Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F83 I0 R1 969 96.3 4677704 94.6% 4425107 134.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
JC NC_002947 6,098,315 Δ9 bp 100% coding (822‑830/867 nt) PP_5350 ← RpiR family transcriptional regulator

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 6098324 =2 (0.020)96 (1.190) 69/226 NT 98.0% coding (821/867 nt) PP_5350 RpiR family transcriptional regulator
?NC_002947 = 6098314 2 (0.020)coding (831/867 nt) PP_5350 RpiR family transcriptional regulator

Only 100 of 117 total aligned reads displayed.

ACCTGGCGATCGACGTGCATGAAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6098480‑6098324
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagcttgcgTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGAAGAGGCCGG  <  NC_002947/6098314‑6098167
                                                                                                                                                                                                                                                                                                                 
ACCTGGCGATCGACGTGCATGAAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCA                                                                                                                                                             <  2:1039055/150‑1
             CGTGCATGAAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTC                                                                                                                                                <  2:1037403/150‑1
              GTGCATGAAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCG                                                                                                                                               <  2:2100340/150‑1
                GCATGAAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCC                                                                                                                                             <  2:2162930/150‑1
                  ATGAAGACACCGAGATTTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGCCGTGCTGGCCATGGGCGTTGCCATCGCGCGCGGGCCTAGCCTGGCCAACCACCTGAAGAGCGTGAAGCGCAGCTTGCGTCTCTCGCCCA                                                                                                                                           >  2:38340/1‑150
                   TGAAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAA                                                                                                                                          >  2:2190614/1‑150
                    GAAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAG                                                                                                                                         >  1:28951/1‑150
                    GAAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAG                                                                                                                                         >  1:1567192/1‑150
                      AGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTC                                                                                                                                       >  2:394636/1‑150
                       GACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCG                                                                                                                                      >  2:2071606/1‑150
                          ACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGGCTGTCGCCCAAGTCGATC                                                                                                                                   >  2:380033/1‑150
                            CGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAA                                                                                                                                 >  2:2197415/1‑150
                            CGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAA                                                                                                                                 >  1:1924027/1‑150
                            CGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGC                                                                                                                                                           <  2:13963/124‑1
                            CGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGC                                                                                                                                                           >  1:13963/1‑124
                             GAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAG                                                                                                                                <  1:394636/150‑1
                                ATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCT                                                                                                                             >  2:244739/1‑150
                                 TCTACACCCCCCTTCCCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTTAAGCGCTTGAAACGCAGCTTGCGTATGTCGCCCAAGTCGATCAAGGCTA                                                                                                                            <  1:115155/150‑1
                                 TCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTA                                                                                                                            <  1:312050/150‑1
                                  CTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTAC                                                                                                                           >  2:1971167/1‑150
                                  CTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTAC                                                                                                                           <  1:2197415/150‑1
                                   TACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACC                                                                                                                          >  1:803367/1‑150
                                   TACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGG                                                                                                                               >  1:53486/1‑145
                                   TACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGG                                                                                                                               <  2:53486/145‑1
                                        CCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGA                                                                                                                     >  1:1405895/1‑150
                                        CCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGA                                                                                                                     >  1:1995311/1‑150
                                        CCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGA                                                                                                                     <  2:28951/150‑1
                                         CCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGAC                                                                                                                    <  2:1567192/150‑1
                                            CTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGA                                                                                                                 <  2:2311275/150‑1
                                             TGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAA                                                                                                                <  1:2190614/150‑1
                                             TGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAA                                                                                                                <  2:443541/150‑1
                                             TGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAA                                                                                                                <  1:1323098/150‑1
                                                  ttGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCNTGCGTCNGTCGCCCAAGTCNATCAAGGCTACCGACGACTGAATTCAA                                                                                                           <  1:1426947/148‑1
                                                       TATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGT                                                                                                      <  1:200504/150‑1
                                                             CCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGC                                                                                                <  1:244739/150‑1
                                                             CCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGC                                                                                                >  2:2273838/1‑150
                                                             CCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGC                                                                                                <  1:1971167/150‑1
                                                                      GGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCG                                                                                       >  2:1060412/1‑150
                                                                      GGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCCTGAAAAGCAGCTTGCTTCTGTCTCCCAAGTCGAGCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCG                                                                                       <  2:2017207/150‑1
                                                                        TGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGG                                                                                     >  2:1217285/1‑150
                                                                        TGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGG                                                                                     >  2:314577/1‑150
                                                                        TGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGG                                                                                     >  1:1025357/1‑150
                                                                          ATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCT                                                                                   >  2:1565564/1‑150
                                                                          ATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCT                                                                                   >  2:152004/1‑150
                                                                            CGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTG                                                                                 >  2:1126019/1‑150
                                                                                 TGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGC                                                                            >  1:457461/1‑150
                                                                                     GGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCC                                                                         <  2:636537/149‑1
                                                                                     GGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCC                                                                         >  1:636537/1‑149
                                                                                        CATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGC                                                                                                <  2:1167319/123‑1
                                                                                        CATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGC                                                                                                >  1:1167319/1‑123
