Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F36 I1 R1
|
6 |
116.4 |
5770842 |
95.0% |
5482299 |
132.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947 |
5,378,332 |
+A |
intergenic (‑61/‑132) |
grpE ← / → recN |
heat shock protein GrpE/DNA repair/recombination protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947 | 5,378,331 | 1 | . | A | 98.1%
| 360.6
/ ‑2.0
| 107 | intergenic (‑60/‑133) | grpE/recN | heat shock protein GrpE/DNA repair/recombination protein |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base A (52/53); total (53/54) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 110 total aligned reads displayed.
AGCTCCAGAACACGGGTATCAGCTGCATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑T‑A‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGACCCCATGCTGGTGC > NC_002947/5378186‑5378473
|
aGCTCCAGAACACGGGTATCAGCTGCATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCAAGGCTCGCCTTGGATGTCTTCta‑ttatg < 2:177893/150‑5 (MQ=255)
aGCTCCAGAACACGGGTATCAGCGGCGTTGCCTGCACCGGTTTCTTCCACGTTAAGTTCTTTCTCGTTCATCTGCTCACCAGCCATGGAGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCta‑t‑aatg < 2:1384989/150‑4 (MQ=255)
cTCCAGAACACGGGTATCAGCTGCATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCta‑t‑aatggt < 1:100788/150‑6 (MQ=255)
tCCAGAACACGGGTATCAGCTGCATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑Tgggg > 1:1984873/1‑150 (MQ=255)
cAGAACACGGGTATCAGCTGCATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGcc > 2:2257520/1‑150 (MQ=255)
cAGAACACGGGTATCAGCTGCATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGcc > 2:2255159/1‑150 (MQ=255)
acGGGTATCAGCTGCATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGaaaa > 1:932767/1‑150 (MQ=255)
acGGGTATCAGCTGCATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGATCAATTTTGTGGACTGCGAGCCAGGCTCCCCTTGGATGTCCGCTA‑TAA‑TGGGGCCGGacaa > 2:1372880/1‑150 (MQ=255)
gggTATCAGCTGCATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAAc > 1:1580599/1‑150 (MQ=255)
ggTATCAGCTGCATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAAcc < 1:1128742/150‑1 (MQ=255)
gTATCAGCTGCATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCa < 2:1509517/150‑1 (MQ=255)
gTATCAGCTGCATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCa < 2:1509767/150‑1 (MQ=255)
aTCAGCTGCATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAgg < 2:1447752/150‑1 (MQ=255)
aGCTGCATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTc > 1:1136647/1‑150 (MQ=255)
gCTGCATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCa > 2:515302/1‑150 (MQ=255)
cTGCATTGCCTGCACCGGTTTCTACCGTTTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCaa > 1:1828250/1‑150 (MQ=255)
tGCATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAg < 1:2255159/150‑1 (MQ=255)
tGCATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAg > 1:2179570/1‑150 (MQ=255)
cATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAggg > 1:1822131/1‑150 (MQ=255)
gCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCaa < 2:1741044/150‑1 (MQ=255)
ccggCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTATCTCCTGCGCAATTTTGTGGACTGCGGACAACATTCGCGTTGTATGTCGGCTT‑G‑ATTGCGGCCGTAAAAACCGGATTTAAGTGGCAAg > 1:2576661/4‑150 (MQ=255)
cTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCa > 1:2759721/1‑134 (MQ=255)
cTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCa < 2:2759721/134‑1 (MQ=255)
gCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTa < 2:932767/150‑1 (MQ=255)
cACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAg < 1:1496926/150‑1 (MQ=255)
cACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAg < 2:2179570/150‑1 (MQ=255)
gTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTc < 2:808259/150‑1 (MQ=255)
gTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGCGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTc < 1:217524/150‑1 (MQ=255)
ttcttcCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCaa < 2:2636236/150‑1 (MQ=255)
ttcttcCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCaa < 1:2149463/150‑1 (MQ=255)
ttcttcCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCaa < 2:2221354/150‑1 (MQ=255)
ttcCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGa > 1:2855028/1‑149 (MQ=255)
ttcCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGa < 2:2855028/149‑1 (MQ=255)
ttcCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGAc > 1:1823110/1‑150 (MQ=255)
tcCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGACGGAAAAACCAg > 2:1959368/1‑121 (MQ=255)
ccACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTGAAGGGGCAAGGTAGTTTTCAAGACTg < 1:1088013/150‑1 (MQ=255)
ccACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTg > 1:1478216/1‑150 (MQ=255)
ggTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCaa < 2:2568332/124‑1 (MQ=255)
ggTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCaa > 1:2568332/1‑124 (MQ=255)
ggTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAAt > 2:1024544/1‑150 (MQ=255)
gTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATc < 1:1024544/150‑1 (MQ=255)
tCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTa > 2:2570489/1‑126 (MQ=255)
tCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTa < 1:2570489/126‑1 (MQ=255)
cGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAg > 1:1622925/1‑149 (MQ=255)
cGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAg < 2:1622925/149‑1 (MQ=255)
gTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCGAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAggg < 2:1828250/150‑1 (MQ=255)
gTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTGGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAggg > 1:1002913/1‑150 (MQ=255)
gTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAggg > 2:448069/1‑150 (MQ=255)
gTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTAGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGGGAAggg > 2:1199072/1‑150 (MQ=255)
gctgctCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGAACGACTCGAATATCAGCTACC‑G‑CAGCGCCCCACTCACTTGTTCCAGGGGGTAAGTTAGTTGTTAAGACTGCAACATAATCTGCGAAGGGGCAtt < 2:2488134/150‑1 (MQ=255)
tgctCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTgg > 2:449207/1‑150 (MQ=255)
gctCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGc > 1:240901/1‑150 (MQ=255)
ctCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGCGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCa < 2:2079338/150‑1 (MQ=255)
tcatcaGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAg > 2:2558026/1‑150 (MQ=255)
atcaGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCa < 2:1055290/88‑1 (MQ=255)
atcaGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCa > 1:1055290/1‑88 (MQ=255)
cATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATaa > 2:893921/1‑121 (MQ=255)
cATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATaa < 1:893921/121‑1 (MQ=255)
ggggTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGaaaaaa < 2:2576661/150‑1 (MQ=255)
ggggTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGaaaaaa < 1:1699265/150‑1 (MQ=255)
gggTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGc < 1:1974904/122‑1 (MQ=255)
gggTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGc > 2:1974904/1‑122 (MQ=255)
gTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTa > 1:2048103/1‑150 (MQ=255)
gTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTa < 1:515302/150‑1 (MQ=255)
tctcCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTg > 2:2365166/1‑129 (MQ=255)
tctcCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGATCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTg < 1:2365166/129‑1 (MQ=255)
tcCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAg > 1:264921/1‑86 (MQ=255)
tcCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAg < 2:264921/86‑1 (MQ=255)
cTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGtata > 2:2780384/1‑150 (MQ=255)
tGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCaa > 2:199099/1‑94 (MQ=255)
tGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCaa > 2:199726/1‑94 (MQ=255)
tGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCaa < 1:199099/94‑1 (MQ=255)
tGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCaa < 1:199726/94‑1 (MQ=255)
cgcAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCa > 2:1476243/1‑125 (MQ=255)
gcAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTataaata > 1:154867/1‑150 (MQ=255)
aaTTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAAc < 2:1580599/150‑1 (MQ=255)
ttttGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGAAAGATAGTTTTCAAGAATGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCa > 1:1362056/1‑150 (MQ=255)
ttGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGa < 2:240901/150‑1 (MQ=255)
tgtgGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGAc > 2:2247036/1‑150 (MQ=255)
gACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGaaaaaa > 2:2442234/1‑125 (MQ=255)
gACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGaaaaaa < 1:2442234/125‑1 (MQ=255)
aCTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGAt > 2:1143861/1‑150 (MQ=255)
cGAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCTTGAAAAAATTACTGTAGAAATAACCAGACCTGATTTcc > 2:1754824/1‑150 (MQ=255)
gAGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCg > 2:684314/1‑150 (MQ=255)
gAGCCAGGCTCCCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACAGAATCTGCGAAGGTGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCg < 1:1024811/150‑1 (MQ=255)
aGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCg < 2:1460178/149‑1 (MQ=255)
aGCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCg > 1:1460178/1‑149 (MQ=255)
gCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGc < 2:2646558/98‑1 (MQ=255)
gCCAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGc > 1:2646558/1‑98 (MQ=255)
ccAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTataaata > 2:976932/1‑130 (MQ=255)
ccAGGCTCGCCTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTataaata < 1:976932/130‑1 (MQ=255)
ccTTGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAggg < 2:2712926/46‑1 (MQ=255)
ttGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTg < 1:2496496/111‑1 (MQ=255)
ttGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGACCCCAt < 1:2558026/150‑1 (MQ=255)
ttGGATGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGACCCCAt < 1:2057881/150‑1 (MQ=255)
tGGATGGCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGACCCCATg < 2:1362056/150‑1 (MQ=255)
aaTGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGACCCCATGCt < 1:1754824/149‑1 (MQ=255)
tGTCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGCCCCCATGCTgg < 2:1002913/150‑1 (MQ=255)
tCGGCTA‑TAA‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGACCCCATGCTGGTg < 1:2780384/150‑1 (MQ=255)
cGGCTA‑TAA‑TGGGGCCAGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGACCCCATGCTGGTGc > 2:905208/1‑150 (MQ=255)
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AGCTCCAGAACACGGGTATCAGCTGCATTGCCTGCACCGGTTTCTTCCACGTTAAGGTCTTTCTCGTTCAGCTGCTCATCAGCCATGGGGTCTCTCCTGCGCAATTTTGTGGACTGCGAGCCAGGCTCGCCTTGGATGTCGGCTA‑T‑A‑TGGGGCCGGAAAAACCAGGTTCAAGGGGCAAGGTAGTTTTCAAGACTGCAACATAATCTGCGAAGGGGCATTGGCAGGCCTGAAAAAAGTACTGTATAAATAACCAGACCTGATTTCCGGGAGCCGACCCCATGCTGGTGC > NC_002947/5378186‑5378473
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
