Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,713,565 |
G→A |
H117Y (CAT→TAT) |
pdxY ← |
pyridoxal kinase 2 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,713,565 | 0 | G | A | 100.0%
| 472.9
/ NA
| 134 | H117Y (CAT→TAT) | pdxY | pyridoxal kinase 2 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (55/79); total (55/79) |
Only 100 of 137 total aligned reads displayed.
GATTTGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATGACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTCC > NC_000913/1713475‑1713653
|
gATTTGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAAc > 1:957804/1‑93 (MQ=255)
aTTTGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATCAcc > 2:3304269/1‑93 (MQ=255)
aTTTGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAAcc > 2:4376403/1‑93 (MQ=255)
aTTTGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAAcc < 1:1881481/93‑1 (MQ=255)
aTTTGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAAcc < 1:3876956/93‑1 (MQ=255)
tttGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAAccc > 2:4485036/1‑93 (MQ=255)
tGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCAt < 2:3606009/93‑1 (MQ=255)
tGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCAt < 1:379291/93‑1 (MQ=255)
ggCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGCCACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCAtt < 1:549723/93‑1 (MQ=255)
ggCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCAtt < 1:1869584/93‑1 (MQ=255)
aaTGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCgg > 1:1486957/1‑93 (MQ=255)
aaTGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCgg < 2:3560778/93‑1 (MQ=255)
aaTGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCgg > 2:1942413/1‑93 (MQ=255)
aaTGATATCGCTGGCAGGCAAACCGTACCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCgg > 2:3091726/1‑93 (MQ=255)
aTGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGa > 1:2167849/1‑93 (MQ=255)
tGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGAt > 2:4707200/1‑93 (MQ=255)
tGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGAt > 2:115344/1‑93 (MQ=255)
gATGTCGCTGGCAGTCAACCCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATc < 2:1831604/93‑1 (MQ=255)
tatCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGc > 1:3343147/1‑93 (MQ=255)
tCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCaa > 2:2696138/1‑93 (MQ=255)
cTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCaaaaa < 2:1077925/93‑1 (MQ=255)
cTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCaaaaa > 1:1260184/1‑93 (MQ=255)
cTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCaaaaa < 2:1529083/93‑1 (MQ=255)
tGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAat > 1:4493281/1‑93 (MQ=255)
ggccggcaAACCGTGCCCCACATGAAACTCTGCGACCCCCGGTGCAACGATGCAGCCTTTTTCCGGATACCCCATTACCGGATCGCAAAAata < 2:1044521/93‑1 (MQ=255)
ggcaggcaAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAata < 1:3560128/93‑1 (MQ=255)
ggcaggcaAACCGTGCCGCACATGAAACTATGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAata < 1:3560129/93‑1 (MQ=255)
gcaggcaAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAatat > 1:3455830/1‑93 (MQ=255)
caggcaAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATAtt < 2:2964836/93‑1 (MQ=255)
caggcaAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATAtt < 1:2759671/93‑1 (MQ=255)
aggcaAGCAGTGCCGCACATGAATCTCTGCGACCACCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATAttt < 1:165449/93‑1 (MQ=255)
aggcaAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATAttt < 1:473665/93‑1 (MQ=255)
ggcaAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTc > 1:3938064/1‑93 (MQ=255)
ggcaAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTc > 1:3341155/1‑93 (MQ=255)
aaaCCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGcc > 1:4390271/1‑93 (MQ=255)
aaaCCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGcc < 2:3342442/93‑1 (MQ=255)
aaaCCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGcc < 2:4500126/93‑1 (MQ=255)
aCCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTg > 2:3708439/1‑93 (MQ=255)
aCCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTg > 2:1804497/1‑93 (MQ=255)
ccGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGc < 2:3528065/93‑1 (MQ=255)
ccGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGc > 1:2994613/1‑93 (MQ=255)
ccGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGc < 1:2861550/93‑1 (MQ=255)
cGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCg > 1:590577/1‑93 (MQ=255)
gTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCgg < 2:2002738/93‑1 (MQ=255)
tGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGa < 2:2208460/93‑1 (MQ=255)
ggCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGa < 1:896304/92‑1 (MQ=255)
gCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGAt < 1:79211/93‑1 (MQ=255)
ccGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGAtt < 1:1069181/93‑1 (MQ=255)
ccGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGAtt < 1:174539/93‑1 (MQ=255)
ccGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGAtt < 1:1011106/93‑1 (MQ=255)
cGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTc < 2:2680604/93‑1 (MQ=255)
gCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTcg > 1:2421418/1‑93 (MQ=255)
gCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTcg < 2:4429547/93‑1 (MQ=255)
cacaTGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTcgc < 1:2003868/93‑1 (MQ=255)
acaTGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTcgcg < 1:3233229/93‑1 (MQ=255)
tGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCt > 2:913102/1‑93 (MQ=255)
tGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCt > 2:774506/1‑93 (MQ=255)
aaCTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTc > 2:427561/1‑93 (MQ=255)
aCTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCa < 2:20459/93‑1 (MQ=255)
aCTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCa < 2:20460/93‑1 (MQ=255)
tctGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCAcc < 2:2675252/93‑1 (MQ=255)
tctGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCAcc < 2:2675253/93‑1 (MQ=255)
ctGCGACACCCGGTGCAACGATACGGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCt < 2:3995026/93‑1 (MQ=255)
ctGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCt < 2:699850/93‑1 (MQ=255)
ctGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCt < 2:3239497/93‑1 (MQ=255)
ctGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCt < 2:3239612/93‑1 (MQ=255)
gCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTga < 1:444537/93‑1 (MQ=255)
cGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTgac < 2:3436140/93‑1 (MQ=255)
cacCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTgacgga > 2:2867593/1‑93 (MQ=255)
cacCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTgacgga < 1:1824202/93‑1 (MQ=255)
acCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTgacggac < 1:1345958/93‑1 (MQ=255)
acCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGAGGCTTTCACCTgtcggac > 2:3814089/1‑93 (MQ=255)
ccGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGa < 2:1100177/93‑1 (MQ=255)
cGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGAt < 1:1393277/93‑1 (MQ=255)
gTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATAc < 1:4673614/93‑1 (MQ=255)
tGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATAcc < 2:811447/93‑1 (MQ=255)
gCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCg > 2:3699265/1‑93 (MQ=255)
gCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCg > 1:721108/1‑93 (MQ=255)
aaCGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAg < 2:1177430/93‑1 (MQ=255)
aaCGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAg > 2:2818636/1‑93 (MQ=255)
aaCGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAg > 2:1816998/1‑93 (MQ=255)
cGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGa < 2:971336/93‑1 (MQ=255)
gATACAGCCTTTTTCCGGATAACCCATTACCGGTTCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGat < 1:4578710/93‑1 (MQ=255)
aTACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGata < 1:4740586/93‑1 (MQ=255)
tACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGatat > 2:1486979/1‑93 (MQ=255)
aCAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATg > 1:924625/1‑93 (MQ=255)
aCAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATg < 1:1423856/93‑1 (MQ=255)
aCAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATg < 1:1942413/93‑1 (MQ=255)
cAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGt > 2:2455323/1‑93 (MQ=255)
cAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGt > 1:543273/1‑93 (MQ=255)
aGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGtt > 1:3458445/1‑93 (MQ=255)
gCCTTTTTCCGGTTACCCCTTTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTc < 2:4218359/93‑1 (MQ=255)
gCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTc > 1:3465571/1‑93 (MQ=255)
ccTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCa < 1:1941474/93‑1 (MQ=255)
ccTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCa > 2:2775755/1‑93 (MQ=255)
cTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCAc < 1:4120560/93‑1 (MQ=255)
tttttCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCAcc > 1:1092823/1‑93 (MQ=255)
cGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTc < 2:574830/93‑1 (MQ=255)
cGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTc < 1:125469/93‑1 (MQ=255)
ggATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTcc > 2:3940212/1‑93 (MQ=255)
|
GATTTGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATGACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTCC > NC_000913/1713475‑1713653
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCAGATTTGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATGACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTCCGCCGA > NC_000913/1713472‑1713658
|
CCAGATTTGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATA > SRR4302544.520880/1‑94 (MQ=60)
AGATTTGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAAC > SRR4302544.967216/1‑94 (MQ=60)
AGATTTGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAAC > SRR4302544.4126142/1‑94 (MQ=60)
ATTTGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCC < SRR4302544.3915451/94‑1 (MQ=60)
ATTTGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCC < SRR4302544.1899670/94‑1 (MQ=60)
TTGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCAT < SRR4302544.1770605/94‑1 (MQ=60)
TGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATT < SRR4302544.383153/94‑1 (MQ=60)
GGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGCCACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTA < SRR4302544.555112/94‑1 (MQ=60)
GGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTA < SRR4302544.1887652/94‑1 (MQ=60)
CGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACC > SRR4302544.1236253/1‑94 (MQ=60)
CAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGG > SRR4302544.1501656/1‑94 (MQ=60)
AATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGA > SRR4302544.2188418/1‑94 (MQ=60)
ATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGAT > SRR4302544.527128/1‑94 (MQ=60)
ATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGC > SRR4302544.3375025/1‑94 (MQ=60)
GCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAA > SRR4302544.1272580/1‑94 (MQ=60)
CTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAAT > SRR4302544.4538385/1‑94 (MQ=60)
GGCAGGCAAACCGTGCCGCACATGAAACTCTGCTACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATAT < SRR4302544.1003824/94‑1 (MQ=60)
GGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATAT < SRR4302544.3594260/94‑1 (MQ=60)
GGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATAT > SRR4302544.3488820/1‑94 (MQ=60)
GGCAGGCAAACCGTGCCGCACATGAAACTATGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATAT < SRR4302544.3594261/94‑1 (MQ=60)
CAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTT < SRR4302544.2786227/94‑1 (MQ=60)
CAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTCTTCCGGATAACCACTTACCGGATCGCAAAAATATTT < SRR4302544.857764/94‑1 (MQ=60)
AGGCAAGCAGTGCCGCACATGAATCTCTGCGACCACCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTC < SRR4302544.167072/94‑1 (MQ=60)
AGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTC > SRR4302544.3373008/1‑94 (MQ=60)
AGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTC > SRR4302544.3977178/1‑94 (MQ=60)
AGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTC < SRR4302544.478295/94‑1 (MQ=60)
CAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCC > SRR4302544.4434699/1‑94 (MQ=60)
AAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCT > SRR4302544.2698492/1‑94 (MQ=60)
ACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGC > SRR4302544.3023322/1‑94 (MQ=60)
CCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCG > SRR4302544.596376/1‑94 (MQ=60)
CCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCG < SRR4302544.2889169/94‑1 (MQ=60)
TGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGAT < SRR4302544.3564807/94‑1 (MQ=60)
GGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGAT < SRR4302544.905169/94‑1 (MQ=60)
GCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATT < SRR4302544.79973/94‑1 (MQ=60)
CCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTC < SRR4302544.1021179/94‑1 (MQ=60)
CCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTC < SRR4302544.176260/94‑1 (MQ=60)
CCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTC < SRR4302544.1079805/94‑1 (MQ=60)
CGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCG < SRR4302544.45075/94‑1 (MQ=60)
CGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCG > SRR4302544.2444474/1‑94 (MQ=60)
CACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCG < SRR4302544.2023331/94‑1 (MQ=60)
ACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGG < SRR4302544.3264176/94‑1 (MQ=60)
ACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGG > SRR4302544.1924687/1‑94 (MQ=60)
GCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGAC < SRR4302544.448978/94‑1 (MQ=60)
GCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGAC < SRR4302544.1533164/94‑1 (MQ=60)
ACCCCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGA < SRR4302544.2141649/94‑1 (MQ=60)
CACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGAC > SRR4302544.3199964/1‑94 (MQ=60)
CACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGAC < SRR4302544.1841974/94‑1 (MQ=60)
ACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACG < SRR4302544.1359282/94‑1 (MQ=60)
ACCCGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACG < SRR4302544.1359281/94‑1 (MQ=60)
CGGTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATA < SRR4302544.1407184/94‑1 (MQ=60)
GTGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACC < SRR4302544.4719802/94‑1 (MQ=60)
TGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCG > SRR4302544.610541/1‑94 (MQ=60)
TGCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCG > SRR4302544.728216/1‑94 (MQ=60)
GCAACGATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGA > SRR4302544.3473514/1‑94 (MQ=60)
GATACAGCCTTTTTCCGGATAACCCATTACCGGTTCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATA < SRR4302544.4624317/94‑1 (MQ=60)
ATACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATAT < SRR4302544.4787311/94‑1 (MQ=60)
TACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATG > SRR4302544.933741/1‑94 (MQ=60)
ACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGT < SRR4302544.1438026/94‑1 (MQ=60)
ACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGT < SRR4302544.1961211/94‑1 (MQ=60)
ACAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGT > SRR4302544.548617/1‑94 (MQ=60)
CAGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTT > SRR4302544.3491454/1‑94 (MQ=60)
AGCCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTC > SRR4302544.3498627/1‑94 (MQ=60)
CCTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCAC < SRR4302544.1960262/94‑1 (MQ=60)
CTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACC < SRR4302544.4161460/94‑1 (MQ=60)
CTTTTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACC > SRR4302544.1103696/1‑94 (MQ=60)
TTTCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTG < SRR4302544.364280/94‑1 (MQ=60)
TCCGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCT < SRR4302544.4704665/94‑1 (MQ=60)
CGGATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTCC < SRR4302544.126625/94‑1 (MQ=60)
ATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTCCGCC > SRR4302544.729499/1‑94 (MQ=60)
ATAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTCCGCC < SRR4302544.4753710/94‑1 (MQ=60)
TAACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTCCGCCG < SRR4302544.3076447/94‑1 (MQ=60)
AACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTCCGCCGA > SRR4302544.108511/1‑94 (MQ=60)
AACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTCCGCCGA > SRR4302544.4299703/1‑94 (MQ=60)
AACCCATTACCGGACCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTCCGCCGA > SRR4302544.3165328/1‑94 (MQ=60)
|
CCAGATTTGGCGCAATGATATCGCTGGCAGGCAAACCGTGCCGCACATGAAACTCTGCGACACCCGGTGCAACGATACAGCCTTTTTCCGGATGACCCATTACCGGATCGCAAAAATATTTCGCCTGCGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTCCGCCGA > NC_000913/1713472‑1713658
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
