Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F54 I1 R1 8 73.7 3695248 93.5% 3455056 132.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_002947 1,648,886 Δ12 bp intergenic (‑123/+162) oprB‑II ← / ← PP_1446 carbohydrate‑selective porin/TonB‑dependent receptor

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947 1648886 1648897 12 90 [0] [0] 90 oprB‑II/PP_1446 carbohydrate‑selective porin/TonB‑dependent receptor

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 16488850 (0.000)85 (1.200) 59/254 0.2 100% intergenic (‑122/+174) oprB‑II/PP_1446 carbohydrate‑selective porin/TonB‑dependent receptor
?NC_002947 1648898 = 0 (0.000)intergenic (‑135/+161) oprB‑II/PP_1446 carbohydrate‑selective porin/TonB‑dependent receptor

GATK/CNVnator alignment

N/A