Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F56 I0 R1 19 43.9 998620 94.5% 943695 140.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 2,532,298 A→T 100% T15T (ACA→ACT)  femA_3 → Aminoacyltransferase FemA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE2,532,2980AT100.0% 188.9 / NA 63T15T (ACA→ACT) femA_3Aminoacyltransferase FemA
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (25/38);  total (25/38)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GTGTATTTGTAATCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACAACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGAAGC  >  USA300TCH1516_ALE/2532162‑2532432
                                                                                                                                        |                                                                                                                                      
gtgtATTTGTAATCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTActacaa                                                                                                                                    >  1:303195/1‑141 (MQ=255)
            tCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTcac                                                                                                                        >  2:3415/1‑141 (MQ=255)
             cAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTcaca                                                                                                                       >  2:203049/1‑141 (MQ=255)
              aGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTACAATTCAGAGAGAGATAAGATAAAATGAACTTTGTAACGTTGACTACGCCTATTTTAAATGCATTTACTGCAAAGCATTTTTCACAt                                                                                                                      >  2:350718/1‑141 (MQ=255)
                   ttGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACCTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTacac                                                                                                                 <  1:350403/141‑1 (MQ=255)
                    tGATAAAATAAAAAAATAGGATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTacaca                                                                                                                <  2:474454/141‑1 (MQ=255)
                    tGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTAAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTAGTACAAAGAATTGTTCACATTacaca                                                                                                                >  1:300714/1‑141 (MQ=255)
                    tGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATACAGAGAGCCCTGAGATAAAATCACTTACACGGCGCAGTCGTCGGATGAGTTAAATGCGTTTACTACAAAGCATTTTTCACATTaccca                                                                                                                >  2:354814/1‑141 (MQ=255)
                         aaataaaaAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAGCGTTGACTTCGGATGAGTTCAATGCGTTTACTACATAGCATTTTTCACATTACACACAATc                                                                                                           <  2:366933/141‑1 (MQ=255)
                         aaataaaaAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTAACATTACACACAATc                                                                                                           >  2:232072/1‑141 (MQ=255)
                           ataaaaAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATAGTATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCac                                                                                                         >  2:51634/1‑140 (MQ=255)
                            aaaaaaaaTAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGc                                                                                                        <  2:250589/140‑1 (MQ=255)
                            aaaaaaaaGAGCATGATTAAGAAATTCAAGAATTATAGTTAAATTCAGATAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCTGATGAGTTCAATTCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGc                                                                                                        <  2:70192/140‑1 (MQ=255)
                                 aaaTAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTc                                                                                                   >  1:280327/1‑141 (MQ=255)
                                 aaaTAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAAATTTGTAACGTTGCCTTCGGATGAGTTCAATGCGTTTCCTACACAGCATTTTTCACATTACACACAATCAGCTATTc                                                                                                   <  2:73378/141‑1 (MQ=255)
                                    tAGCATTATTAATAAATTCAAAAATTATAGTTCAATTTAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATCACCCACAATATGCTATTCAtt                                                                                                <  2:436804/141‑1 (MQ=255)
                                     gacagtattaGTAAATTCAAAAAGTATAGTTAGATTCAGAGAGGTATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTa                                                                                               <  2:184297/136‑1 (MQ=255)
                                     aGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTATAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTa                                                                                               >  1:396656/1‑141 (MQ=255)
                                       cATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCAATACa                                                                                             >  2:166327/1‑141 (MQ=255)
                                          tattaATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATc                                                                                          >  2:308383/1‑141 (MQ=255)
                                           attaATAAATTAAAAAATTATAGTTCAATGCAGAGAGGGATGGGATAAAATGAACTCTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCa                                                                                         <  2:362310/141‑1 (MQ=255)
                                               ataaATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATaga                                                                                     >  1:284136/1‑141 (MQ=255)
                                               ataaATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATaga                                                                                     >  1:417601/1‑141 (MQ=255)
                                                  aaTTCAAAAATTATAGTTGAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGtt                                                                                  <  2:189753/141‑1 (MQ=255)
                                                  aaTTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGtt                                                                                  <  2:198741/141‑1 (MQ=255)
                                                         aaaTTATAGTTCAATTGAGCGCGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTaa                                                                           <  2:371964/141‑1 (MQ=255)
                                                         aaaTTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACGCATTCAGTTGGTCAGTACAATCATAGAGTTGATTTaa                                                                           <  1:216969/141‑1 (MQ=255)
                                                          aaTTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTaaa                                                                          >  1:678/1‑141 (MQ=255)
                                                            ttATAGTTCAATTCAGAGAGGGCTGAGATCAAAGAAACTTGGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAg                                                                        >  1:473984/1‑141 (MQ=255)
                                                               taGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCg                                                                     <  2:42642/141‑1 (MQ=255)
                                                               taGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCg                                                                     <  1:167630/141‑1 (MQ=255)
