Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A26 F57 I1 R1	119	93.8	3687158	95.5%	3521235	127.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	3,723,130	A→T	intergenic (‑244/‑57)	U712_19190 ← / → U712_19195	PTS system sucrose‑specific EIIBC component/putative transporter ywcJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	3,723,130	0	A	T	98.8%	282.2 / ‑5.7	82	intergenic (‑244/‑57)	U712_19190/U712_19195	PTS system sucrose‑specific EIIBC component/putative transporter ywcJ
Reads supporting (aligned to +/- strand): ref base A (0/1); major base T (27/53); minor base G (1/0); total (28/54)
Fisher's exact test for biased strand distribution p-value = 3.46e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

GTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAAC‑‑T‑GTT‑T‑TTTAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGAAAAAACAATGGAAACTCAAGCATTGCAAAAAGTTGAACAGTACGCTTTGAACAAACTAAACATATT  >  CP006881/3722998‑3723245

gTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACtt                                                                                                                 >  6:128863/1‑138 (MQ=255)

 tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                                                                                               <  4:114113/139‑1 (MQ=255)

 tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                                                                                               <  6:335179/139‑1 (MQ=255)

  cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                                                                                               >  6:198536/1‑138 (MQ=255)

   acaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTcaca                                                                                                             <  6:26115/139‑1 (MQ=255)

      ataccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAAAAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  8:301596/136‑1 (MQ=255)

      aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTGGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  1:411585/139‑1 (MQ=255)

      aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  5:137632/139‑1 (MQ=255)

      aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  4:347627/139‑1 (MQ=255)

      aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  4:322200/139‑1 (MQ=255)

      aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  5:198536/139‑1 (MQ=255)

      aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  6:73875/139‑1 (MQ=255)

      aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  4:159238/139‑1 (MQ=255)

      aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  5:297080/139‑1 (MQ=255)

      aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  7:14325/139‑1 (MQ=255)

      aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  7:184119/139‑1 (MQ=255)

      aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  3:299924/139‑1 (MQ=255)

      aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  7:262309/139‑1 (MQ=255)

      aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  2:228189/139‑1 (MQ=255)

      aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  2:239838/139‑1 (MQ=255)

      aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑T‑ATTAT‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  5:423411/139‑1 (MQ=255)

      aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGATTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  5:389963/139‑1 (MQ=255)

      aTCCAGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  7:196545/139‑1 (MQ=255)

       tCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  2:231431/139‑1 (MQ=255)

       tCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAatat                                                                                                         <  8:29806/139‑1 (MQ=255)

         ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                                                                                        <  7:254983/138‑1 (MQ=255)

         ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                                                                                        <  4:389541/138‑1 (MQ=255)

          cGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  3:228698/135‑1 (MQ=255)

          cGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          >  7:110714/1‑135 (MQ=255)

          cGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  8:110714/135‑1 (MQ=255)

          cGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          >  4:228698/1‑135 (MQ=255)

           gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCATC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGAGAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                                                     <  3:254077/139‑1 (MQ=255)

           gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                                                     <  4:324505/139‑1 (MQ=255)

           gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                                                     <  8:278891/139‑1 (MQ=255)

           gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                                                     <  3:15643/139‑1 (MQ=255)

           gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                                                     <  1:333121/139‑1 (MQ=255)

           gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTAAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACTTGTAGTCAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCTTg                                                                                                     <  3:389183/139‑1 (MQ=255)

           gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATCATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                                                     <  5:7275/139‑1 (MQ=255)

           gCTTATTAAGATAAAGAATACGCTTACATCATAAATCATGATAGCGTTTTCGTCAAA‑‑TATTT‑T‑TTTAGTTAAAAAGTTTGAAATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                                                     <  7:320698/139‑1 (MQ=255)

            cgtATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTTGTTAAATAGTTTGATATACCATGTAGCCAAAAATTCGTAAAAATTAATTGTGAAAGACTTCACATTATCGTGc                                                                                                    >  2:183430/3‑139 (MQ=255)

               aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCta                                                                                                  <  3:347793/138‑1 (MQ=255)

                ttCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCtata                                                                                                <  8:185643/139‑1 (MQ=255)

                ttCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCtata                                                                                                <  5:374105/139‑1 (MQ=255)

                ttCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCtata                                                                                                <  5:368049/139‑1 (MQ=255)

                     aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          >  7:52470/1‑124 (MQ=255)

                     aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  8:52470/124‑1 (MQ=255)

                     aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATg                                                                                           >  4:435669/1‑139 (MQ=255)

