Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F43 I0 R1 32 68.2 1528488 95.6% 1461234 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 2,010,363 C→T 100% C146Y (TGT→TAT)  USA300HOU_RS10125 ← Putative multidrug export ATP‑binding/permease protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE2,010,3630CT100.0% 202.7 / ‑6.5 64C146Y (TGT→TAT) USA300HOU_RS10125Putative multidrug export ATP‑binding/permease protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base T (24/39);  minor base A (1/0);  total (25/39)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

CACGTGTCAATTTTCTTAATCTTCCAAAGAAAACGTACACCGTTAAAATGTAAAATGGGAAGATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATACAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTATTAGCATAAAATCTCGCACTTAAAGCTTGTAAATGGTTGTA  >  USA300TCH1516_ALE/2010229‑2010499
                                                                                                                                      |                                                                                                                                        
cACGTGTCAATTTTCTTAATCTTCCAAAGAAAACGTACACCGTTAAACTGTAAAATGGGAAGATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAAAACATTATGGATACTGCAATAATAATCGTTATATAATCt                                                                                                                                     >  2:558846/1‑140 (MQ=255)
cACGTGTCAATTTTCTTAATCTTCCAAAGAAAACGTACACCGTTAAAATGTAAAATGGGAAGATAAACAGTGCTGCTAAAGTCAATTTCACATATAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCt                                                                                                                                     >  2:560255/1‑140 (MQ=255)
  cGTGACAATTTTCTTAAGCTCCCAAAGAAGACGTACACGGTTAAGACGTAAAAGGGGAAGATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTaa                                                                                                                                   <  2:253932/140‑1 (MQ=255)
      tCAATTTTCTTAATCTTCCAAAGAAAACGTACACCGTTAAAATGTAAAATGGGAAGATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCaa                                                                                                                               <  1:133155/140‑1 (MQ=255)
      tCAATTCTCTTAATCTTCCAAAGAAAACGTACACCGTTAAAATGTAAAATGGGAAGATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCaa                                                                                                                               >  2:643497/1‑140 (MQ=255)
         aTTTTCTTAATCTTCCAAAGAAAACGTACACCGTTAAAATGTAAAATGGGAAGATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATAGTTATATAATCTACCCaaaaa                                                                                                                            >  2:440006/1‑138 (MQ=255)
          ttttCTTAATCTTCCAAAGAAAACGTACACCGTTAAAATGTAAAATGGGAAAATAAACAGTGCTACTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATAGTTATATAATCTAACCAAatat                                                                                                                           >  2:834/1‑140 (MQ=255)
              cTTAATCTTCCAAAGAAAACGTACACCGTTAAAATGTAAAATGGGAAGATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCAt                                                                                                                       <  1:408066/140‑1 (MQ=255)
              cTTAATCTTCCAAAGAAAACGTACACCGTTAAAATGTAAAATGGGAAGATAAACAGTGCTGCGCAAGTCAAGTTCACATCTAAAAAGAAAATTATGGATAGTGCAATAATAATTGATAAAAAATCTAACCACAAAttaaa                                                                                                                       >  2:64636/1‑137 (MQ=255)
                       caaaaGAAAACGTACACCATTAAAATGTAAAATGGGAAGATAAACAGTGTTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGt                                                                                                              <  2:299586/138‑1 (MQ=255)
                         aaaGAAAACGTACACCGTTAAAATGTAAAATGGGAAGATAAGTGGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTa                                                                                                            <  2:85457/140‑1 (MQ=255)
                         aaaGAAAACGTACACCGTTAAAATGTAAAATGAGAAGATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTa                                                                                                            <  2:672081/140‑1 (MQ=255)
                             aaaaCGTACACCGTGAAAATGTAAAATGGGAAGATAAACAGTGCTCCTATTTTCAAGTTCACAACTAAATAGAACATTATGGATAGTGCAATAATAATTTTTATATTATCTAACCATATATTCATTAACCCGGTTAAAAt                                                                                                        <  1:105058/140‑1 (MQ=255)
                              aaaCGTACACCGTTAAAATGTAAAATGGGACGATAAACAGTGCTGCTAAAGTCAATTTCACCTCTAAAACGAACATTATGGCTAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATg                                                                                                       >  1:310888/1‑140 (MQ=255)
                                  gTACACCGTTAAAATGTAAAATGGGAAGATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAAt                                                                                                   >  1:665660/1‑140 (MQ=255)
                                    acacCGTTAAAATGTAAAATGGGAAGATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCt                                                                                                 <  1:200276/140‑1 (MQ=255)
                                     cgccGTAAAAATGTAAAATGGAAAAATAAACATTGCTGCTAAAGTCAATTTCAAATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAATTATTCATTAACCCGGTTAAAATGAAATCtt                                                                                                <  2:512902/138‑1 (MQ=255)
