Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F83 I0 R1 969 96.3 4677704 94.6% 4425107 134.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,691,825 C→A 20.4% intergenic (+50/‑121) PP_1487 → / → PP_1488 hypothetical protein/methyl‑accepting chemotaxis transducer

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,691,8250CA20.4% 196.4 / 38.9 88intergenic (+50/‑121)PP_1487/PP_1488hypothetical protein/methyl‑accepting chemotaxis transducer
Reads supporting (aligned to +/- strand):  ref base C (39/31);  new base A (9/9);  total (48/40)
Fisher's exact test for biased strand distribution p-value = 7.92e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.07e-01

GCGTGCCTACCTGGACGAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGACCTTGCGCCAACGGAT  >  NC_002947/1691682‑1691974
                                                                                                                                                |                                                                                                                                                     
gCGTGCCTACCTGGACGAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCCCGAGCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTgcg                                                                                                                                                 >  1:613924/1‑150 (MQ=255)
  gTGCCTACCTGGACGAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTgcggc                                                                                                                                               <  1:388507/150‑1 (MQ=255)
        aCCTGGACGAGCTGGCCAGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCACGGGCGGCGCTcga                                                                                                                                         <  1:1871861/150‑3 (MQ=255)
         ccTGGACGAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGt                                                                                                                                        >  2:1148282/1‑150 (MQ=255)
          cTGGACGAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGtc                                                                                                                                       <  1:789805/150‑1 (MQ=255)
           tGGACGAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGtct                                                                                                                                      >  1:434332/1‑150 (MQ=255)
              aCGAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCCGGTGCGGTTGGCTACAGCGTAGTGGCGGTGCTTGCAACGGCCTATTGAGCGGCTGTGAGATCGAGC‑GCCGGCCGTGCGGCGCTCCGTCTcac                                                                                                                                   >  2:635816/1‑150 (MQ=255)
                gAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAg                                                                                                                                 >  2:769618/1‑150 (MQ=255)
                gAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAg                                                                                                                                 <  2:44221/150‑1 (MQ=255)
                  gCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGgc                                                                                                                               <  1:411702/150‑1 (MQ=255)
                        ccGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGTGCGCCTGTGAGACGGAGC‑GCCGCACGGGCGGCGCTcgat                                                                                                                                        <  1:1494989/135‑4 (MQ=38)
                        ccGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGTGCGCCTGTGAGACGGAGC‑GCCGCACGGGCGGCGCTcgat                                                                                                                                        >  2:1494989/1‑132 (MQ=38)
                         cGCCAGCTGCGGCTGGAGCCGGGCTTGCGCCAGGACGTGGAAAGGCAGTGCCGGACGGCTGCAGCGTAGTGGCGGGTATTGCCATCGATTATTGCGAGGCTGTGAGCATGTGC‑GCCGGCCGTGCGTTGCACCTTCGCACAGGCGCgaaaa                                                                                                                        >  2:40647/1‑149 (MQ=255)
                            cAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTcc                                                                                                                     >  1:112488/1‑150 (MQ=255)
                             aGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCt                                                                                                                    <  2:51880/150‑1 (MQ=255)
                                tGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTcac                                                                                                                                   >  1:873790/1‑132 (MQ=255)
                                tGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTcac                                                                                                                                   <  2:873790/132‑1 (MQ=255)
                                     cTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCTGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAACTTCCTGACGACaa                                                                                                            <  2:1255576/150‑1 (MQ=255)
                                      tGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAAt                                                                                                           <  1:2069789/150‑1 (MQ=255)
                                       ggACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATc                                                                                                          <  2:436703/150‑1 (MQ=255)
                                         aCCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATcac                                                                                                        <  1:769618/150‑1 (MQ=255)
                                          cccGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATcaca                                                                                                       >  2:1488524/1‑150 (MQ=255)
                                           ccGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTTAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACAt                                                                                                      <  2:1135911/150‑1 (MQ=255)
                                           ccGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTga                                                                                                                  >  1:1028643/1‑138 (MQ=255)
                                           ccGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTga                                                                                                                  <  2:1028643/138‑1 (MQ=255)
                                           ccGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACAt                                                                                                      <  2:1863273/150‑1 (MQ=255)
                                           ccGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACAt                                                                                                      <  2:424841/150‑1 (MQ=255)
                                           ccGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGACGGAGC‑GCCGCACGGGCGGCGCTCGATCTCACAg                                                                                                                                 >  2:1087274/1‑123 (MQ=25)
                                           ccGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGACGGAGC‑GCCGCACGGGCGGCGCTCGATCTCACAg                                                                                                                                 <  1:1087274/123‑1 (MQ=25)
