Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F56 I15 R1
|
126 |
117.1 |
3948514 |
95.2% |
3758985 |
126.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP006881 |
3,725,209 |
+T |
intergenic (‑41/‑488) |
U712_19205 ← / → U712_19210 |
Uncharacterized protein ywcI/Minor extracellular protease vpr |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 3,725,205 | 1 | . | T | 80.0%
| 111.5
/ 31.9
| 64 | intergenic (‑37/‑492) | U712_19205/U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| Reads supporting (aligned to +/- strand): ref base . (2/9); new base T (29/15); total (40/24) |
| Fisher's exact test for biased strand distribution p-value = 6.32e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGAGCCGAATAGACAGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑C‑T‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCACGGGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATG > CP006881/3725068‑3725338
|
tGAGCCGAATAGACCGCGCCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCTAAAAGACAATCCACACCCCTAAACATACAAGCTAACGTTTCATACAAATACATGCCTCCTCTTCTTTTTGGCAGACAG‑c‑cg > 4:374544/1‑138 (MQ=255)
tGAGCCGAAGAGCCCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCCCCCCGTTCCTCAAAACGGCCATCCACACCCGTAAAGATACAAGCACACGTTTCAGAGCAACACATACCGCCGCGGCTTTTAGTCAGgccg‑c‑cg > 4:374545/1‑138 (MQ=255)
gAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCCTCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTGTTGGCAGTCAG‑C‑C‑t‑t > 6:129550/1‑139 (MQ=255)
gAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑C‑t‑t > 3:199793/1‑139 (MQ=255)
gAGCCGAATAGACCGCGGCAGCCGCAGTTTTTATGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACCCCCGTAAAGCTACAAGCAAACGTTTCATAGCAAAACATCCCTCCGCTTCGTTTTGGCAGgccg‑c‑cgt > 7:436320/1‑137 (MQ=255)
aaTAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGCCCATCCACCACCGTAAAGATACAAGCAAACGTTTCATAGAAAACCAACCCACCGCGGCTGTTTTGCAGGCCG‑C‑C‑t‑ttatat > 1:221348/1‑134 (MQ=255)
accgCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGccc > 4:134893/4‑139 (MQ=255)
accgCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGccc > 6:93950/4‑139 (MQ=255)
accgCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCAACAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCACTCCGCGTCTTTTTGGCAGGCAGAC‑G‑T‑TT‑T‑A‑TGAGccc > 2:118559/4‑139 (MQ=255)
cgCGGCAGCCGCAGTTTTTCTGTCCGGCGTCCCCCAGTTCATCAAAAAGACCATCCCCCCCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCGTCTTTTTGGCAGGCAG‑C‑CGT‑TT‑T‑A‑GCAGCCCGt > 5:438676/2‑139 (MQ=255)
cgCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CGT‑TT‑T‑A‑GCAGCCCGt > 5:120138/2‑139 (MQ=255)
cgCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCGGGTTTTTGGCCGGCGG‑C‑CGG‑TT‑T‑A‑GCCGCCCgg > 1:467490/2‑138 (MQ=255)
gCGGCAGCCGGAGTTTTTCTGTCCGGCGTCACCCAGGTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGtt < 8:436320/139‑1 (MQ=255)
ggCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGtttt > 1:32138/1‑139 (MQ=255)
ggCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGtttt > 1:39171/1‑139 (MQ=255)
cAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTtc‑t < 5:365055/139‑1 (MQ=255)
ccGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCGTCTTTTTGTCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGACCGTTTtc‑tccg > 8:240884/1‑137 (MQ=255)
cAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCg < 2:32138/139‑1 (MQ=255)
cAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCg < 2:39171/139‑1 (MQ=255)
cTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGcccg < 5:93950/138‑2 (MQ=255)
tCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGcccgc > 7:156380/1‑134 (MQ=255)
cGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGcccgcaaga > 4:48683/1‑132 (MQ=255)
cccAGTTCATCAAAAAGACCATCCCCACCCGTAAAGATACAAGCAAACGTTTAATAGAAAAACATCCCTCCGCTTGTTTTTGTCGGGCAG‑C‑CGT‑TT‑A‑A‑TGAGCCCGGGTTC‑GATGCCGCAGCGCGCAAGAAAAGCCGGc > 2:157492/1‑139 (MQ=255)
ttCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCCGGCCG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TAAGCCCCCGCCCGCAAGCAAAGACCGCCGagt > 6:134222/1‑137 (MQ=255)
ttCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCGTTTTGGCAGGCCG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCCGCCCGCAAGAAAAGACGGCCGagt > 3:42703/1‑137 (MQ=255)
ttCATCAAAAAGACCATCCACACCCGAAAAGATACAAGCAAACGTTTCATAGAAAACCATCCCTCCGCTACTTTTTGGCAGGCAG‑C‑CGT‑TT‑T‑A‑GCAGCCCCTTTTC‑ACACCCGCCCCCCGCAACAAAACACGGCCgctg > 1:213040/1‑136 (MQ=255)
aacaAAAAGACCATCCACACCCGTAAATATACAAGCAAACGTTTCATAGATAAACATACATCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑TCAGACCGATTTC‑TCAGCCGCCGCCCGCAAGCAAAAACGGACCAtttag > 4:202477/3‑137 (MQ=255)
tcaAAAAGACCATCCCCACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCGG‑C‑C‑TGTT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCGGCCCGCAAGAAAAGACGGCCGAtttctt > 1:471978/1‑139 (MQ=255)
caAAAAGACCATCCACCCCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTTGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TAAGCCGCAGCCCGCAAGAAAAGACGGGCGctttcttt > 8:162376/1‑139 (MQ=255)
accccAACCACCCCCTAAAACAAACAACCAACCGTTAAATATAAAAACATCCCACCGCTGTTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑C‑CCAGCCCGTTTTC‑TCCGCCGCACCCCCAAAGAAAAGACGGCCGATTTCTTTTCTCg < 1:448352/136‑1 (MQ=255)
aCCCTCCACACCCGTAAACAAACAACCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCCG‑C‑CTT‑TT‑T‑A‑GCACCCCGTTTTC‑TCAGCCGCCGCCCGCAATAAACCACGGCCGATTTCTTTTCTCGCa < 5:79970/139‑1 (MQ=255)
ccATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCa > 1:23318/1‑138 (MQ=255)
ccATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CAT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTGTTTTATCgga > 1:405837/1‑136 (MQ=255)
cGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTGCTTTTTGGCCGGCAG‑C‑C‑T‑TT‑TAA‑GCAGCCCGTTTTC‑ACACCCGCCGCCCGCAAGAAACGACGGCCGATTTCTTTTCTCGCAAACTAGCGGctc < 3:390153/139‑1 (MQ=255)
tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTggcggcgc > 8:112867/1‑135 (MQ=255)
tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGctc > 4:87646/1‑137 (MQ=255)
tAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCATTTCTCGCAAAAAAGCGGctc > 3:388313/1‑137 (MQ=255)
aTACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CGT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATGTGTTTTGTCGCAAACGAGCGGCGCTatcca > 3:257830/1‑134 (MQ=255)
aTACAAGCAAACGTTTAATAGAAAAACATCCCTACGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCCAGAAAAGACCGACGATTTCTTTTCTCGAAAACTAGCGGCTATAGCaa > 7:395922/1‑138 (MQ=255)
aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGCCGGCCGAGTTCGTTTCTCGCAAACTAGCGGCTCTAGCAAAAc > 8:315781/1‑139 (MQ=255)
aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCaaaa > 1:115819/1‑138 (MQ=255)
aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGAGTTCTTTTCTCGCCAACTAGCGGCTCTAGCAAAAc > 1:286398/1‑139 (MQ=255)
aCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGAGTTCTTTTCTCGCAAACTAGCGGCTCTAGCaaaa > 2:128920/1‑138 (MQ=255)
agaaaaCTTTTAATATAAAAACATCCGTCCGATTATTTTTGCCCGGCCC‑CTT‑T‑TT‑T‑A‑GCACCCTGTTTTC‑CCCCCCGCAGCCCCAAATAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCa < 2:23318/136‑1 (MQ=255)
accAAACGTTTCATACAAAAACACCCCTCCGCTTCTTTTTGCCAGGCAG‑CTT‑T‑TT‑T‑A‑GCCGCCCGTTTTC‑ACCGCCGCCGCCCGCAAAAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCa < 1:111779/137‑1 (MQ=255)
gaaaccGTTGCATCGAAAAACATCCCTCGGAGTTTTTTTGGCAGCCCG‑C‑CTT‑TT‑T‑A‑GCGGCCGGTTTTC‑TCACCCGCAGCCCGCAAGAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt < 5:129550/134‑1 (MQ=255)
gCAACCGTTTCATAGAAAACCATCCCCCCGCTTCTTTTTGGCAGCCAG‑C‑CTT‑TT‑T‑C‑GCAGCCCGTTTTC‑TCCCCCGCACCCCGCAACAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt < 8:156380/139‑1 (MQ=255)