                                     cacCGTTAAAATGTAAAATGGGAAGATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATCTAATCTAACAAAATATTCATTAACCCAGTTAAAATGAAATCtt                                                                                                >  2:684264/1‑140 (MQ=255)
                                      gccGGTACAATGTAAAATAGGAAGATAAACTGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAATTATTCATTAACCCGGTTAAAATGAAATCttt                                                                                               <  2:215184/139‑1 (MQ=255)
                                      actgTTAAGATGTAAAATGGGAAGATAAACAGTGCTGCTAAAGTCAGTTTCACATCTAGAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCttt                                                                                               <  2:252854/137‑1 (MQ=255)
                                        cGTTCAAATGCAATATGGGAAGATAAACCGTCCTGCTAAAGTCAATGCCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTtttg                                                                                             <  1:40103/140‑1 (MQ=255)
                                         gTTAATATGTAAAATCAGACGATAAACAGTGCTGATAAAGTCAATTTTACATCTATCTACAACTCTCTTGATAGTGCAATAAGAATTGTTATATAATCTAACTCAATATTCATCAACCCCTTTAAAATGAAATCTtttgt                                                                                            <  2:579353/140‑1 (MQ=255)
                                              aatgtaaaatgGGAAGATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTtgtttgtt                                                                                       <  1:411486/140‑1 (MQ=255)
                                                   aaaatgGGAAGATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAATAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAAACCGGTTGATGAAGCATCTTTGGTTTGTTCAAca                                                                                  <  2:237958/140‑1 (MQ=255)
                                                     aatgGGAAGATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAAcatc                                                                                <  1:90977/140‑1 (MQ=255)
                                                        gggAAGATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCAtt                                                                             <  1:415965/140‑1 (MQ=255)
                                                          gAAGATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCAttta                                                                           >  2:661847/1‑138 (MQ=255)
                                                          gAAGATAAACAGTGCTGATAAAGTCAATTTCACATATAAAAAAAACATTATGGATAGTGCAATAATAATTGTTATATAATATAACCAAATATTCGTTAACCCGGTTAAAATGAAATCTATTGTATGTTAAACATCATTaa                                                                           >  2:726088/1‑140 (MQ=255)
                                                           aaGATAAACAGGGCGGCTAAAGTAAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAAt                                                                          <  2:653795/140‑1 (MQ=255)
                                                            aGATAAACAGTGCTTCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATc                                                                         <  2:725352/140‑1 (MQ=255)
                                                             gATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCa                                                                        >  1:141411/1‑140 (MQ=255)
                                                             gATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCa                                                                        <  2:489535/140‑1 (MQ=255)
                                                              aTAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCAc                                                                       <  1:762112/140‑1 (MQ=255)
                                                                   cAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAg                                                                  >  1:577770/1‑140 (MQ=255)
                                                                               aGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGAc                                                      <  2:487578/140‑1 (MQ=255)
                                                                                gTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGAcc                                                     <  1:398135/140‑1 (MQ=255)
                                                                                 tCAACTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCt                                                    <  1:1666/140‑1 (MQ=255)
                                                                                  cAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTa                                                   <  1:194790/140‑1 (MQ=255)
                                                                                    aTTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACt                                                 <  2:259498/140‑1 (MQ=255)
                                                                                    aTTTCACATCGAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTATTTTACCTACt                                                 <  2:466995/140‑1 (MQ=255)
                                                                                     tttCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACtt                                                <  1:326571/140‑1 (MQ=255)
                                                                                           aTCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGattat                                          <  1:569292/140‑1 (MQ=255)
