Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A0 F0 I1 R1	113	306.8	9564096	98.5%	9420634	150.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	3,723,097	T→G	intergenic (‑211/‑90)	U712_19190 ← / → U712_19195	PTS system sucrose‑specific EIIBC component/putative transporter ywcJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	3,723,097	0	T	G	99.5%	804.0 / NA	207	intergenic (‑211/‑90)	U712_19190/U712_19195	PTS system sucrose‑specific EIIBC component/putative transporter ywcJ
Reads supporting (aligned to +/- strand): ref base T (0/1); new base G (104/102); total (104/103)
Fisher's exact test for biased strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 207 total aligned reads displayed.

GATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAACT‑G‑TTT‑T‑TTAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGAAAAAACAATGGAAACTCAAGCATTGCAAAAAGTTGAACAGTACGCTTTGAACAAACTA  >  CP006881/3722952‑3723237

 aTCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCCTTACCAGTCACAATCCCGCTTATTCAGAGTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGa                                                                                                                                          <  1:3659918/150‑1 (MQ=255)

    cTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑A‑TTT‑TCTTAGTTAAACAGTTTGATATAACATGTAGACaa                                                                                                                                       >  1:3780508/1‑150 (MQ=255)

     tttttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAAAACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACaaa                                                                                                                                      >  2:1580802/1‑150 (MQ=255)

         tCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAAtt                                                                                                                                  <  2:807090/150‑1 (MQ=255)

          cATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTc                                                                                                                                 >  1:2867178/1‑150 (MQ=255)

              tACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaa                                                                                                                             >  1:3569936/1‑150 (MQ=255)

               aCGCAACTTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaa                                                                                                                            <  1:3997859/150‑1 (MQ=255)

               aCGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCGCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaa                                                                                                                            >  1:2074958/1‑150 (MQ=255)

               aCGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaa                                                                                                                            >  2:3033213/1‑150 (MQ=255)

                cGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaaa                                                                                                                           <  2:1203649/150‑1 (MQ=255)

                cGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaaa                                                                                                                           >  2:1836244/1‑150 (MQ=255)

                 gCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaaaa                                                                                                                          >  1:2637848/1‑150 (MQ=255)

                  cAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaaaat                                                                                                                         >  2:4212804/1‑149 (MQ=255)

                     aTTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                                                                                      >  2:1215024/1‑149 (MQ=255)

                       tttAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTCCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAaattaatt                                                                                                                    <  1:1258087/150‑1 (MQ=255)

                        ttAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAAAAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATtg                                                                                                                   >  2:39181/1‑150 (MQ=255)

                         tAGGTCTTGCCTGCTCTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATtgt                                                                                                                  <  2:1947911/150‑1 (MQ=255)

                          atgTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATtgtg                                                                                                                 >  2:1133084/3‑150 (MQ=255)

                           ggTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATCAATTGTGa                                                                                                                >  2:1351571/1‑150 (MQ=255)

                              cTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaat                                                                                                             <  1:3915513/150‑2 (MQ=255)

                              cTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaat                                                                                                             >  1:2119312/1‑149 (MQ=255)

                                tGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATAc                                                                                                           <  2:1308538/150‑1 (MQ=255)

                                 gCCTGCTTTCCCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACt                                                                                                          <  2:1664603/150‑1 (MQ=255)

                                   cTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATCGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTc                                                                                                        <  1:1939870/150‑1 (MQ=255)

                                    tGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                                                                                       >  1:2293857/1‑150 (MQ=255)

                                     gCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTcac                                                                                                      <  2:3744653/150‑1 (MQ=255)

                                        ttACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAat                                                                                                   >  1:3509902/1‑150 (MQ=255)

                                         tACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                  >  2:4686766/1‑150 (MQ=255)

                                           ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                                                                                <  2:4404630/150‑1 (MQ=255)

                                           ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                                                                                <  2:4299799/150‑1 (MQ=255)

                                           ccAGTCACAATCCCGCTTATCCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                                                                                <  2:3412223/150‑1 (MQ=255)

                                            cAGTCACAATCCCGCTTATTCAGAGTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTCCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCg                                                                                               <  2:2979081/150‑1 (MQ=255)

                                             aGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGt                                                                                              <  1:870605/150‑1 (MQ=255)