gCAAATTTTTAATATAAAAACATCCGTCCGTTTATTTTTGGCGTGCTT‑CTT‑T‑TT‑T‑T‑GCCGCGGGTTTTG‑TCACCCGCCGCCCGCAATAAACCACGGCCGTTTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt < 8:363693/139‑1 (MQ=255)
ccAACCGTTTCATAGAAAAACAACCCTCCGCTTCTTTTGGCCCGGCCG‑C‑CTT‑TT‑T‑C‑GCCGCCCGTTTTC‑TCCCCCGCCGCCCGCAAGAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCAt < 5:185121/138‑1 (MQ=255)
aaCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACCGCCGCTTTCTTTTCTCGCAAACAAGCGGCTCGTGCAACACTCATGAc > 4:418331/1‑139 (MQ=255)
ccGTTTCATATAAAAACACCCCTCCGCTTCTTTTTGGCAGGCCG‑C‑CTT‑TT‑T‑A‑CCAGCCCGTTTTC‑TCCCCCGCAGCCCCAAACAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct < 3:473223/138‑1 (MQ=255)
ccGTTTCATACAAAAACATCCCTCCTATTTTTTTTGCCAGGCCC‑CTT‑T‑TT‑T‑A‑CAAGCCGTTTTTC‑TCCGCCCCCGCCCCAAATAACCCACGGCCTATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct < 2:115819/138‑1 (MQ=255)
aCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGCCGGCCGAGTTCTTTTCTCGCCAACTACCGGCTCTAGCAAAACTCATGAcg > 5:148927/1‑138 (MQ=255)
aCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CGT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCGAGCGAAACTCAAGaat > 7:222427/1‑137 (MQ=255)
aCGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CGT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCACCCCGCAAGAAAAGACGGCCGATTTCTTTAATCGCAAACTAGCGGCTCAAGCAAAACACATgcc > 3:221877/1‑136 (MQ=255)
aCGTTTCAAATAAAAACATCCCCCCTCTTCTTTTTGCCAGGCCG‑C‑C‑T‑TT‑TAA‑GCCGCCCTTTTTC‑ACAGCCCCCCCCCCCAACAAAACACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct < 3:134893/139‑1 (MQ=255)
aCGTTTAATAGAAAAACATCCCTCCGCTTCTTTTTGGCCGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCCGCCGCCGCCCGAAATAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct < 1:86358/139‑1 (MQ=255)
aCGTTCCATATAAAAACAGCCCTCCGCTGCTTTTTGCCCGGCAG‑C‑C‑T‑TTAT‑C‑GCCCCCCGTTTGC‑CCCGCCGCAGCCCGAAACAAACCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGAct < 6:241161/139‑1 (MQ=255)
cGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCa > 8:470645/1‑126 (MQ=255)
cGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCa < 7:470645/126‑1 (MQ=255)
cGTTTAATACAAAAACAACCCTCCGATTCTTTTTGGCAGCCCC‑CTT‑T‑TT‑T‑C‑GCAGCCCGTTTTC‑TCCGCCCCCCCCCCCAACAAATCACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGActc < 7:240884/139‑1 (MQ=255)
ttCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCCCAGCCCGCAAGAAAAGACGGCCGATTTCATTTATCGCAAACTAACGGCTCTAGCAAAAATCAAGACTCAAt > 7:363693/1‑139 (MQ=255)
tCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGAGTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCGATg > 8:80152/1‑139 (MQ=255)
aaaaCATCCCTCCGCTTCTTTTTGGCCGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAACACGGCCGATTTCGTTTGACGCAAACAACCGGCGCTAGCCAAACGAATGCCGCTATGGTAGAcc > 4:285350/1‑139 (MQ=255)
ttttGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTg > 2:137935/1‑139 (MQ=255)
tgggcaggcaG‑C‑CTT‑TT‑T‑A‑GCACCCCGTTTTC‑TCACCCGCCCCCCCCAACAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGt < 4:199793/136‑1 (MQ=255)
tGGCAGGCAG‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGCCGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAAATCATGCCTCGATGATAGCACGTGGTAAGAGAATTATTTGtaa > 7:488206/1‑137 (MQ=255)
gccaggcag‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑GCAGCCGCAGCCGCCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTca < 2:22755/136‑1 (MQ=255)
ggcag‑C‑CTT‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCGCAAGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAata > 3:201255/1‑139 (MQ=255)
cag‑C‑C‑T‑TT‑T‑ACGCCG‑CCGTTTTCGTCCGCCCCCGCCCGCACTAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATg < 7:112327/139‑1 (MQ=255)
|
TGAGCCGAATAGACAGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAG‑C‑C‑T‑TT‑T‑A‑GCAGCCCGTTTTC‑TCAGCCGCAGCCCACGGGAAAAGACGGCCGATTTCTTTTCTCGCAAACTAGCGGCTCTAGCAAAACTCATGACTCTATGATAGACCGTGGAAAGAGAATTCTTTGTCACAATATG > CP006881/3725068‑3725338
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