                        aagaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCt                                                                                         <  3:435669/137‑1 (MQ=255)

                          gaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCaa                                                                                      <  2:375832/139‑1 (MQ=255)

                               cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACA‑A‑TTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGCCAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCACAATCAt                                                                                  >  4:90630/1‑138 (MQ=255)

                               cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAatat                                                                                                         <  1:64815/115‑1 (MQ=255)

                               cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAatat                                                                                                         >  2:64815/1‑115 (MQ=255)

                               cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  1:262635/114‑1 (MQ=255)

                               cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          >  2:262635/1‑114 (MQ=255)

                               cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          <  4:393415/114‑1 (MQ=255)

                               cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                          >  3:393415/1‑114 (MQ=255)

                               cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt                                                                                  >  5:289973/1‑138 (MQ=255)

                               cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt                                                                                  >  5:260316/1‑138 (MQ=255)

                               cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt                                                                                  >  6:311636/1‑138 (MQ=255)

                               cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt                                                                                  >  4:361546/1‑138 (MQ=255)

                                    tcatcaTAAATCATGATAGCGTTTTCGTCAAC‑‑T‑ATT‑TATTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaag                                                                             >  3:334062/1‑138 (MQ=255)

                                     catcatAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaaga                                                                            >  1:96776/1‑138 (MQ=255)

                                     catcatAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaaga                                                                            >  7:188021/1‑138 (MQ=255)

                                                 tGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGaaaaga                                                               >  4:163334/1‑137 (MQ=255)

                                                 tGATAGCGTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGaaaag                                                                >  2:247400/1‑137 (MQ=255)

                                                        gTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGa                                                        <  1:286639/139‑1 (MQ=255)

                                                        gTTTTCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGa                                                        <  5:128863/139‑1 (MQ=255)

                                                           ttCGTCAAC‑‑TATTT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAAc                                                     >  7:170636/1‑139 (MQ=255)

                                                                          t‑t‑tttAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACa                                         <  5:290836/138‑1 (MQ=255)

                                                                              tttAGTTTAATAGTTTGATATAACATGTAGACAAAAATTAGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCTATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACaaa                                       <  4:334062/138‑1 (MQ=255)

                                                                                  gTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACACAAGCATTACAAAAGGtt                                  >  8:384298/1‑139 (MQ=255)

                                                                                    tAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTTAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGTAAAAGACAATGCAAACTCAAGCATTACAAAAGGTTg                                 >  2:313960/1‑138 (MQ=255)

                                                                                      aaTAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAAc                              <  7:298773/139‑1 (MQ=255)

                                                                                      aaTAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAAc                              <  8:170636/139‑1 (MQ=255)

                                                                                                     catgtAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGaaa                >  7:402347/5‑137 (MQ=255)

                                                                                                         tAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAAc            >  2:252583/1‑138 (MQ=255)

                                                                                                         tAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAAc            <  6:247939/138‑1 (MQ=255)

                                                                                                         tAGAAAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTTCTATACTATGCTAAATCATGAAATAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAAc            >  7:302562/1‑138 (MQ=255)

                                                                                                            aCAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACaaa                                       <  3:309976/108‑1 (MQ=255)

                                                                                                            aCAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACaaa                                       >  4:309976/1‑108 (MQ=255)

                                                                                                              aaaaaTTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAaaacaaaaca      >  6:14960/1‑139 (MQ=255)

                                                                                                                  aTTCGTAAAAATTAATTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATAtt  <  8:394960/139‑1 (MQ=255)

GTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAAC‑‑T‑GTT‑T‑TTTAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGAAAAAACAATGGAAACTCAAGCATTGCAAAAAGTTGAACAGTACGCTTTGAACAAACTAAACATATT  >  CP006881/3722998‑3723245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A