                                           ccGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGACATCAAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACCGGCGCAAAAGTCCTGACGACAATCACAt                                                                                                      >  1:25907/1‑150 (MQ=255)
                                              ggCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCaa                                                                                                   <  1:1409963/150‑1 (MQ=255)
                                                cTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATa                                                                                                 <  2:112488/150‑1 (MQ=255)
                                                    cgcCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGt                                                                                             <  1:1148282/150‑1 (MQ=255)
                                                     gcCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGCGCT‑AAGCGGCCGTCCGTGCGGCGCTCCGTCTCCCAGGCGCAACCTATGGCACTACAGTCACATCAATACCGTa                                                                                            >  1:633326/1‑150 (MQ=255)
                                                     gcCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTa                                                                                            >  1:1525888/1‑150 (MQ=255)
                                                         ggAACTGGAAAGCCAGGTGCGGTTTGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGAc                                                                                        <  1:588395/150‑1 (MQ=255)
                                                             cTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGCCAATCACATCAATACCGTAAGACctct                                                                                    <  2:209658/150‑1 (MQ=255)
                                                              tGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTg                                                                                   >  1:415441/1‑150 (MQ=255)
                                                              tGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTg                                                                                   >  1:1962077/1‑150 (MQ=255)
                                                               ggAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGACGGAGC‑GCCGCACGGGCGGCGCTCGATCTCACAGgcgc                                                                                                                             >  2:2288055/1‑107 (MQ=21)
                                                               ggAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGACGGAGC‑GCCGCACGGGCGGCGCTCGATCTCACAGgcgc                                                                                                                             <  1:2288055/107‑1 (MQ=21)
                                                                gAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAg                                                                                                                                 <  1:1841728/102‑1 (MQ=255)
                                                                gAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAg                                                                                                                                 >  2:1841728/1‑102 (MQ=255)
                                                                 aaaGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGCGA‑GCCAGCTGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGc                                                                                >  1:282455/1‑150 (MQ=255)
                                                                        ggTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACtt                                                                         <  2:415441/150‑1 (MQ=255)
                                                                           gctgTTGGCTGCAGCATCGTGCCGGTGCTAGCCTCCGCCGATCATGCGGTCGTGATATCGAGC‑CCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCgg                                                                      <  2:613924/147‑1 (MQ=255)
                                                                           gCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCgg                                                                      <  1:1999399/150‑1 (MQ=255)
                                                                             ggTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATAACGTAAGACCTCTGGGCTATACTTCGGCg                                                                    >  2:375262/1‑150 (MQ=255)
                                                                              gTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGa                                                                   <  2:1962077/150‑1 (MQ=255)
                                                                                    tGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGAGGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTc                                                             >  1:850454/1‑150 (MQ=255)
                                                                                    tGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTAGGCTATACTTCGGCGagtggtc                                                             >  2:133768/1‑144 (MQ=255)
                                                                                      cAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGACGGAGC‑GCCGCACGGGCGGCGCTcgat                                                                                                                                        <  1:2005398/73‑4 (MQ=17)
                                                                                      cAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGACGGAGC‑GCCGCACGGGCGGCGCTcgat                                                                                                                                        >  2:2005398/1‑70 (MQ=17)
                                                                                        gCGTAGTGGCGGTGCTTGCCACGGCCTATT‑AGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAg                                                                                                                                 >  2:302152/1‑77 (MQ=255)
                                                                                        gCGTAGTGGCGGTGCTTGCCACGGCCTATT‑AGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAg                                                                                                                                 <  1:302152/77‑1 (MQ=255)
                                                                                                gCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTtgtg                                                 >  1:1808058/1‑150 (MQ=255)
                                                                                                      cTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAAt                                                                                                  >  1:1622487/1‑95 (MQ=255)
                                                                                                      cTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAAt                                                                                                  <  2:1622487/95‑1 (MQ=255)
                                                                                                      cTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTcc                                           >  2:1949544/1‑150 (MQ=255)
