Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F80 I0 R1
|
1105 |
125.4 |
6144758 |
94.6% |
5812941 |
133.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_002947 |
4,635,260 |
G→A |
27.7% |
T181I (ACT→ATT) |
uvrY ← |
BarA/UvrY two‑componenent system response regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947 | 4,635,260 | 0 | G | A | 27.7%
| 152.8
/ 74.3
| 108 | T181I (ACT→ATT) | uvrY | BarA/UvrY two‑componenent system response regulator |
| Reads supporting (aligned to +/- strand): ref base G (39/39); new base A (17/13); total (56/52) |
| Fisher's exact test for biased strand distribution p-value = 6.68e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.84e-01 |
Only 100 of 108 total aligned reads displayed.
TGCAGGTCGCCAGGAATGCGCTGGCATCAAAGACTTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCC > NC_002947/4635114‑4635403
|
tGCAGGTCGCCAGGAATGCGCTGGCATCAAAGACTTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTAt < 2:1445654/150‑1 (MQ=255)
aGGTCGCCAGGAATGCGCTGGCATCAAAGACTTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGa < 1:228476/150‑1 (MQ=255)
gTCGCCAGGAATGCGCTGGCATCAAAGACTTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACg > 1:1545731/1‑150 (MQ=255)
tCGCCAGGAATGCGCTGGCATCAAAGACTTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACgg > 1:2250452/1‑150 (MQ=255)
cAGGAATGCGCTGGCATCAAAGACTTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCtt > 1:2648348/1‑150 (MQ=255)
cAGGAATGCGCTGGCATCAAAGACTTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCtt < 2:1908676/150‑1 (MQ=255)
aGGAATGCGCTGGCATCAAAGACTTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTg > 1:1390095/1‑150 (MQ=255)
ggAATGCGCTGGCATCAAAGACTTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTgg < 2:1545731/150‑1 (MQ=255)
aTGCGCTGGCATCAAAGACTTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCg > 2:2065557/1‑150 (MQ=255)
cgcTGGCATCAAAGACTTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTGGGCgaga < 1:2629690/150‑1 (MQ=255)
tGGCATCAAAGACTTGGGACATGAGGTTGTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGACGCTGGTGACCGAGAGGTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGCggg > 2:203046/1‑149 (MQ=255)
gCATCAAAGACTTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGcac < 1:2618828/150‑1 (MQ=255)
tCAAAGACTTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGagag > 1:1778313/1‑143 (MQ=255)
tCAAAGACTTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGagag < 2:1778313/143‑1 (MQ=255)
aaaGACGTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGCACACCtt > 1:1792555/1‑150 (MQ=255)
aaGACTTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTg > 2:2176452/1‑150 (MQ=255)
aGACTTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGt > 1:1425987/1‑150 (MQ=255)
gACTTGGGAAATGAGGTTTTACAGACTTGCGTCAACCAGACCGTGGCGAACGGCCAGCAAGGTCAGTTCGTCCTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTc < 1:531923/150‑1 (MQ=255)
aCTTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACAGTGGCCAGCTGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGttg < 2:80990/150‑3 (MQ=255)
cTTGGGACATGAGGTTTTACAGGCACGGCGCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTTgg > 1:80990/1‑150 (MQ=255)
ttGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGga > 1:15666/1‑150 (MQ=255)
ttGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGCACAACTTGTCggg > 2:2030045/1‑149 (MQ=255)
ttGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCAAGGAAGGTGAGTTCGAGGTCGATGGTGACCGAGAGCTTTTCAAAGTTGCGATAACGGTAAGGATTGACGGTCTTGGGCGAGAGGCAAAACTTGTCGga > 1:1456090/1‑150 (MQ=255)
ttGGAACATGAGGTTTTACAGGCTTGCGTCAACCCTAATGCGACAAACGGCTAGCAAGGTCAGTTCGACGTCGCCCATGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGga < 1:1452983/150‑1 (MQ=255)
gggACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGgaga < 2:2250452/150‑1 (MQ=255)
aTGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATc < 1:2580071/150‑1 (MQ=255)
tGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGACCCGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAAGCACAACTTGTCGGAGATGATCt < 1:1696795/150‑1 (MQ=255)
gAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTg > 2:2168159/1‑150 (MQ=255)
ggTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCa < 2:1548994/150‑1 (MQ=255)
ggTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCt > 1:2398455/1‑114 (MQ=255)
ggTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCt < 2:2398455/114‑1 (MQ=255)
aCAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCt > 1:2542219/1‑150 (MQ=255)
ggCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGc < 1:2428852/150‑1 (MQ=255)
gCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCa > 2:2984997/1‑150 (MQ=255)
gCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCa > 2:683319/1‑150 (MQ=255)
ttGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGc > 1:2951491/1‑150 (MQ=255)
cGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTggg > 1:763392/1‑103 (MQ=255)
cGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTggg < 2:763392/103‑1 (MQ=255)
cGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCg > 2:2998188/1‑122 (MQ=255)
cGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCg < 1:2998188/122‑1 (MQ=255)
cGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATTATCTGCACTTTCTGGCCGc < 2:1247590/147‑1 (MQ=255)
cGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGc > 1:1247590/1‑147 (MQ=255)
cGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCcga < 1:2267013/150‑1 (MQ=255)
cGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCcga < 1:485783/150‑1 (MQ=255)
gTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGCACAACTTGTc > 1:2507661/1‑120 (MQ=255)
gTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGCACAACTTGTc < 2:2507661/120‑1 (MQ=255)
tCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCcgacg > 1:2711510/1‑150 (MQ=255)
tCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAAGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCcgacg > 2:2206135/1‑150 (MQ=255)
aCCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGCCCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGatc < 1:2984997/150‑1 (MQ=255)
aCCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAAc > 2:276733/1‑111 (MQ=255)
aCCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAAc < 1:276733/111‑1 (MQ=255)
aCCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGatc > 1:2962573/1‑150 (MQ=255)
aTACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGCAAGAGCGTTTTTCAACGATCCGATAACGGTAAGTATTGACGGTCTTGGTCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGatcatc < 2:2648348/150‑1 (MQ=255)
aTACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCa < 2:528277/137‑1 (MQ=255)
aTACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCa > 1:528277/1‑137 (MQ=255)
tACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGAtcatca < 1:1627032/150‑1 (MQ=255)
cGTGGCGAACGGCAAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATACGTTCACCTTGGGTGTTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAggg < 1:2065557/150‑1 (MQ=255)
gAACGGCCAGCACGGTCAGTTCGACGTCGCTTGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCt > 2:2654750/1‑150 (MQ=255)
gAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAAGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCt > 2:116517/1‑150 (MQ=255)
aaCGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAgg > 1:3024217/1‑91 (MQ=255)
cAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAAGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTc < 1:116517/150‑1 (MQ=255)
aGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTTTTTTTTTTTTTAACGGTAAGTATTGACGGTCTTGGGCGAGTGGCACAACTTGTCGGAGATGATCTCCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTcc > 2:604780/1‑150 (MQ=255)
cAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCANAGATCCNATAACGGTAAGTATTGACGGTCTTGGGCGAGAAGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCg > 1:2449405/1‑150 (MQ=255)
ccgTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGa < 1:703437/148‑1 (MQ=255)
ttCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGc < 1:130629/67‑1 (MQ=255)
ttCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGc > 2:130629/1‑67 (MQ=255)
ttCGACGTCGCTGGTGACCGAGAGATTTTTTTTTTTTTTTTAACGGTAAGTATTGACGGTCTTTGGCGAGTGGTACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGCCGCTCATCAGGTCAATCTGGATTTCCCGTTCGGTCaa > 2:373835/1‑150 (MQ=255)
gACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAAGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAAcgc < 1:2206135/150‑1 (MQ=255)
gACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAAcgc > 2:3041141/1‑150 (MQ=255)
gACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGCAAAACTTGACGCCGAGTATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAAcgc > 1:969140/1‑150 (MQ=255)
gTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTc < 2:2542219/150‑1 (MQ=255)
tGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGTTCTTGGGCGAGAGGCACAACTCGAAGGATATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATCTCCCGTTCGGACAACGCGTCGAACg < 1:203046/150‑1 (MQ=255)
tGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTg < 1:1902276/121‑1 (MQ=255)
tGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTg > 2:1902276/1‑121 (MQ=255)
gTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGga < 2:2711510/150‑1 (MQ=255)
aCCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTgg > 2:550199/1‑90 (MQ=255)
aCCGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTgg < 1:550199/90‑1 (MQ=255)
cGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGga < 2:1977079/145‑1 (MQ=255)
cGAGAGTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGga > 1:1977079/1‑145 (MQ=255)
gagaGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTc < 1:1066706/84‑1 (MQ=255)
gagaGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTc > 2:1066706/1‑84 (MQ=255)
gagaGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGtt < 2:1696967/124‑1 (MQ=255)
gagaGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGtt > 1:1696967/1‑124 (MQ=255)
gagaGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGAcccc > 2:2066986/1‑150 (MQ=255)
gagaGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGAcccc > 1:1085359/1‑150 (MQ=255)
gTTTTTCAAAGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAggg < 2:698547/102‑1 (MQ=255)
tttttCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTg > 2:2094502/1‑72 (MQ=255)
tttttCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTg < 1:2094502/72‑1 (MQ=255)
tttCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGcc < 2:1085359/150‑2 (MQ=255)
tttCAAAGATCCGATAACGATAAGTATTGACGGTCTTGGCCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGGAATCTGGTTTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCt < 1:1473939/150‑1 (MQ=255)
cAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGga < 1:566163/134‑1 (MQ=255)
cAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGga > 2:566163/1‑134 (MQ=255)
aaaGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGaa > 2:2290741/1‑150 (MQ=255)
aaaGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGaa > 2:426877/1‑150 (MQ=255)
aaGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGTCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAAc > 2:2684598/1‑150 (MQ=255)
aGATCCGATAACGGTAAATATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACg > 2:846704/1‑150 (MQ=255)
gATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCa > 1:1006173/1‑150 (MQ=255)
gATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGAAACGGCTTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCa > 1:162484/1‑150 (MQ=255)
tAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAgc < 2:1390095/150‑1 (MQ=255)
cGGTAAATATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGcc < 1:1635505/150‑1 (MQ=255)
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TGCAGGTCGCCAGGAATGCGCTGGCATCAAAGACTTGGGACATGAGGTTTTACAGGCTTGCGTCAACCATACCGTGGCGAACGGCCAGCAAGGTCAGTTCGACGTCGCTGGTGACCGAGAGTTTTTCAAAGATCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCC > NC_002947/4635114‑4635403
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
