Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F80 I0 R1
|
1148 |
65.4 |
3296958 |
93.8% |
3092546 |
131.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| MC JC |
NC_002947 |
6,098,315 |
Δ9 bp |
100% |
coding (822‑830/867 nt) |
PP_5350 ← |
RpiR family transcriptional regulator |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_002947 |
6098315 |
6098323 |
9 |
92 [0] |
[0] 92 |
PP_5350 |
RpiR family transcriptional regulator |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_002947 |
6098324 = | 0 (0.000) | 72 (1.320) |
52/218 |
NT |
100% |
coding (821/867 nt) |
PP_5350 |
RpiR family transcriptional regulator |
| ? | NC_002947 |
= 6098314 |
0 (0.000) | coding (831/867 nt) |
PP_5350 |
RpiR family transcriptional regulator |
GATK/CNVnator alignment
N/A