                                             aGTCACAATCCCGCTTATTCAGATCAAGAATACGCTTTCATCATAAATCATGATAGCCTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAACATCGt                                                                                              >  1:973969/1‑150 (MQ=255)

                                              gTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                                             <  1:4158815/150‑1 (MQ=255)

                                               tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGc                                                                                            >  1:4053126/1‑150 (MQ=255)

                                                cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCt                                                                                           >  1:4393986/1‑150 (MQ=255)

                                                    aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATAc                                                                                       <  2:3235975/150‑1 (MQ=255)

                                                        cGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATg                                                                                   >  1:3612270/1‑150 (MQ=255)

                                                          cTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑A‑TTTCT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCt                                                                                 <  2:3102875/150‑1 (MQ=255)

                                                           ttATTCAGATTAAGAATACGCTTTCATCATAAAGCATGACAGGGCTTCCGTCAACTAT‑TTT‑T‑TTAGATAAATAGGTTGATATAACATGTAGTCAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTc                                                                                <  2:1876169/150‑1 (MQ=255)

                                                             aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCaa                                                                              >  1:3265658/1‑150 (MQ=255)

                                                                cAGATTGAGAATACCCTCCCATCATAGATCATGATAGCGTTTCCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTGTGATATCACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCCTGCTATACTATGCTCAATCa                                                                           <  2:2133203/150‑1 (MQ=255)

                                                                 aGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt                                                                          >  1:4420547/1‑150 (MQ=255)

                                                                  gATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAtg                                                                         >  1:1105666/1‑149 (MQ=255)

                                                                   aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAtga                                                                        <  2:1897107/150‑3 (MQ=255)

                                                                         aaTACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATgaaagaaa                                                                  >  2:3994012/1‑150 (MQ=255)

                                                                          aTACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaagaaag                                                                 >  2:1035598/1‑150 (MQ=255)

                                                                           tACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGc                                                                <  1:3033213/150‑1 (MQ=255)

                                                                           gaCGCTTTCATCATAACTCATGATAGCGTTTTCGACAACTAT‑TTT‑T‑TTAGTTAAGTAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCCCAACCATGAAAGAAAGc                                                                <  2:11575/149‑1 (MQ=255)

                                                                              gCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAgg                                                             <  1:4212804/150‑1 (MQ=255)

                                                                              gCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAgg                                                             >  2:4549071/1‑150 (MQ=255)

                                                                              gCTTTCATCATAAACCTTGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAgg                                                             <  2:3304206/150‑1 (MQ=255)

                                                                                      catAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACa                                                     <  1:2787190/150‑1 (MQ=255)

                                                                                       atAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACaa                                                    >  2:3577819/1‑150 (MQ=255)

                                                                                       atAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACaa                                                    >  1:645603/1‑150 (MQ=255)

                                                                                        tAAATCATGATATCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATTTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCACAATCATGAAAGAAAGCAGGAAAAGACAAt                                                   <  1:3498688/150‑1 (MQ=255)

                                                                                        tAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAAt                                                   >  2:3801334/1‑150 (MQ=255)

                                                                                         aaaTCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATg                                                  <  1:1767817/150‑1 (MQ=255)

                                                                                         aaaTCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATg                                                  <  1:289156/150‑1 (MQ=255)

                                                                                          aaTCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCGATCATGAAAGAAAGCAGGAAAAGACAATgg                                                 <  2:4337288/150‑1 (MQ=255)

                                                                                            tcaTGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGaa                                               <  1:1133084/148‑1 (MQ=255)

                                                                                               tGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACt                                            >  1:2399731/1‑150 (MQ=255)

                                                                                                gATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTc                                           <  2:2275955/150‑1 (MQ=255)

                                                                                                 aTAGCGTTCCCGTCAACTAT‑TTT‑T‑TTAGTAAAATAGTTTGATATATCTTGTAGACAGACATTCGTAAAAAGTCATTGTGAAATACTTCACAATAGCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCa                                          <  1:1428860/150‑1 (MQ=255)

                                                                                                    gCGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGc                                       >  1:4504653/1‑150 (MQ=255)

                                                                                                     cGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCa                                      <  2:4507812/150‑1 (MQ=255)

