Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F83 I0 R1
|
969 |
96.3 |
4677704 |
94.6% |
4425107 |
134.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_002947 |
196,351 |
C→G |
26.5% |
T619T (ACC→ACG) |
PP_0168 → |
putative surface adhesion protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947 | 196,351 | 0 | C | G | 26.5%
| 257.9
/ 100.6
| 132 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (49/48); new base G (19/16); total (68/64) |
| Fisher's exact test for biased strand distribution p-value = 8.44e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.52e-01 |
Only 100 of 132 total aligned reads displayed.
ACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACG > NC_002947/196205‑196495
|
aCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAtt < 2:2010517/150‑1 (MQ=255)
cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc > 2:329999/1‑150 (MQ=255)
cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc > 2:1342628/1‑150 (MQ=255)
cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc > 1:1606209/1‑150 (MQ=255)
aCGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACTCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAcc < 1:351124/150‑1 (MQ=255)
gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCGAAACCATTACCGt > 1:486148/1‑150 (MQ=255)
gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt > 2:1114498/1‑150 (MQ=255)
gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt < 1:1502308/150‑1 (MQ=40)
gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt > 2:1426755/1‑150 (MQ=255)
aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 1:1342628/150‑1 (MQ=255)
tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTg > 1:1587704/1‑150 (MQ=255)
aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑aa > 2:521714/1‑150 (MQ=255)
aaCGACTCGGTCGACACCACCCCCGCGGCCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑aa < 2:2290334/150‑1 (MQ=255)
cGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGc > 1:402495/1‑150 (MQ=255)
tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc < 2:352753/137‑1 (MQ=255)
tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc > 1:352753/1‑137 (MQ=255)
tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGc < 2:1606209/150‑1 (MQ=255)
ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCaa > 1:1592804/1‑150 (MQ=255)
tCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACTTTATGTGACGTGATCGCTGACCCCGGGACCCTGAGCAATCCGGCCCAGACGTCCGCTACAGTGAGCCTGTCCAATGGCCAAACCATTACCGTTG‑AAGCCGGCaaga < 2:877408/150‑3 (MQ=11)
tCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCATGAACAATCCTGCCCAGACGCCGGGTACAGTGTCCCGGGCCAACGTCCAAACCATTACCGTTG‑AAGCCGGCaaaa < 2:1433744/150‑1 (MQ=14)
cGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAGAc < 2:1718173/150‑1 (MQ=38)
cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAGACCCAggg < 2:1875355/150‑1 (MQ=17)
cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAGACCCAggg > 1:639232/1‑150 (MQ=17)
cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAggg < 2:1924826/150‑1 (MQ=38)
ccGCGACCCTGACGGCGAGGCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAACCGCCAAAACCCAGGGCAGCg > 2:1686630/1‑150 (MQ=255)
cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGt < 1:329999/150‑1 (MQ=35)
gACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGa < 1:795471/150‑1 (MQ=255)
aCCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGAt < 1:151320/150‑1 (MQ=35)
cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTc < 2:1872942/150‑1 (MQ=35)
tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 2:1587704/150‑1 (MQ=35)
tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTcc < 1:1621566/150‑1 (MQ=11)
gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 1:729883/150‑1 (MQ=35)
gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa > 2:2122583/1‑150 (MQ=11)
cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGa < 1:1224306/150‑1 (MQ=35)
ggCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGAc > 2:457375/1‑150 (MQ=255)
gAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGc > 1:510522/1‑118 (MQ=33)
gAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGc < 2:510522/118‑1 (MQ=32)
aGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCg < 2:2138590/150‑1 (MQ=11)
cccGTCGGTCACCGAAGGCGGCGTGATCACTTAAACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGc < 2:964780/150‑1 (MQ=11)
gTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGaa > 2:2051855/1‑150 (MQ=35)
gTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAcc < 2:1536580/96‑1 (MQ=34)
aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg < 2:1128266/138‑1 (MQ=37)
aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg > 1:1128266/1‑138 (MQ=37)
cGAAGGCGGCGTGATCACTTACACCGTGACCCTGCGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCCATTGCCAGACCCCGGCGAATGACGTCTa > 1:489172/1‑150 (MQ=255)
cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg > 1:2258225/1‑136 (MQ=37)
cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg < 2:2258225/136‑1 (MQ=37)
cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa > 1:1338751/1‑150 (MQ=35)
aaGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTaca > 2:833999/1‑150 (MQ=35)
ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTc > 1:1767226/1‑120 (MQ=38)
ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTc < 2:1767226/120‑1 (MQ=38)
ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGACTAATGAGGTCTACaacaac > 2:1115750/1‑150 (MQ=255)
gTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCGGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGt > 2:1685351/1‑150 (MQ=11)
gTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGt < 2:719737/150‑1 (MQ=255)
ttaTCACTTACACCGTGACCCTTAGCAATCCTGCTCAGACGCCGGTGACAGTGACCCTGTCAAACGGCCAAACCATTACCGTTG‑AAGCCGGTAATACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 2:1784152/148‑1 (MQ=11)
tGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 1:1114498/150‑1 (MQ=34)
tGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTc < 1:1905837/110‑1 (MQ=255)
tGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa < 2:2245655/139‑1 (MQ=11)
tGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa > 1:2245655/1‑139 (MQ=11)
tGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 1:2122583/150‑1 (MQ=11)
aTCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCg > 1:2065859/1‑150 (MQ=255)
tCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 2:412570/150‑1 (MQ=35)
tCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa > 1:1964273/1‑150 (MQ=11)
aCTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCaaaa > 1:1884644/1‑91 (MQ=35)
aCTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCaaaa < 2:1884644/91‑1 (MQ=35)
ttACACCGTGACCCGGAGCAACCCTGACCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGAAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt < 2:1369429/150‑1 (MQ=11)
acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa < 1:457375/150‑1 (MQ=255)
tccttGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgc > 1:672242/5‑149 (MQ=11)
acCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgt < 1:100848/150‑1 (MQ=37)
acCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCATGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgc > 1:516538/1‑149 (MQ=11)
ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCAt > 2:1285131/1‑150 (MQ=39)
ccTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 2:490963/1‑131 (MQ=11)
ccTGAGAAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 1:490963/131‑1 (MQ=11)
tGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa < 2:1265411/147‑1 (MQ=39)
cAATCCTCCCCAGACGCCGGTGACAGTAACCCTGTCCACCGG‑AACACCAAGATCCTGGTTATTCGGCAAAACCCAGCGGAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGaa < 1:1686630/150‑1 (MQ=11)
tCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCAGGTTCCAGACCCCGGCGAATGACGTCTACAACAAGGGTTCGTCTCTTAGTGTCACCACCGAGAACGc > 1:2262845/1‑150 (MQ=11)
cccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa < 1:1220831/85‑1 (MQ=33)
cccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCa > 2:1220831/1‑85 (MQ=35)
ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcgg < 1:985009/150‑1 (MQ=255)
ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcgg > 1:888549/1‑150 (MQ=255)
aGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcg > 1:864111/1‑150 (MQ=255)
tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 2:2201838/105‑1 (MQ=33)
tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 1:2201838/1‑105 (MQ=33)
aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAg < 1:1426755/150‑1 (MQ=255)
gTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTc < 2:656794/114‑1 (MQ=37)
gTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTc > 1:656794/1‑114 (MQ=35)
gTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCaa > 1:1827574/1‑150 (MQ=39)
gACCCTATCCAACGGCCAAACCATTACCGTTT‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACt < 1:1633794/150‑1 (MQ=255)
cccTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGa > 2:1794642/1‑150 (MQ=39)
ccTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAc > 2:1982387/1‑150 (MQ=38)
cTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAcc < 1:1285131/150‑1 (MQ=39)
cAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGaa > 2:1047916/1‑150 (MQ=38)
cAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGaa > 2:1934597/1‑150 (MQ=38)
cAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCATCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGaa > 1:1236824/1‑150 (MQ=255)
aCGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 2:2247326/133‑1 (MQ=40)
ccAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATc > 2:1345114/1‑103 (MQ=38)
cAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAAt < 1:1028658/144‑1 (MQ=39)
cAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACg > 1:703061/1‑150 (MQ=255)
cAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACg > 2:927717/1‑150 (MQ=255)
aaaCGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 2:1622898/1‑81 (MQ=255)
aaaCGATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 1:1622898/81‑1 (MQ=255)
|
ACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG‑AAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACG > NC_002947/196205‑196495
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