                                                                                           aTCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATATAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGattat                                          <  2:7135/140‑1 (MQ=255)
                                                                                            tCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGattatt                                         >  2:257144/1‑140 (MQ=255)
                                                                                            tCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGattatt                                         >  2:226188/1‑140 (MQ=255)
                                                                                             cTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACACTAGATATTACTTGACCTACTttattatta                                        >  2:122036/1‑140 (MQ=255)
                                                                                             cTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCAATCTAGATATTACTTGATCTACTTGAttatta                                        >  2:240864/1‑140 (MQ=255)
                                                                                                aaaaGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTATTAGCa                                     <  1:700166/140‑1 (MQ=255)
                                                                                                 aaaGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTATTAGCAt                                    >  1:73390/1‑140 (MQ=255)
                                                                                                   aGAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTATTAGCATaa                                  <  1:575371/140‑1 (MQ=255)
                                                                                                    gAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTATTAGCATaaa                                 >  2:611775/1‑140 (MQ=255)
                                                                                                    gAACATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTATTAGCATaaa                                 >  1:618819/1‑140 (MQ=255)
                                                                                                       cATTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTATTAGCATAAAAtc                              >  1:225569/1‑140 (MQ=255)
                                                                                                        aTTATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTATTAGCATAAAAtct                             >  1:609652/1‑140 (MQ=255)
                                                                                                          tATGGATAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTATTAGCATAAAATCTCg                           <  1:37283/140‑1 (MQ=255)
                                                                                                                tAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTATTAGCATAAAATCTCGCACTTa                     <  2:508850/140‑1 (MQ=255)
                                                                                                                tAGTGCAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTATTAGAAGCTAATCTCGCACtca                     >  2:298279/1‑138 (MQ=255)
                                                                                                                     cAATAGTAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTATTAGCATAAAATCTCGCACTTAAAGCt                <  1:314458/140‑1 (MQ=255)
                                                                                                                     cAATAATAATTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTATTAGCATAAAATCTCGCACTTAAAGCt                <  1:684264/140‑1 (MQ=255)
                                                                                                                      aataataatTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTATTAGCATAAAATCTCGCACTTAAAGCtt               >  1:623252/1‑140 (MQ=255)
                                                                                                                       ataataatTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTACTAGCATAAAATCTCGCACTTAAAGCTTg              <  2:757793/140‑1 (MQ=255)
                                                                                                                           taatTGTTATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTATTAGCATAAAATCTCGCACTTAAAGCTTGTaaa          >  2:31949/1‑140 (MQ=255)
                                                                                                                                 ttATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTATTAGCATAAAATCTCGCACTTAAAGCTTGTAAATGGTTg    <  1:560255/140‑1 (MQ=255)
                                                                                                                                 ttATATAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATAACTCCAGATATTACTTGACCTACTTAATTATTAGCATAAAATCTCGCACTTAAAGCTTGTAAATGGTTg    <  1:558846/140‑1 (MQ=255)
                                                                                                                                   atatAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTATTAGCATAAAATCTCGCACTTAAAGCTTGTAAATGGTTGta  <  1:653057/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                        
CACGTGTCAATTTTCTTAATCTTCCAAAGAAAACGTACACCGTTAAAATGTAAAATGGGAAGATAAACAGTGCTGCTAAAGTCAATTTCACATCTAAAAAGAACATTATGGATAGTGCAATAATAATTGTTATACAATCTAACCAAATATTCATTAACCCGGTTAAAATGAAATCTTTTGTTTGTTCAACATCATTAATCACTCTAGATATTACTTGACCTACTTGATTATTAGCATAAAATCTCGCACTTAAAGCTTGTAAATGGTTGTA  >  USA300TCH1516_ALE/2010229‑2010499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A