Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A16 F57 I19 R4 125 90.3 3545000 95.6% 3389020 127.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,725,209 +T intergenic (‑41/‑488) U712_19205 ← / → U712_19210 Uncharacterized protein ywcI/Minor extracellular protease vpr

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,725,2051.T78.8% 136.8 / 33.5 54intergenic (‑37/‑492)U712_19205/U712_19210Uncharacterized protein ywcI/Minor extracellular protease vpr
Reads supporting (aligned to +/- strand):  ref base . (1/10);  new base T (31/10);  total (34/20)
Fisher's exact test for biased strand distribution p-value = 1.01e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TGAGCCGAATAGACAGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑TT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCACGGGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATA  >  CP006881/3725068‑3725336
                                                                                                                                           |                                                                                                                                      
tGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGATCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑t                                                                                                                                       >  5:218346/1‑139 (MQ=255)
tGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCCGGCAGC‑C‑t                                                                                                                                       >  7:244870/1‑139 (MQ=255)
tGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑t                                                                                                                                       >  5:178291/1‑139 (MQ=255)
 gAGCCGAATAGACCGCGGCAGCCGAAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCGTTTTGGCAGGCAGC‑C‑tt                                                                                                                                      >  7:409570/1‑139 (MQ=255)
       aaTAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑tt‑tttag                                                                                                                                >  7:304300/1‑135 (MQ=255)
       aaTAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑tt‑tttag                                                                                                                                >  3:137695/1‑135 (MQ=255)
       aaTAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCGTCTTTTTGGCAGGCAGC‑C‑tt‑tttagc                                                                                                                               >  1:160197/1‑135 (MQ=255)
           gACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAACACATCCCTCCGCGTCTTGTTGGCCGGCCGC‑CTTT‑TT‑A‑GCAGcc                                                                                                                          >  5:313112/1‑139 (MQ=255)
            accgCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCCTCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCGTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGccc                                                                                                                         >  3:245007/4‑139 (MQ=255)
            accgCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGccc                                                                                                                         >  3:19316/4‑139 (MQ=255)
              cgCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCATCTTTTTGGCAGGCAGC‑C‑TTATT‑A‑GCAGCCCGt                                                                                                                       >  7:208463/2‑139 (MQ=255)
                 ggCAGCCGCAGTTTTTCTGTCCGGCGTCCCCCAGTTCATCAAAAAGACCATCAACACCCGTAAAGATACAAGCAAACGTTTCCTAGAAAAACATCCCTCCGCGTCTTTTTTGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGtttt                                                                                                                    >  8:1662/1‑139 (MQ=255)
                 ggCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATACCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGttt                                                                                                                     >  8:339710/1‑138 (MQ=255)
                                                   ttCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CGTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCCGCCCGCAAGAAAAGACGGCCGAtt                                                                                  >  8:204652/1‑139 (MQ=255)
                                                        caAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCCGCCGCCGCCCGCAAGAAAAGACGGCCGAtttcttt                                                                             >  2:109393/1‑139 (MQ=255)
                                                               atcacccACACCCTAAAAGATACAAGCAAACGTTTCATACAAAACCATCCCCCCGCTTCTTTTTGGCCGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCCGCCGCCGCCCGCAACAAACCACGGCCGATTTCTTTTCTCGCa                                                                      <  6:218346/134‑1 (MQ=255)
                                                                 cATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGCAAAGACGGCCGATTTCTTTTGTCGCaaa                                                                    >  4:390045/1‑139 (MQ=255)
                                                                  aTCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCTCAAGAAAAGACGGCCGATTTATTTTCTAGCaaa                                                                    >  1:323732/1‑138 (MQ=255)
