Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F91 I5 R1
|
6 |
62.9 |
3170796 |
93.7% |
2971035 |
131.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947 |
1,851,762 |
C→G |
S269W (TCG→TGG) |
relA → |
ATP:GTP 3'‑pyrophosphotransferase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947 | 1,851,762 | 0 | C | G | 100.0%
| 204.3
/ NA
| 60 | S269W (TCG→TGG) | relA | ATP:GTP 3'‑pyrophosphotransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (30/30); total (30/30) |
AGTACAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTCGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTTGTGGCGGCATATTCCCAAGG > NC_002947/1851618‑1851905
|
aGTACAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCt > 2:139852/1‑150 (MQ=255)
tACAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTgg > 1:347672/1‑150 (MQ=255)
gATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGAt < 1:211800/150‑1 (MQ=255)
aTCGCCAAGCTGTTGCATGAGCGGCGGCTGGACAGCGAGCGCTTCCTCTGCGTCGTGATGAACCAGCGGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATg < 2:347672/150‑1 (MQ=255)
ccAAGCTGTTGCATGAGCGGCGGCTGGACCGCGGGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAgc > 2:60135/1‑150 (MQ=255)
cTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCaaa > 1:559628/1‑150 (MQ=255)
gCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCt > 2:1141156/1‑150 (MQ=255)
cATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTg > 1:1161325/1‑150 (MQ=255)
tGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATGTGGCGCAAGATGCAGCGCAAAGGCCTGGa < 2:598978/150‑1 (MQ=255)
cgcgAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTac < 2:804305/150‑1 (MQ=255)
gAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTacgac > 2:1210128/1‑150 (MQ=255)
gAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTacgac < 1:1141156/150‑1 (MQ=255)
aGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTacgac‑g < 1:60135/150‑1 (MQ=255)
gcgcTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGa < 2:363821/129‑1 (MQ=255)
gcgcTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGa > 1:363821/1‑129 (MQ=255)
ttCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCCCTGTCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCt < 1:1055275/139‑1 (MQ=255)
ttCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTg < 2:864051/123‑1 (MQ=255)
ttCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTg > 1:864051/1‑123 (MQ=255)
ttCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCt > 2:1055275/1‑139 (MQ=255)
catcaGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑gtgcgtgc > 1:796027/1‑150 (MQ=255)
atccGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑Gtgcgtgcg > 2:1044147/1‑150 (MQ=255)
gCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAACGGCCTGGAGTTCAGCCAGATCTACGAC‑CTGCgtgcggtgc > 2:1584487/1‑150 (MQ=255)
gatgaACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGgcgc < 1:1475277/88‑1 (MQ=255)
gatgaACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGgcgc > 2:1475277/1‑88 (MQ=255)
atgaACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTg < 2:1437248/150‑1 (MQ=255)
atgaACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGACAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTg < 2:1021556/150‑1 (MQ=255)
tgaACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTgg > 2:518241/1‑150 (MQ=255)
ccAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGa < 1:541273/105‑1 (MQ=255)
ccAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGa > 2:541273/1‑105 (MQ=255)
ccAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTac < 1:354/121‑1 (MQ=255)
ccAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTac > 2:354/1‑121 (MQ=255)
cAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCg > 1:1116856/1‑150 (MQ=255)
cAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATc < 1:1210128/150‑1 (MQ=255)
aGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATcc > 1:905007/1‑150 (MQ=255)
gAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTCTTGGCTCTGGACCAAGCAGCAGCGCAAAGGCCTGGCGTTGAAGTCGTTGCAAAACAGGGCGTG‑GGTGCGCGTGCTGGTGCCGAAAATccc > 1:354965/1‑149 (MQ=255)
aaCGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCcgc > 2:253785/1‑150 (MQ=255)
aaCGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCcgc > 2:1496386/1‑150 (MQ=255)
tCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAc‑gtgc < 2:948658/108‑1 (MQ=255)
tCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAc‑gtgc > 1:948658/1‑108 (MQ=255)
cGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTacac < 2:252717/150‑1 (MQ=255)
ggCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTg < 2:559628/150‑1 (MQ=255)
gCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTgg < 1:637496/150‑1 (MQ=255)
gTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTCAGGTGCTCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGc < 1:1231227/150‑1 (MQ=255)
ggCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTa < 2:183623/84‑1 (MQ=255)
ggCCGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTa > 1:183623/1‑84 (MQ=255)
ccGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGc > 2:286779/1‑150 (MQ=255)
cGACATCAGCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGca < 1:518241/150‑1 (MQ=255)
gCGGCCGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTtgt < 2:1116856/150‑1 (MQ=255)
cGGGCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTTGTggcgg < 2:1161325/150‑1 (MQ=255)
gggCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGa > 1:334651/1‑109 (MQ=255)
gggCGAAACATATCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGa < 2:334651/109‑1 (MQ=255)
atatCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGca < 2:717083/127‑1 (MQ=255)
atatCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGca > 1:717083/1‑127 (MQ=255)
atatCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTTGTGGCGGCATATTCCCa > 1:1517908/1‑150 (MQ=255)
tatCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTTGTGGCGGCATATTCCCaa < 1:286779/150‑1 (MQ=255)
tatCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTTGTGGCGGCATATTCCCaa < 2:56972/150‑1 (MQ=255)
tatCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTTGTGGCGGCATATTCCCaa < 1:1496386/150‑1 (MQ=255)
tCTATTGGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTTGTGGCGGCATATTCCCAAgg > 2:754650/1‑150 (MQ=255)
tATTGGATCTGGCGCAAGATGCGGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCgtgcggt > 1:257971/1‑68 (MQ=255)
tATTGGATCTGGCGCAAGATGCGGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCgtgcggt < 2:257971/68‑1 (MQ=255)
|
AGTACAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTCGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAC‑GTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTTGTGGCGGCATATTCCCAAGG > NC_002947/1851618‑1851905
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A