Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F80 I5 R1
|
8 |
61.1 |
2932718 |
95.1% |
2789014 |
135.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947 |
1,850,958 |
T→A |
M1K (ATG→AAG) † |
relA → |
ATP:GTP 3'‑pyrophosphotransferase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947 | 1,850,958 | 0 | T | A | 98.3%
| 178.7
/ NA
| 58 | M1K (ATG→AAG) † | relA | ATP:GTP 3'‑pyrophosphotransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base A (24/33); minor base G (1/0); total (25/33) |
| Fisher's exact test for biased strand distribution p-value = 4.31e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGCGAGTTTGCTCTTGAGGTAGAG > NC_002947/1850822‑1851100
|
gcgcATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTgaga < 2:1197669/150‑1 (MQ=255)
cATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTg < 1:584557/150‑1 (MQ=255)
tGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCa > 2:1109794/1‑150 (MQ=255)
gTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCAc < 2:1319775/150‑1 (MQ=255)
ggCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCAAGGAAGGGCGGCCGCACGGTGATCGCAAGCACACGCGTA‑TGGTGTGCGGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCaa < 2:166537/150‑1 (MQ=255)
ttATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGAGGTTGCCCCGGAAGGGGGGACCGGCGGTGATCCCTTGCGCGCTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACt > 1:1277521/1‑150 (MQ=255)
ttCGAAGTGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAAGTAAAACAAAGAAGGTACAGCGGTCAGGGCACCAGCCGGTCAACACTGAc < 1:1139300/150‑1 (MQ=255)
aaGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCa < 2:1237908/150‑1 (MQ=255)
cGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTa < 1:493357/150‑1 (MQ=255)
ggCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATc > 1:242930/1‑150 (MQ=255)
cTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGAGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCaa < 1:1042692/150‑1 (MQ=255)
cTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAAtctc < 1:1444257/150‑1 (MQ=255)
aCTGGCCCCTTGGTGCGGTTGCCGCTGTAGGGCGCCTGCTCTTTTATCGCCAGCACACTCGTACTGGAGTTCAG‑ACGTAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGaa < 1:622621/150‑1 (MQ=255)
aCTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGaa < 1:114430/150‑1 (MQ=255)
cccTTGGTGCGGTTGCCACTGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATgg > 1:1442900/1‑150 (MQ=255)
cccTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAacac < 2:313479/122‑1 (MQ=255)
cccTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAacac > 1:313479/1‑122 (MQ=255)
ggTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCAtg > 2:120035/1‑150 (MQ=255)
gTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCAtgt < 1:120035/150‑1 (MQ=255)
ccACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCg > 1:1165506/1‑99 (MQ=255)
ccACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCg < 2:1165506/99‑1 (MQ=255)
cACGGAAGGGCGGCCGCACGGTGATCGCCAGCACCCTCGTA‑TCGAGGGTCACAAGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTaa > 1:28852/1‑150 (MQ=255)
gcggcCGCACGGTGATCGCCAGCACACGGGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTTGAAGCATGGTTGGACCATGTGGTAAGCGTCGAtt < 1:374112/150‑1 (MQ=255)
ggcCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCg < 1:1109794/150‑1 (MQ=255)
aCGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGAAAAGGAAAAACAAACAAGTTACAGGTGAGAGTGCACCAGCCGGTAAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTg < 2:535066/150‑1 (MQ=255)
tGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATc < 2:242930/150‑1 (MQ=255)
gCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCa > 2:598896/1‑150 (MQ=255)
ccAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAg > 1:86192/1‑150 (MQ=255)
ccAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAg > 1:86847/1‑150 (MQ=255)
cAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAgc > 2:888455/1‑150 (MQ=255)
acTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAGGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGaa > 2:855142/1‑150 (MQ=255)
acTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATgg > 2:1391327/1‑100 (MQ=255)
acTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATgg < 1:1391327/100‑1 (MQ=255)
acTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGaa > 2:841468/1‑150 (MQ=255)
gTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAaagaa < 1:738624/150‑1 (MQ=255)
gTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAaagaa < 2:86847/150‑1 (MQ=255)
gTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAaagaa < 2:86192/150‑1 (MQ=255)
tGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTa > 2:281992/1‑108 (MQ=255)
tGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTa < 1:281992/108‑1 (MQ=255)
tGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTc > 2:1024251/1‑119 (MQ=255)
tGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTc < 1:1024251/119‑1 (MQ=255)
ggTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCt < 2:1277521/150‑1 (MQ=255)
tgtgCTGCATGGAAAGGTAAAACAAAGAAGGTCCAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGc > 1:1379030/1‑150 (MQ=255)
ttgcATGGAAAGGTAAAACAAAGAAGGTATAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGCGAGt < 2:541074/149‑1 (MQ=255)
gtgcATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAaagaa < 1:1346515/139‑1 (MQ=255)
ctgcATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAaagaa > 2:1346515/1‑140 (MQ=255)
tgcATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTGAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGCGAGtt > 1:323041/1‑150 (MQ=255)
tGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCgg < 1:373673/109‑1 (MQ=255)
tGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCgg > 2:373673/1‑109 (MQ=255)
ggAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGCGAGTTTGctc < 1:841468/150‑1 (MQ=255)
aaaGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTc < 1:1131055/104‑1 (MQ=255)
aaaGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTc > 2:1131055/1‑104 (MQ=255)
aaaGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGCGAGTTTGCTCtt < 1:888455/150‑1 (MQ=255)
aGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGCGAGTTTGCTCTTGa < 1:598896/150‑1 (MQ=255)
gTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCt > 1:1248099/1‑121 (MQ=255)
gTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCt < 2:1248099/121‑1 (MQ=255)
gTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGCGAGTTTGCTCTTGAgg > 1:1086670/1‑150 (MQ=255)
aCAAAGAAGGAACAGGTGAGAGTGCAAAAACCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGCGAGTTTGCTCTTGAGGTagag > 2:56417/1‑150 (MQ=255)
|
GCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTA‑TGGTGTGCTGCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGCGAGTTTGCTCTTGAGGTAGAG > NC_002947/1850822‑1851100
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A