                                                                  aTCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCGTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCaaa                                                                    >  5:345470/1‑138 (MQ=255)
                                                                        acCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCCTTTTATAATCCGCAGCCCGCAAGAAAAGACGGCCGAGTTCTTTTCTAGCAAAcaatccg                                                             >  5:360080/1‑133 (MQ=255)
                                                                             tAAAGATACAAGCAAACGTTTCATAGAAATACATCCCTCCGCTTCTTTTTGGCCGGCCGC‑CGTT‑TT‑T‑GCCGCCCGTTTTCTCAGCCGGCGCCCGCCAGAACAGCCGGCCGAGTTCTTTTGTGGCGAACTTGCGGgtc                                                          >  6:145342/1‑137 (MQ=255)
                                                                             tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCGGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGctc                                                          >  3:212601/1‑137 (MQ=255)
                                                                             tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTATCGGctc                                                          >  8:309091/1‑137 (MQ=255)
                                                                             tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGctc                                                          >  4:216353/1‑137 (MQ=255)
                                                                             tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCGTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCCGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACGTGCGGctg                                                          >  6:345775/1‑136 (MQ=255)
                                                                             tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTC‑TTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGCCGGCCGAGTTCTTTTCTCGCAAACTAGCGGcaagag                                                       >  8:211978/1‑134 (MQ=255)
                                                                               accaaaCAAGCAACCGTTTAATAGAAAAACATCCCCCCGCCTTTTTTTGGCCGGCCGC‑CTTT‑TT‑A‑GCACCCCGTTTTCTCAGCCGCCCCCCGAAATAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAg                                                       <  6:207140/133‑1 (MQ=255)
                                                                                aGATACAACCAAACGTTTAATACAAAAACAACCCTCCGCTTCTTTTTGCCAGGCAGC‑CTTT‑TT‑A‑GCCGCCCGTTTTCTCCCCCCCCGCCCGCAAGAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCa                                                     <  1:77407/139‑1 (MQ=255)
                                                                                  aTACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGcccg                                                                                                     >  8:354566/1‑88 (MQ=255)
                                                                                  aTACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGcccg                                                                                                     <  7:354566/89‑2 (MQ=255)
                                                                                    aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGCCGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAAc                                                 >  3:442356/1‑139 (MQ=255)
                                                                                    aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGCTTTAATTTCTCGCAAACTAGCGGCGCTAGCAAAAc                                                 >  3:391904/1‑139 (MQ=255)
                                                                                    aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCGTTTCTCGCAAACTAGCGGCTCGAGCAAAAc                                                 >  8:357360/1‑139 (MQ=255)
                                                                                    aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGAGTTATTTTATCGCAAACTAGCGGCTCGAGCaaaa                                                  >  3:125770/1‑138 (MQ=255)
                                                                                    aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCCTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAAc                                                 >  5:207140/1‑139 (MQ=255)
                                                                                       aGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCa                                              >  5:210324/1‑139 (MQ=255)
                                                                                        gaaatcGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCGGGCAGC‑CTTT‑TT‑A‑GAAGCCGTTTTTCTCAGCCGCAGCCCGCAAGAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                             <  7:339710/134‑1 (MQ=255)
                                                                                        gCAAACGTTTCATACAAAACCAGCCCTCCGCTTCTTTTTGCCGGGCAGCTT‑TT‑TT‑A‑GCCGCCGGTTTGCTCCGCCGCCCCCCGAAAAAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                             <  5:117326/139‑1 (MQ=255)
                                                                                        gCAAACGTTTCATACAAAAACATCCCTCGCCTTCTTTTTGGCAGGCTGC‑G‑TT‑TTAA‑GCCGCCGGTTTGCTCACCCGCACCCCGAAATAAACGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                             <  1:32964/139‑1 (MQ=255)
                                                                                        ccacaCGTTTCATATAAAAACAACCCACCGCTGCTTTGGGCCCGGCACC‑CTTT‑TT‑C‑CCAGCCCGTTTGCACCCCCGCCCCCCCAATTAAACCACGGCCGATTTCTTTTCTCGCAAACTCGCGGCTCTAGCAAAACTCAt                                             <  4:442356/135‑1 (MQ=255)
