Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A28 F56 I1 R1 120 79.0 2973134 95.3% 2833396 126.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,723,095 T→A intergenic (‑209/‑92) U712_19190 ← / → U712_19195 PTS system sucrose‑specific EIIBC component/putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,0950TA100.0% 244.8 / NA 70intergenic (‑209/‑92)U712_19190/U712_19195PTS system sucrose‑specific EIIBC component/putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (26/44);  total (26/44)

GCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAACT‑GT‑TTTT‑TAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGAAAAAACAATGGAAACTCAAGCATTGCAAAAAGTT  >  CP006881/3722985‑3723213
                                                                                                                 |                                                                                                                      
gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATATTTTTATATAAAATGTAGACAAAAATTCGTAAAAATTaat                                                                                             >  6:207002/1‑137 (MQ=255)
gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaat                                                                                             >  5:81845/1‑137 (MQ=255)
gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                                                              <  1:123563/138‑2 (MQ=255)
gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                                                              <  6:132669/138‑2 (MQ=255)
gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                                                              <  8:124217/138‑2 (MQ=255)
gCCTGCTTTACAAGTCACAATCCCGCTAATTCAGATTAAGAATACGCTTTCATCATAAATCATGATACCGTTTTCGTCAACT‑ATATTAT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaat                                                                                             >  4:218361/1‑137 (MQ=255)
gCCTGCGTTACCAGTCACAATCCCGCTTAATCAGAATAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAAATCGTaaaaataaa                                                                                              <  2:342391/138‑5 (MQ=255)
     cTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTTATATAACATGTAGACAAAAATTCGTAAAAATTAATtgtg                                                                                         >  3:193839/1‑138 (MQ=255)
     cTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATtgtg                                                                                         <  5:157871/138‑1 (MQ=255)
     cTTTACCAGTCACAATCCCGCATATTCAGATTAAGAATAAGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATtgtg                                                                                         <  2:129027/138‑1 (MQ=255)
        tACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaa                                                                                       <  5:28321/137‑1 (MQ=255)
        tACCAGTCACAATCCCGCATATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaa                                                                                      <  6:28021/138‑1 (MQ=255)
          ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                                                    <  7:253747/138‑3 (MQ=255)
             gTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACtt                                                                                 >  8:304629/1‑138 (MQ=255)
              tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                                                               <  5:255628/139‑1 (MQ=255)
              tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                                                               <  4:352789/139‑1 (MQ=255)
               cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                                                               >  1:134043/1‑138 (MQ=255)
               cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑AT‑TTTTATAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATAGTGAAATACtttc                                                                               >  6:255628/1‑136 (MQ=255)
                acaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTcaca                                                                             <  8:64825/139‑1 (MQ=255)
                   aTCCCGCTTATTCAGATTAAGACTACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          <  6:338324/139‑1 (MQ=255)
                   aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          <  1:107999/139‑1 (MQ=255)
                   aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          <  1:127838/139‑1 (MQ=255)
                   aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          <  1:165625/139‑1 (MQ=255)
                   aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          <  7:310102/139‑1 (MQ=255)
                   aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          <  7:270484/139‑1 (MQ=255)
                   aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          <  7:100576/139‑1 (MQ=255)
                   aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          <  3:164042/139‑1 (MQ=255)
                   aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          <  6:83431/139‑1 (MQ=255)
                   aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTATTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTATACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          <  5:264657/139‑1 (MQ=255)
                   aTCCCGCTTATTCAGATTAAGAATACGCATTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTATATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          <  3:105568/139‑1 (MQ=255)
                   aTCCCACTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          <  4:92503/139‑1 (MQ=255)
                    tCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGAGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATTTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          >  1:57595/1‑138 (MQ=255)
                      ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                                                        <  2:305959/138‑1 (MQ=255)
                      cagCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTAGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                                                        <  1:278359/136‑1 (MQ=255)
                       cGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TATTTAAATATTTTGATATAACATTTAGACAAAAATACGTAAAAATTAATTGTGATATACTTCACAataaggt                                                                      >  3:257578/1‑135 (MQ=255)
                        gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          <  2:263562/134‑1 (MQ=255)
                        gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          <  2:310993/134‑1 (MQ=255)
                        gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          >  1:310993/1‑134 (MQ=255)
                        gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          >  1:263562/1‑134 (MQ=255)
                        gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                     <  8:341688/139‑1 (MQ=255)
                        gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                     <  7:304629/139‑1 (MQ=255)
                        gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                     <  6:364596/139‑1 (MQ=255)
                        gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGGTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                     <  6:47472/139‑1 (MQ=255)
                         attATTCATATTAAGAATAATATTTCATCATTAATAATGATAGAGTTTTAGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAAAATTTAGTCAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                     <  2:134043/137‑1 (MQ=255)
                            aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCt                                                                   <  1:69233/137‑1 (MQ=255)
                             ttCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCtata                                                                <  4:48731/139‑1 (MQ=255)
                                aGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACt                                                              <  6:81845/138‑1 (MQ=255)
                                  aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                                                    >  8:199013/1‑112 (MQ=255)
                                  aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                                                    >  8:194478/1‑112 (MQ=255)
                                  aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                                                    <  7:194478/114‑3 (MQ=255)
                                  aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                                                    <  7:199013/114‑3 (MQ=255)
                                  aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          <  2:17858/124‑1 (MQ=255)
                                  aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                          >  1:17858/1‑124 (MQ=255)
                                  aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATg                                                           >  1:87316/1‑139 (MQ=255)
                                  aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATg                                                           >  8:161162/1‑139 (MQ=255)
                                   ttaagaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGc                                                          >  3:70744/4‑139 (MQ=255)
                                            cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt                                                  >  1:274451/1‑138 (MQ=255)
                                            cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt                                                  >  8:138125/1‑138 (MQ=255)
                                                   atcatAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaagaa                                           <  6:328454/138‑1 (MQ=255)
                                                       tAAATCATGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTATTTAGTTTGATATAACATGTAGACAAAAATTCTTAAAAATTAATTGTGATATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAg                                      >  2:97765/1‑139 (MQ=255)
                                                             aTGATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGaa                                   >  6:231667/1‑136 (MQ=255)
                                                               gATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTATACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                                                        >  7:250073/1‑97 (MQ=255)
                                                               gATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                                                        <  8:250073/97‑1 (MQ=255)
                                                               gATAGCGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTTTACTATGCTCAATCATGAAAGAAAGCAGGaaaaga                               >  2:186308/1‑136 (MQ=255)
                                                                    cGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATg                          >  1:49510/1‑138 (MQ=255)
                                                                    cGTTTTCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATg                          >  5:104385/1‑138 (MQ=255)
                                                                         tCGTCAACTATT‑TTTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACt                    >  1:364571/1‑139 (MQ=255)
                                                                              aactatt‑tttt‑tAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGc               <  2:87316/133‑1 (MQ=255)
                                                                                      tttt‑tAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAATAAAGCAGGAAAAGACAATTGAAACTCAAGCATTACa         <  2:57595/138‑1 (MQ=255)
                                                                                             gTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGtt  <  5:166792/139‑1 (MQ=255)
                                                                                                                 |                                                                                                                      
GCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAACT‑GT‑TTTT‑TAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGAAAAAACAATGGAAACTCAAGCATTGCAAAAAGTT  >  CP006881/3722985‑3723213

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A