                                                                                                     cGTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCa                                      >  2:3319151/1‑150 (MQ=255)

                                                                                                      gTTTTCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCAt                                     <  2:205700/150‑1 (MQ=255)

                                                                                                       ttttCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACATAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCAtt                                    <  2:927980/150‑1 (MQ=255)

                                                                                                       ttttCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCGATCATGAAAGAAAGGAGGAAAAGACAATGGAAACTCAAGCAtt                                    >  1:4583434/1‑150 (MQ=255)

                                                                                                         ttCGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCAttac                                  >  2:375716/1‑148 (MQ=255)

                                                                                                           cGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACaa                                <  1:3385650/150‑1 (MQ=255)

                                                                                                           cGTCAACTAT‑TTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAAAGGAAACTCAAGCATTACaa                                >  1:2565544/1‑150 (MQ=255)

                                                                                                            gTCAACT‑ATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACaaa                               >  2:2021533/1‑150 (MQ=255)

                                                                                                            gTCAACT‑ATTTT‑T‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACaaa                               >  2:4378480/1‑150 (MQ=255)

                                                                                                                 actatttt‑t‑ttAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGt                           >  1:2022190/6‑150 (MQ=255)

                                                                                                                  ctatttt‑t‑ttAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGtt                          <  2:1677318/146‑1 (MQ=255)

                                                                                                                   tatttt‑t‑ttAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTCTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGATAAGACAATGGAAACTCAAGCATTACAAAAGGTTg                         <  1:4084155/147‑1 (MQ=255)

                                                                                                                    atttt‑t‑ttAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTAAACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGa                        >  2:1511363/3‑150 (MQ=255)

                                                                                                                       tt‑t‑ttAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACa                     <  2:2888101/150‑1 (MQ=255)

                                                                                                                       tt‑t‑ttAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACa                     >  2:2162419/1‑150 (MQ=255)

                                                                                                                             tAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTat                 <  2:3669730/150‑2 (MQ=255)

                                                                                                                             tAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTat                 <  1:3666719/150‑2 (MQ=255)

                                                                                                                                ttAAATAGGTTGATATAACATGTAGACAGAAAGTCGTAACAATTAATTGTGAAATCCTTCACAATATCGTGCTATACTATGCACAACCATGAAAGAGAGCAGGAAAAGGCAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGcg              <  2:2421984/150‑2 (MQ=255)

                                                                                                                                 tAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCtt             >  2:2616247/1‑150 (MQ=255)

                                                                                                                                 tAAATAGTTTGATATAACATGAAGACAAAAATTCGTAATAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCACTACAAAAGTGTGAACAGTAAGCtt             >  2:3119367/1‑150 (MQ=255)

                                                                                                                                   aaTAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTg           >  1:159260/1‑150 (MQ=255)

                                                                                                                                   aaTAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAATATGCTTTg           <  2:2585425/150‑1 (MQ=255)

                                                                                                                                    aTAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGa          >  1:4035291/1‑150 (MQ=255)

                                                                                                                                     tAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGaa         <  2:4104140/150‑1 (MQ=255)

                                                                                                                                     tAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGaa         <  2:4182828/150‑1 (MQ=255)

                                                                                                                                     tAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGaa         >  1:3791811/1‑150 (MQ=255)

                                                                                                                                       gTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGATGAACAGGATGCTTTggaaa       >  1:3706298/1‑146 (MQ=255)

                                                                                                                                        tttGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGATAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAaaaa      <  2:3507151/150‑1 (MQ=255)

                                                                                                                                        tttGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAaaaa      <  1:1866241/150‑1 (MQ=255)

                                                                                                                                        tttGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGGATGCTTTGAaaaa      >  1:744750/1‑150 (MQ=255)

                                                                                                                                          tGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAAc    <  1:1472469/150‑1 (MQ=255)

                                                                                                                                           gATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAAca   >  2:2546402/1‑149 (MQ=255)

                                                                                                                                            atatAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAAcaa  >  2:1008748/1‑148 (MQ=255)

GATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAACT‑G‑TTT‑T‑TTAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGAAAAAACAATGGAAACTCAAGCATTGCAAAAAGTTGAACAGTACGCTTTGAACAAACTA  >  CP006881/3722952‑3723237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A