                                                                                        ccAAACTTTTCAACCAAAACCATCCCTCCTCTTATTTTTGCCCGGCAGCTT‑TT‑TT‑C‑CCAGCCTTTTTTCACAGCCCCCGCCCTAAACAAACGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                             <  6:218712/138‑1 (MQ=255)
                                                                                        ccAAACTTTTATTAAAAAAAAACCCCTGGGTTTTTTTTTGGCCGGCCGCTT‑TT‑TT‑A‑CCCGCCGTTTTTCCCCGCCGCCGCCCCAAAAAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt                                             <  4:212601/138‑1 (MQ=255)
                                                                                            cgttttCAAACAAAAACATCCCTCGGCTTGTTTTTGGCAGCCACC‑A‑TT‑TT‑ACGCCGCCTTTTTCCTCCGCCCCCCCCCGAAACAACACCCGGCCTATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                         <  8:409570/136‑1 (MQ=255)
                                                                                            acttttCATAAAAAAACACCCCTCGGCTTTTTTTTGGCAGGCAGCGT‑TT‑TT‑C‑GCAGCCGGTTTTCTCACCCGCACCCCGAAACAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                         <  7:309091/136‑1 (MQ=255)
                                                                                            accttacATACAAAAACAGCCCCCCGCTTATTTTGGGCCGCCAGC‑CTTT‑TT‑C‑CCCGCCGGTTTTATCCCCCGCAGCCCCCAAGAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                         <  5:322392/133‑1 (MQ=255)
                                                                                            aCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCCGCCGCAGCCCGCAAGAAACGACGGCCGAGTTCTTTTCTCGCAAACTAGCGGCTATAGCCAAACTCATgcat                                         >  6:181476/1‑136 (MQ=255)
                                                                                            aCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                         <  3:216353/139‑1 (MQ=255)
                                                                                            aCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                         >  7:144197/1‑139 (MQ=255)
                                                                                            aCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTAGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                         >  5:218712/1‑139 (MQ=255)
                                                                                            aCGTTCAATAGAAAAACACCCCGCCGCTTTTTTTGGGCCGGCCGC‑C‑TT‑TT‑ACCCCGCGCTTTTTACCAGCCGCCCCCGGCAATAAACCCCGGCCGATTTCTTTTCTCGCAAACAAGCGGCTCTAGCAAAACTCATGAct                                         <  6:393164/139‑1 (MQ=255)
                                                                                            aCGTTAAATATAAAAACATCCCTCCGTTTCTTTTTGGCAGGCAGCTT‑TT‑TT‑C‑CCAGCCGGTTTTCTCCGCCGCACCCCGAAAAAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct                                         <  3:305660/139‑1 (MQ=255)
                                                                                                   aTACAAAAACATCCCTCCGCTTATTTTTGGCCGTCTGCTT‑TT‑TT‑A‑GCAGCCCGTTTTCTCAGCCCCCGCCCGAAATAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGAt                                  <  8:144197/139‑1 (MQ=255)
                                                                                                        aaaaCATCCCTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGAcc                             >  1:159412/1‑139 (MQ=255)
                                                                                                            cATCCCTCCGCTTCTTTTTGGCTGGCACCAT‑TT‑TT‑A‑GCAGCCCGTTTCCTCCGCCGCACCCCGAAATAAAAGACGGCCGATTTCTTTTCTCGCAAACTCGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTgg                         <  6:178291/139‑1 (MQ=255)
                                                                                                                 cTCCGCTTCTTTTTGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTAATGACTCTATGATAGACCGTGGaaa                      >  8:419006/1‑137 (MQ=255)
                                                                                                                    cGCTTCTTTTTGGCAGCCAGC‑CTTT‑TT‑C‑GCCGCCCGTTTGCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGaa                 <  2:255141/139‑1 (MQ=255)
                                                                                                                            tttGGCAGGCAGC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTATTTTCTCGCAAACTATCGGCTCTAGCAAAACTCATGACTCTATGAAATACCGTGGAAAGAGAAATGttttt         >  7:173431/1‑137 (MQ=255)
                                                                                                                                   ggcagC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCCGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAata  >  7:4173/1‑139 (MQ=255)
                                                                                                                                   ggcagC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAata  >  6:230570/1‑139 (MQ=255)
                                                                                                                                    gcagC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCa                                                     >  2:131868/1‑87 (MQ=255)
                                                                                                                                    gcagC‑CTTT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCa                                                     <  1:131868/87‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                      
TGAGCCGAATAGACAGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGC‑C‑TT‑TT‑A‑GCAGCCCGTTTTCTCAGCCGCAGCCCACGGGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATA  >  CP006881/3725068‑3725336

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A