACA‑CACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTATCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTca  <  1:27661/133‑1 (MQ=255)

                                                                                                                                ggcaggcaGCTT‑T‑TT‑T‑C‑GCTGCCC‑GTTTGCTCACCCGC‑TCCCCCA‑AATAAAC‑CACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTca  <  4:468425/138‑1 (MQ=255)

TGAGCCGAATAGACAGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTC‑ATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑T‑TT‑T‑A‑GCAGCCC‑GTTTTCTCAGCCGC‑AGCCCAC‑GGGAAAA‑GACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCA  >  CP006881/3725068‑3725331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A