Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F80 I0 R1
|
1148 |
65.4 |
3296958 |
93.8% |
3092546 |
131.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_002947 |
196,327 |
A→C |
14.9% |
T611T (ACA→ACC) |
PP_0168 → |
putative surface adhesion protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947 | 196,327 | 0 | A | C | 14.9%
| 217.9
/ 30.7
| 94 | T611T (ACA→ACC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (41/38); new base C (6/8); total (47/47) |
| Fisher's exact test for biased strand distribution p-value = 5.74e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01 |
GACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGC > NC_002947/196180‑196475
|
gACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGt < 1:1044631/150‑1 (MQ=40)
gACCCCGAACCCGACGCCGGCTCAGACCACGAGCAACGACTCGGGCGACGCCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGt > 1:1110458/1‑150 (MQ=255)
gACCCCGAACCCGACGCCGGCTAAACAAACTATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGt < 1:820728/150‑1 (MQ=14)
cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc < 1:1072120/150‑1 (MQ=255)
cGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAccc > 2:412093/1‑150 (MQ=40)
cGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAccc > 2:105662/1‑150 (MQ=255)
aCCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGt > 1:659859/1‑150 (MQ=40)
cccGACGCCGGCTCAGACCACGCTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTc < 2:1173206/150‑1 (MQ=255)
gACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCGGTCGGAGACGGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCaa < 1:1103868/150‑1 (MQ=255)
gACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCaa > 2:225812/1‑150 (MQ=255)
gCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTTACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATACTGACCAGACGCAGGTGAGAGTGACCCTGTCCAACGGCCaa > 1:781332/1‑150 (MQ=14)
cTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCaaa > 1:760847/1‑150 (MQ=255)
cTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCaaa > 2:106266/1‑150 (MQ=255)
gACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAt < 1:1416821/150‑1 (MQ=255)
aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAtt > 1:24649/1‑150 (MQ=255)
aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAtt > 1:1630081/1‑150 (MQ=255)
ccACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa > 1:384890/1‑150 (MQ=40)
gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt > 1:480222/1‑150 (MQ=40)
aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 2:908091/150‑1 (MQ=40)
tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGt < 1:282920/118‑1 (MQ=255)
tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGt > 2:282920/1‑118 (MQ=255)
tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACg < 2:697106/132‑1 (MQ=255)
tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACg > 1:697106/1‑132 (MQ=255)
aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 2:1186494/150‑1 (MQ=40)
aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 1:1311029/150‑1 (MQ=255)
gACTCAGTCGATATCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCCCCGAGGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACCCCGGTGACAGTGACCCTGTCTAACGGCCAAACCATTACCGTTGAAggc > 2:152408/1‑148 (MQ=11)
aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCg < 2:760847/150‑1 (MQ=40)
ttCGGTCGACACCACGACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 2:347973/149‑1 (MQ=37)
cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 2:164598/150‑1 (MQ=40)
cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 1:466296/150‑1 (MQ=40)
ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTcc < 2:1136317/118‑1 (MQ=255)
ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTcc > 1:1136317/1‑118 (MQ=255)
gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaag > 1:169943/1‑149 (MQ=255)
acacCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 1:1150071/134‑1 (MQ=39)
acacCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt > 2:1150071/1‑134 (MQ=39)
accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc > 2:909393/1‑105 (MQ=40)
accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc < 1:909393/105‑1 (MQ=40)
ccacTACCGCGACCCTGCCGGCGAGCCCGTCGGTCACCGAA‑ACAGCGACAGCAAGTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGATGGCACTTACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg > 1:1532989/1‑150 (MQ=11)
accaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGc > 1:531561/4‑150 (MQ=1)
accaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGc > 1:1362873/4‑150 (MQ=2)
cTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCa > 1:1581008/1‑150 (MQ=14)
cTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCa < 2:384890/150‑1 (MQ=14)
tACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAg > 1:931361/1‑150 (MQ=11)
cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGt > 2:1112206/1‑150 (MQ=35)
cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGt < 1:1136561/150‑1 (MQ=255)
ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAttt > 1:1234338/1‑150 (MQ=35)
tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 1:1112206/150‑1 (MQ=34)
tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTcc > 1:307514/1‑150 (MQ=11)
cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAg > 1:812702/1‑131 (MQ=255)
cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAg < 2:812702/131‑1 (MQ=255)
cGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGa > 2:1305677/1‑150 (MQ=35)
cGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGa > 1:351522/1‑150 (MQ=35)
cGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGa > 1:579644/1‑150 (MQ=35)
tCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAt < 1:77801/150‑1 (MQ=11)
aCCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc < 2:1234338/150‑1 (MQ=35)
aCCGAAGGCGGCGTGATA‑ACTTACCCCGTGACCGTTAGCAATCCTGACCAGACGCCGGTGATGTTCTCTTCCGCCAACGGCCAAACCATTCCCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc < 1:28957/150‑1 (MQ=11)
cGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGa < 2:1511760/144‑1 (MQ=35)
cGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGa > 1:1511760/1‑144 (MQ=35)
cGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCAATACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa > 1:1240656/1‑150 (MQ=21)
cGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGAcccc > 2:1154119/1‑135 (MQ=11)
cGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGAcccc < 1:1154119/135‑1 (MQ=11)
aaGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCg < 2:384325/117‑1 (MQ=255)
aaGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCg > 1:384325/1‑117 (MQ=11)
cggcgTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa < 2:480222/150‑1 (MQ=34)
cggcgTGATC‑ACACACCCCCTGAGCCGCTGTACCCCTGCCCAGACGCCGGTGACCGTGACCCCGTCCAACGGCCAAGCGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACGTCCAGACCCCGGCGAATGACGTCTAcaacaa < 2:615614/150‑1 (MQ=11)
ggcgTGATC‑ACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACACCGGCGAATGACGTCTACaacaac < 2:1362873/150‑1 (MQ=11)
cgTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGCCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGCCGTCTACAACAACgg < 1:1201528/150‑1 (MQ=21)
gATC‑ACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 2:1160714/150‑1 (MQ=11)
aTC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc > 2:579963/1‑132 (MQ=37)
aTC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc > 2:580132/1‑132 (MQ=37)
aTC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc < 1:579963/132‑1 (MQ=37)
aTC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc < 1:580132/132‑1 (MQ=35)
tC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 2:659859/150‑1 (MQ=35)
ttACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACg > 1:1431796/1‑140 (MQ=33)
ttACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACg < 2:1431796/140‑1 (MQ=33)
ttACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 2:259908/143‑1 (MQ=33)
ttACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 1:259908/1‑143 (MQ=33)
cacCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCa > 1:601454/1‑90 (MQ=33)
cacCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCa < 2:601454/90‑1 (MQ=35)
cccGTCACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTAACCCTCTCCAATGACCAAACCATTACCATTGAAGTCGGCAAAACCCAAGGCAGCGTCGATTTCCACACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgt < 2:1232460/149‑1 (MQ=11)
ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc < 2:486391/118‑1 (MQ=33)
ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 1:486391/1‑118 (MQ=33)
tGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCg > 1:763087/1‑150 (MQ=39)
aaTCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAAc < 1:106266/150‑1 (MQ=39)
tCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGc > 1:1124717/1‑150 (MQ=39)
tCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGtt < 2:508906/122‑1 (MQ=17)
tGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTGTACAACAACGGTTCGACTGTCAGTGTAACCATCGAGAACGCCAc > 2:442414/1‑150 (MQ=255)
cccAGACGCCGGTGACAGTGACCCGGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg < 2:312482/69‑1 (MQ=255)
cccAGACGCCGGTGACAGTGACCCGGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg > 1:312482/1‑69 (MQ=255)
aGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcg < 2:579644/150‑1 (MQ=40)
gACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcgg < 1:92025/150‑1 (MQ=255)
gCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCAGTaa > 1:1113431/1‑150 (MQ=255)
gtgaccgtgaccCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACaacaac < 1:97697/102‑1 (MQ=11)
gtgaccgtgaccCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACaacaac > 2:97697/1‑102 (MQ=11)
aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg < 1:425947/150‑1 (MQ=255)
cAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGc > 2:1288570/1‑150 (MQ=40)
aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg > 1:800195/1‑148 (MQ=40)
aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg < 2:800195/148‑1 (MQ=40)
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GACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATC‑ACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGC > NC_002947/196180‑196475
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