                                                                                            GGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTA                                                                 >  1:1078283/1‑150
                                                                                            GGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGC                                                                                                                                                           <  1:951471/60‑1
                                                                                               GTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTG                                                              >  1:509779/1‑150
                                                                                               GTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAA                                                                                                           >  2:1979309/1‑105
                                                                                               GTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAA                                                                                                           <  1:1979309/105‑1
                                                                                                TTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGCCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGT                                                             >  2:544909/1‑150
                                                                                                    CATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCAC                                                         <  1:314577/150‑1
                                                                                                        GCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCT                                                     <  1:1326760/150‑1
                                                                                                          GCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTAT                                                   <  2:509779/150‑1
                                                                                                          GCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTAT                                                   >  1:1607062/1‑150
                                                                                                              GGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAAT                                               >  2:1260947/1‑150
                                                                                                                 CCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGG                                            >  1:1513988/1‑150
                                                                                                                  CTAGCCTTGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGT                                           >  2:809989/1‑150
                                                                                                                  CTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGT                                           <  2:1513988/150‑1
                                                                                                                  CTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCCCTTCCACAGGTACTTTGCACTTCTATAAATCGGT                                           >  1:804963/1‑150
                                                                                                                     GCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGG                                                                                      >  2:830044/1‑104
                                                                                                                     GCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGG                                                                                      <  1:830044/104‑1
                                                                                                                      CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAA                                       <  2:1237369/150‑1
                                                                                                                      CCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAA                                       <  2:637790/150‑1
                                                                                                                         GGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTC                                    >  1:156729/1‑150
                                                                                                                          GTCAACCACCTGAAGAGCGTGAAACGGCGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCC                                   >  1:654173/1‑150
                                                                                                                           TCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCT                                  <  2:1995311/150‑1
                                                                                                                             AACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGT                                <  2:910650/150‑1
                                                                                                                             AACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGT                                <  1:2267750/150‑1
                                                                                                                             AACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAAC                                                                                                          >  1:11229/1‑76
                                                                                                                             AACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCAAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGT                                <  1:2273838/150‑1
                                                                                                                              ACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTTGTCTAGGTCCAGTTAACCTACCTACGACGGAATGCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTG                               >  1:1798258/1‑150
                                                                                                                               CCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGT                              >  1:2134210/1‑150
                                                                                                                               CCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGT                              >  2:1042482/1‑150
                                                                                                                               CCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTAAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGT                              >  1:282873/1‑150
                                                                                                                                 ACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATCAATCGGTGCAATTCCTGTGTGA                            >  2:483380/1‑150
                                                                                                                                 ACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCG                                             >  2:881894/1‑133
                                                                                                                                 ACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCG                                             <  1:881894/133‑1
                                                                                                                                      AAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGG                       <  2:2134210/150‑1
                                                                                                                                        GAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGG                       >  1:1689212/1‑148
                                                                                                                                        GAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGG                       <  2:1689212/148‑1
                                                                                                                                             TGAAACGCAGCTTGCGTCTGTTGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCCCTTCTATAAATCGGTGCAATTCCTGTTTGAACGGGGCAAGCC                >  1:843559/1‑150
                                                                                                                                             TGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGT                              <  1:310731/136‑1
                                                                                                                                             TGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGT                              >  2:310731/1‑136
                                                                                                                                              GAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCC               >  2:2294886/1‑150
                                                                                                                                               AAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCG              <  1:2042342/150‑1
                                                                                                                                                 ACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTCTAAATCGGTGCAATTCGGGTGTTAGCGGGGCAAGCCCGCa            >  2:1888382/1‑149
                                                                                                                                                 ACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTTCTGTGTGAACGGGGCAAGCCCGCG            >  1:330192/1‑150
                                                                                                                                                 ACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCG            >  1:809871/1‑150
                                                                                                                                                   GCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACA                                                                     >  1:1346626/1‑91
                                                                                                                                                   GCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACA                                                                     <  2:1346626/91‑1
                                                                                                                                                     AGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGAAGA        <  2:330192/150‑1
                                                                                                                                                     AGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGAAGA        <  1:1060412/150‑1
                                                                                                                                                       CTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGAAGAGG      >  2:1138092/1‑150
                                                                                                                                                          GCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGAAGAGGCCG   <  2:809871/150‑1
                                                                                                                                                                                                                                                                                                                 
ACCTGGCGATCGACGTGCATGAAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6098480‑6098324
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagcttgcgTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGAAGAGGCCGG  <  NC_002947/6098314‑6098167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A