Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F83 I0 R1
|
969 |
96.3 |
4677704 |
94.6% |
4425107 |
134.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_002947 |
196,327 |
A→C |
24.8% |
T611T (ACA→ACC) |
PP_0168 → |
putative surface adhesion protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947 | 196,327 | 0 | A | C | 24.8%
| 231.4
/ 87.3
| 128 | T611T (ACA→ACC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (47/49); new base C (17/15); total (64/64) |
| Fisher's exact test for biased strand distribution p-value = 8.39e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01 |
Only 100 of 131 total aligned reads displayed.
CTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG > NC_002947/196178‑196474
|
tGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAg > 1:2069415/1‑150 (MQ=39)
ccccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGa < 1:168554/150‑1 (MQ=255)
cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc > 1:412570/1‑150 (MQ=255)
cccGAACCCGACGCCGGCTCAGACCACGATCAACGAATCGGTCGACACCACTACCGCGACCCTGACGGCGAGCTCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc > 1:286904/1‑150 (MQ=255)
gACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCaa > 2:147987/1‑150 (MQ=255)
gCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACgg < 2:1282028/150‑1 (MQ=255)
gCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACgg < 1:1086935/150‑1 (MQ=255)
cGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGcc > 1:1718173/1‑150 (MQ=255)
tCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAc < 1:147987/150‑1 (MQ=255)
aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAtt < 2:2010517/150‑1 (MQ=255)
cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc > 2:1342628/1‑150 (MQ=255)
cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc > 1:1606209/1‑150 (MQ=255)
cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc > 2:216720/1‑150 (MQ=255)
aCGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACTCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAcc < 1:351124/150‑1 (MQ=255)
aCGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc < 1:570719/126‑1 (MQ=255)
aCGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc > 2:570719/1‑126 (MQ=255)
gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGc < 1:1004776/136‑1 (MQ=255)
gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt > 2:1114498/1‑150 (MQ=255)
gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt < 1:1502308/150‑1 (MQ=40)
gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt > 2:1426755/1‑150 (MQ=255)
gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt > 2:475199/1‑150 (MQ=255)
aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 1:1342628/150‑1 (MQ=255)
tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTg > 1:1587704/1‑150 (MQ=255)
aaCGACTCGGTCGACACCACCCCCGCGGCCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑aa < 2:2290334/150‑1 (MQ=255)
aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGt > 1:1986175/1‑123 (MQ=255)
aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGt < 2:1986175/123‑1 (MQ=255)
cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACa < 2:1259023/109‑1 (MQ=255)
tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc < 2:352753/137‑1 (MQ=255)
tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc > 1:352753/1‑137 (MQ=255)
tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGc < 2:1606209/150‑1 (MQ=255)
ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCaa > 1:1592804/1‑150 (MQ=255)
tCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACTTTATGTGACGTGATCGCTGACCCCGGGACCCTGAGCAATCCGGCCCAGACGTCCGCTACAGTGAGCCTGTCCAATGGCCAAACCATTACCGTTG‑AAGCCGGCaaga < 2:877408/150‑3 (MQ=11)
tCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCATGAACAATCCTGCCCAGACGCCGGGTACAGTGTCCCGGGCCAACGTCCAAACCATTACCGTTG‑AAGCCGGCaaaa < 2:1433744/150‑1 (MQ=14)
caccacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAGACCCa < 1:698196/150‑1 (MQ=17)
accacTACCGCGACCCTGACGGCGAGCGCGCCGGCCAGCGAAGGGGGGGTAAACACTTAAACGGAAACTCTAAGCCATCGTGCCCACAGTCCCATGAAAGAAAAAATGTCCAAAGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAg > 2:1559212/1‑150 (MQ=9)
cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAGACCCAggg < 2:1875355/150‑1 (MQ=17)
cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAGACCCAggg > 1:639232/1‑150 (MQ=17)
accaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGc > 1:1142904/4‑150 (MQ=0)
ccGCGACCCTGACGGCGAGGCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAACCGCCAAAACCCAGGGCAGCg > 2:1686630/1‑150 (MQ=255)
gACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGa < 1:795471/150‑1 (MQ=255)
aCCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGAt < 1:151320/150‑1 (MQ=35)
tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 2:1587704/150‑1 (MQ=35)
gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 2:2257051/150‑1 (MQ=35)
gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 1:729883/150‑1 (MQ=35)
gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa > 2:2122583/1‑150 (MQ=11)
cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGa < 1:1224306/150‑1 (MQ=35)
ggCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAgg > 2:332056/1‑131 (MQ=255)
ggCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAgg < 1:332056/131‑1 (MQ=255)
gAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGc < 2:510522/118‑1 (MQ=32)
aGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCg < 2:2138590/150‑1 (MQ=11)
cccGTCGGTCACCGAAGGCGGCGTGATCACTTAAACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGc < 2:964780/150‑1 (MQ=11)
tCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAAt < 2:837917/150‑1 (MQ=11)
aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg < 2:1128266/138‑1 (MQ=37)
cGAAGGCGGCGTGATCACTTACACCGTGACCCTGCGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCCATTGCCAGACCCCGGCGAATGACGTCTa > 1:489172/1‑150 (MQ=255)
cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg < 2:2258225/136‑1 (MQ=37)
cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg > 1:2258225/1‑136 (MQ=37)
cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa > 1:1338751/1‑150 (MQ=35)
ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTc < 2:1767226/120‑1 (MQ=38)
ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTc > 1:1767226/1‑120 (MQ=38)
ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGACTAATGAGGTCTACaacaac > 2:1115750/1‑150 (MQ=255)
ggcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACaacaac > 1:490626/1‑150 (MQ=255)
gTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCGGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGt > 2:1685351/1‑150 (MQ=11)
gTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGt < 2:719737/150‑1 (MQ=255)
ttaTCACTTACACCGTGACCCTTAGCAATCCTGCTCAGACGCCGGTGACAGTGACCCTGTCAAACGGCCAAACCATTACCGTTG‑AAGCCGGTAATACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 2:1784152/148‑1 (MQ=11)
tGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 1:1114498/150‑1 (MQ=34)
tGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTc < 1:1905837/110‑1 (MQ=255)
tGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTc > 2:1905837/1‑110 (MQ=11)
tGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa < 2:2245655/139‑1 (MQ=11)
tGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 1:2122583/150‑1 (MQ=11)
aTCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCg > 1:2065859/1‑150 (MQ=255)
tCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 2:412570/150‑1 (MQ=35)
tCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa > 1:1964273/1‑150 (MQ=11)
aCTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCaaaa < 2:1884644/91‑1 (MQ=35)
aCTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt > 2:1727730/1‑150 (MQ=11)
ttACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 1:1882004/1‑150 (MQ=35)
ttACACCGTGACCCGGAGCAACCCTGACCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGAAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt < 2:1369429/150‑1 (MQ=11)
acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa < 1:457375/150‑1 (MQ=255)
acCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgt < 1:100848/150‑1 (MQ=37)
acCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCATGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgc > 1:516538/1‑149 (MQ=11)
cGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAggg < 2:2034440/90‑1 (MQ=35)
aCCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTACAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCAcc > 1:407447/1‑150 (MQ=11)
ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCAt < 2:1338751/150‑1 (MQ=39)
ccTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 2:490963/1‑131 (MQ=11)
ccTGAGCAACCCTGCCCAGACGCCGGTGACAATGCAGCTTGCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCAt > 1:1614775/1‑150 (MQ=11)
ccTGAGAAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 1:490963/131‑1 (MQ=11)
cTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCACCGGAACACCCTTTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATc < 2:1816024/150‑1 (MQ=11)
tGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa < 2:1265411/147‑1 (MQ=39)
tGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa > 1:1265411/1‑147 (MQ=38)
cAATCCTCCCCAGACGCCGGTGACAGTAACCCTGTCCACCGG‑AACACCAAGATCCTGGTTATTCGGCAAAACCCAGCGGAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGaa < 1:1686630/150‑1 (MQ=11)
tCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCAGGTTCCAGACCCCGGCGAATGACGTCTACAACAAGGGTTCGTCTCTTAGTGTCACCACCGAGAACGc > 1:2262845/1‑150 (MQ=11)
cccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 1:1220831/85‑1 (MQ=33)
cccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa > 2:1220831/1‑85 (MQ=35)
ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcgg > 1:888549/1‑150 (MQ=255)
ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcgg < 1:985009/150‑1 (MQ=255)
aGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcg > 1:864111/1‑150 (MQ=255)
ggTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa > 1:1669714/1‑96 (MQ=11)
ggTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa < 2:1669714/96‑1 (MQ=11)
ggTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa > 1:584108/1‑116 (MQ=11)
ggTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa < 2:584108/116‑1 (MQ=11)
tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 1:2201838/1‑105 (MQ=33)
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CTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAG > NC_002947/196178‑196474
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