                                                               aaGTTCAAGTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCg                                                                     <  2:324918/140‑1 (MQ=255)
                                                                   tCAATGCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGAtgt                                                                 <  2:263905/141‑1 (MQ=255)
                                                                       ttCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCAt                                                             <  1:77997/141‑1 (MQ=255)
                                                                       ttCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCAt                                                             <  1:170228/141‑1 (MQ=255)
                                                                       ttCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCAt                                                             <  1:246835/141‑1 (MQ=255)
                                                                        tgagagagGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGTGTTCAATGTGTTTACTACAATGCATTGTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATc                                                            <  2:82426/139‑1 (MQ=255)
                                                                           gagagGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAACGGCGATGTGCATCTTg                                                         >  1:485879/1‑141 (MQ=255)
                                                                              agGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAg                                                      <  1:249403/141‑1 (MQ=255)
                                                                                  atgggatAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGt                                                  <  1:203049/141‑1 (MQ=255)
                                                                                      gatAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGCTGATTTAAAAGGCGATGTGCATCTTGTCGAGGTTaac                                              >  2:268225/1‑140 (MQ=255)
                                                                                         aaaaTGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGAt                                           <  1:178982/141‑1 (MQ=255)
                                                                                          aaaTGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGCGGTTAAAGATg                                          >  2:476950/1‑141 (MQ=255)
                                                                                          aaaTGAACTTTGTAACGTAGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATg                                          <  2:309435/141‑1 (MQ=255)
                                                                                                aCTGTGTGACGTTGACTTCGGATGAGTTCAATGCGTTTACTACATAGCATTTTTCACATTACACACAATCAGCTGTTCATTCCATTCTTAGATTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATg                                    <  2:330344/141‑1 (MQ=255)
                                                                                                 cTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATgg                                   <  1:325484/141‑1 (MQ=255)
                                                                                                    tGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTGTTAACATAATACTGGTCCTGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCa                                <  1:493725/141‑1 (MQ=255)
                                                                                                       aaCGTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGt                             <  1:3415/141‑1 (MQ=255)
                                                                                                          gTTGACTTCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAAGGGTCAAGTGAt                          >  2:214064/1‑141 (MQ=255)
                                                                                                            tggtttCGGATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTg                        <  2:322669/137‑1 (MQ=255)
                                                                                                             ggcTTGGGATTAATTCAAGAGGTTTACTACAAAGTATTTGTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGAGTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGc                       <  2:430987/139‑1 (MQ=255)
                                                                                                              aCTTCGGATGAGTTCAATGCGTTTACTACAAAGCCTTATTCAGATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCa                      <  1:257309/141‑1 (MQ=255)
                                                                                                                ttCGGATGAGTTCAATGCGTTTAGTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTgacgg                    >  1:148103/1‑137 (MQ=255)
                                                                                                                   ggATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATg                 >  1:477668/1‑141 (MQ=255)
                                                                                                                    gATGAGTTCAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGc                <  2:464955/141‑1 (MQ=255)
                                                                                                                    aaTGTGTTCAATTCGTTTATTAAAAAGTATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGc                <  2:422932/140‑1 (MQ=255)
                                                                                                                            cAATGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGAAGCTAAAAACCCCAATGGTTAATTTATTGCAGGATGCTTATTGAc        <  1:344034/141‑1 (MQ=255)
                                                                                                                             aaTGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACa       >  1:55194/1‑141 (MQ=255)
                                                                                                                              aTGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAg      <  1:266839/141‑1 (MQ=255)
                                                                                                                              aTGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAg      >  2:176675/1‑141 (MQ=255)
                                                                                                                               tGCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTAGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGa     >  2:24492/1‑141 (MQ=255)
                                                                                                                                gCGTTTACTACAAAGCATTTTTCACATTACACACAATCAGCAATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGaa    <  2:352202/141‑1 (MQ=255)
                                                                                                                                 cGTTCACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGAAg   <  2:396656/141‑1 (MQ=255)
                                                                                                                                  gTTTACTACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGCGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGAAgc  >  1:28407/1‑141 (MQ=255)
                                                                                                                                        |                                                                                                                                      
GTGTATTTGTAATCAGTTTTTGATAAAATAAAAAAATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACAACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAAAGATGACAATGGTCAAGTGATTGCAGGATGCTTATTGACAGAAGC  >  USA300TCH1516_ALE/2532162‑2532432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A