                                                                                                      cTTCCCACGGCCTATTGACCGCCTTTGAGATCGAGC‑GCCGCACGGCCGGCGCTACGTCTCAAAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTcc                                           <  2:850454/150‑1 (MQ=255)
                                                                                                           cACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACctct                                                                                    <  2:1507007/104‑1 (MQ=255)
                                                                                                           cACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACctct                                                                                    >  1:1507007/1‑104 (MQ=255)
                                                                                                           cACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAgg                                      >  2:1446028/1‑150 (MQ=255)
                                                                                                               gCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTg                                  <  2:1525888/150‑1 (MQ=255)
                                                                                                                  tATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACGGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAAt                               >  1:977920/1‑150 (MQ=255)
                                                                                                                  tATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAAt                               <  1:2142062/150‑1 (MQ=255)
                                                                                                                   aTTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAAtg                              >  1:1039731/1‑150 (MQ=255)
                                                                                                                    ttttgcgcCTGTGAGACGGAGC‑GCCGCACGGGCGGCGCTCGATCTCACAGGCGCGAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTc                                            >  2:354532/5‑135 (MQ=21)
                                                                                                                    ttttgcgcCTGTGAGACGGAGC‑GCCGCACGGGCGGCGCTCGATCTCACAGGCGCGAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTc                                            <  1:354532/131‑1 (MQ=21)
                                                                                                                        ccgcCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTgaag                         >  2:859486/2‑150 (MQ=255)
                                                                                                                         cgcCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTgaaga                        >  2:286630/1‑150 (MQ=255)
                                                                                                                           ccTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAAc                      >  1:1198492/1‑150 (MQ=255)
                                                                                                                            cTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACt                     >  1:445644/1‑150 (MQ=255)
                                                                                                                            cTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACt                     >  1:2224079/1‑150 (MQ=255)
                                                                                                                            cTGTGAGACGGAGC‑GCCGCACGGGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACt                     <  2:2189846/150‑1 (MQ=39)
                                                                                                                            cTGTGAGACGGAGC‑GCCGCACGGGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACt                     >  1:2189846/1‑150 (MQ=39)
                                                                                                                             tgtgAGACGGAGC‑GCCGCACGGGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTc                                            <  2:2337574/126‑1 (MQ=38)
                                                                                                                             tgtgAGACGGAGC‑GCCGCACGGGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTc                                            >  1:2337574/1‑126 (MQ=38)
                                                                                                                              gtgAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTgg                   >  2:771826/1‑150 (MQ=255)
                                                                                                                               tgagacggAGC‑GCCGCACGGGCGGCGCTCGATCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGa                  >  1:1166386/8‑150 (MQ=38)
                                                                                                                                 agaTCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGAcc                >  1:435119/1‑150 (MQ=255)
                                                                                                                                 agaTCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGAcc                >  2:871198/1‑150 (MQ=255)
                                                                                                                                  gaTCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTc                                                             <  2:644473/104‑1 (MQ=255)
                                                                                                                                  gaTCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTc                                                             >  1:644473/1‑104 (MQ=255)
                                                                                                                                  gaTCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGACCt               >  2:290419/1‑150 (MQ=255)
                                                                                                                                   aTCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGACCtt              >  1:1432374/1‑150 (MQ=255)
                                                                                                                                     ggAGC‑GCCGCACGGGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGACCTTgc            >  2:930364/2‑150 (MQ=255)
                                                                                                                                       aGC‑GCCGCCCGTGCCCCGTCCCGTCGCACAGGCGCAAAAGTCCTGACGACAGCCACATCAATACCGTAATTCCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCGGAATGTGAACAACTGGACCTTgcgc          <  1:40647/150‑1 (MQ=255)
                                                                                                                                            ccgccCGTGCGGCGCTCCGTCTCACAGGCGCAAAAGTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTTGACCTTGCGCCAAc      <  1:1488524/150‑1 (MQ=255)
                                                                                                                                                ccGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGACCTTGCGCCAACGGAt  >  1:441081/1‑150 (MQ=255)
                                                                                                                                                |                                                                                                                                                     
GCGTGCCTACCTGGACGAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTGCGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGC‑GCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGACCTTGCGCCAACGGAT  >  NC_002947/1691682‑1691974

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A