Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F2 I1 R1
|
15 |
39.5 |
1304580 |
98.1% |
1279792 |
140.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,722,270 |
T→A |
I773N (ATC→AAC) |
pka → |
protein lysine acetyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,722,270 | 0 | T | A | 98.2%
| 184.1
/ NA
| 54 | I773N (ATC→AAC) | pka | protein lysine acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base A (26/27); minor base C (1/0); total (27/27) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGCTGCTTGTTCCGCCCGATTTTGCCAGAAGATGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGATCGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTGCTGTACTGGTTCGCTCGGATCTCAAAGGGT > NC_000913/2722125‑2722413
|
cGCTGCTTGTTCCGCCCGATTTTGCCAGAAGATGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGa < 7:113661/149‑1 (MQ=255)
cGCTGCTTGTTCCGCCCGATTTTGCCAGAAGATGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGa < 3:45405/149‑1 (MQ=255)
gctgctTGTTCCGCCCGATTTTGCCAGAAGATGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGAc < 8:122183/149‑1 (MQ=255)
gctTGTTCCGCCCGATTTTGCCAGAAGATGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTAc > 8:54113/1‑149 (MQ=255)
ctTGTTCCGCCCGATTTTGCCAGAAGATGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTAc < 5:117109/148‑1 (MQ=255)
ttGCCAGAAGATGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGt < 1:11872/148‑1 (MQ=255)
ttGCCAGAAGATGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGAGCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGt < 4:34858/148‑1 (MQ=255)
cAGAAGATGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTg > 2:17085/1‑147 (MQ=255)
gaagaTGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGc < 7:73693/149‑1 (MQ=255)
aagaTGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTAATACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCg < 1:63466/149‑1 (MQ=255)
agaTGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCgg < 3:63282/149‑1 (MQ=255)
gCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTacgac > 6:167363/1‑149 (MQ=255)
acaACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTa < 2:91763/149‑1 (MQ=255)
acaACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTa > 1:90796/1‑149 (MQ=255)
ttCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAg > 4:4873/1‑132 (MQ=255)
ttCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAg < 3:4873/132‑1 (MQ=255)
ttCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGAt > 7:92919/1‑149 (MQ=255)
ttCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGAt > 6:131014/1‑149 (MQ=255)
cAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTAt > 1:76438/1‑140 (MQ=255)
cAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTAt < 2:76438/140‑1 (MQ=255)
cAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAAc > 6:13072/1‑149 (MQ=255)
cAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAAc < 5:131014/149‑1 (MQ=255)
cAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAAc > 7:116658/1‑149 (MQ=255)
cAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAAc < 7:26514/149‑1 (MQ=255)
aTTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACg > 3:61050/1‑148 (MQ=255)
tCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAgaga < 4:120975/148‑1 (MQ=255)
gAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTc > 3:110768/1‑149 (MQ=255)
aCCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGt > 6:112321/1‑149 (MQ=255)
aCCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTCGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGt > 7:5414/1‑149 (MQ=255)
aCCAAAGAAGATATTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGCGAAATCGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGt > 7:122858/1‑149 (MQ=255)
cAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCa > 7:53721/1‑149 (MQ=255)
aaaGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCAc < 4:110768/149‑1 (MQ=255)
aagaagATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACCCAGACCGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCAcg > 6:42809/1‑149 (MQ=255)
agaTCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTg < 5:13072/149‑1 (MQ=255)
tCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCg < 5:102056/137‑1 (MQ=255)
tCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCg > 6:102056/1‑137 (MQ=255)
attaCCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTcc > 8:123386/1‑149 (MQ=255)
cGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGACAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTAGTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATcc > 8:124948/1‑149 (MQ=255)
cTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGa < 8:116658/147‑1 (MQ=255)
cTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGAt > 2:147588/1‑148 (MQ=255)
gaTCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATg > 4:17316/1‑149 (MQ=255)
aTTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTg < 8:92919/149‑1 (MQ=255)
aTTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTg < 1:147588/149‑1 (MQ=255)
aCCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTGCTg < 5:112321/148‑1 (MQ=255)
aTGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAAt < 3:114273/138‑1 (MQ=255)
aTGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTGCTGTACTg > 6:100885/1‑149 (MQ=255)
aTGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATAGATGCCGAAt > 4:114273/1‑138 (MQ=255)
tGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTGCTGTACTGGTTCGCTCGGATCTCaaa < 5:100885/149‑1 (MQ=255)
tGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTGCTGTACTGGTTCGCTCGGATCTCaaa < 4:61050/149‑1 (MQ=255)
tGACACAGAACGACTACGATCGGGAAATGGCGTTCGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTGCTGTACTGGTTCGCTCGGATCTCaaa < 8:5414/149‑1 (MQ=255)
acacAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTGCTGTACTGGTTCGCTCGGATCTCAAAgg > 6:26505/1‑149 (MQ=255)
cacaGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTGCTGTACTGGTTCGCTCGGATCTCAAAggg < 7:54113/149‑1 (MQ=255)
acaGAACGACTACGATC‑GGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTGCTGTACTGGTTCGCTCGGATCTCAAAGGGt > 2:27125/1‑148 (MQ=255)
aGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTGCTGTACTGGTTCGCTCGGATCTCAAAGGGt > 2:4973/1‑147 (MQ=255)
|
CGCTGCTTGTTCCGCCCGATTTTGCCAGAAGATGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGATCGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTGCTGTACTGGTTCGCTCGGATCTCAAAGGGT > NC_000913/2722125‑2722413
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACGCTGCTTGTTCCGCCCGATTTTGCCAGAAGATGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGATCGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTGCTGTACTGGTTCGCTCGGATCTCAAAGGGT > NC_000913/2722124‑2722413
|
ACGCTGCTTGTTCCGCCCGATTTTGCCAGAAGATGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGAC < NB501016:228:HFK2FAFXY:2:11211:9236:7598/151‑1 (MQ=60)
ACGCTGCTTGTTCCGCCCGATTTTGCCAGAAGATGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGAC < NB501016:228:HFK2FAFXY:4:21507:13862:14432/151‑1 (MQ=60)
GCTTGTTCCGCCCGATTTTGCCAGAAGATGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACG < NB501016:228:HFK2FAFXY:3:21502:8666:17216/150‑1 (MQ=60)
TTTGCCAGAAGATGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTT < NB501016:228:HFK2FAFXY:1:11105:19409:8467/150‑1 (MQ=60)
AGAAGACGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCG < NB501016:228:HFK2FAFXY:4:11612:4202:15273/151‑1 (MQ=60)
GAAGATGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTAATACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGG < NB501016:228:HFK2FAFXY:1:11301:10337:1911/151‑1 (MQ=60)
AAGATGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGT < NB501016:228:HFK2FAFXY:2:11307:1717:7563/151‑1 (MQ=60)
CACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTAT > NB501016:228:HFK2FAFXY:1:11311:21474:14944/1‑151 (MQ=60)
CTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATC > NB501016:228:HFK2FAFXY:4:21409:11950:13561/1‑151 (MQ=60)
CTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGC < NB501016:228:HFK2FAFXY:2:11103:13476:8600/134‑1 (MQ=60)
GCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACG < NB501016:228:HFK2FAFXY:3:21509:24753:3460/151‑1 (MQ=60)
GCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACG > NB501016:228:HFK2FAFXY:4:21509:19207:6934/1‑151 (MQ=60)
GCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACG < NB501016:228:HFK2FAFXY:4:11412:13355:15921/151‑1 (MQ=60)
GCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATT > NB501016:228:HFK2FAFXY:1:11306:9805:3250/1‑142 (MQ=60)
AATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGG > NB501016:228:HFK2FAFXY:2:11306:12295:8281/1‑150 (MQ=60)
CGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCG > NB501016:228:HFK2FAFXY:2:21206:24849:8211/1‑151 (MQ=60)
CACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTCGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTC > NB501016:228:HFK2FAFXY:4:11403:16406:12181/1‑151 (MQ=60)
CACCAAAGAAGATATTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGCGAAATCGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTC > NB501016:228:HFK2FAFXY:4:21512:9218:11367/1‑151 (MQ=60)
CCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCAC > NB501016:228:HFK2FAFXY:4:11602:20273:11110/1‑151 (MQ=60)
AAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGC < NB501016:228:HFK2FAFXY:3:11406:3810:16165/151‑1 (MQ=60)
ATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGT < NB501016:228:HFK2FAFXY:3:21408:15997:4224/139‑1 (MQ=60)
AATTTACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTGC < NB501016:228:HFK2FAFXY:1:21209:11844:16479/151‑1 (MQ=60)
TACCCATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTGCTGT < NB501016:228:HFK2FAFXY:3:21412:11015:14889/150‑1 (MQ=60)
CATGAAGATTTAGCCAACATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATT < NB501016:228:HFK2FAFXY:2:21208:17816:2589/140‑1 (MQ=60)
ATGACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTGCTGTACTGGTTCGCTCGGATCTCAAAG < NB501016:228:HFK2FAFXY:3:21407:6117:12997/151‑1 (MQ=60)
ACACAGAACGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTGCTGTACTGGTTCGCTCGGATCTCAAAGGGC < NB501016:228:HFK2FAFXY:4:11602:17755:14649/151‑1 (MQ=60)
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ACGCTGCTTGTTCCGCCCGATTTTGCCAGAAGATGAGCCACAACTTCAGCAATTCATTTCGCGAGTCACCAAAGAAGATCTTTATTACCGCTACTTTAGCGAGATCAACGAATTTACCCATGAAGATTTAGCCAACATGACACAGATCGACTACGATCGGGAAATGGCGTTTGTAGCGGTACGACGTATTGATCAAACGGAAGAGATCCTCGGCGTCACGCGTGCGATTTCCGATCCTGATAACATCGATGCCGAATTTGCTGTACTGGTTCGCTCGGATCTCAAAGGGT > NC_000913/2722124‑2722413
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
