Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,725,518 |
(G)6→5 |
coding (836/1098 nt) |
nemA → |
N‑ethylmaleimide reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,725,513 | 0 | G | . | 100.0%
| 570.3
/ NA
| 125 | coding (831/1098 nt) | nemA | N‑ethylmaleimide reductase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (57/68); total (57/68) |
Only 100 of 141 total aligned reads displayed.
GGCCCGAATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCGGGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGT > NC_000913/1725421‑1725599
|
ggCCCGAATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCg > 1:411956/1‑93 (MQ=255)
gCCCGAATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCgg < 2:3097826/93‑1 (MQ=255)
cGAATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCggggg > 2:2130086/1‑93 (MQ=255)
aaTGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCCTATGTCAGAACCAGATTGGGCgggggtg > 1:1303966/1‑91 (MQ=255)
aaTGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCgggggtg > 1:2982936/1‑91 (MQ=255)
aaTGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCgggggtg > 1:1727337/1‑91 (MQ=255)
aaTGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGAATTGCTTATCTGCATATGTCAGAACCAGATTGGGCgggggtg > 1:1303967/1‑91 (MQ=255)
aaTGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGAGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCggggggg > 2:1562514/1‑92 (MQ=255)
aTGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCgggggtga < 1:2429590/93‑4 (MQ=255)
tGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCgggggtgaa < 1:2321600/93‑5 (MQ=255)
tGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACAAGATTGGGCgggggtgaa > 2:470078/1‑89 (MQ=255)
gaagaaGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACTCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAAc > 1:2677342/1‑93 (MQ=255)
agaagCCGATGCACTGTATCTGATTGATCAACTGAGTAAACGCGGCATTGCTTATCTGCATATGTCACAGCCAGATTGGGC‑GGGGGTGAACCg < 2:2344046/93‑1 (MQ=255)
aaagCCGATGCACTGTATCTGATTGAACAACTGGGTAATCGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGt < 1:1001574/92‑1 (MQ=255)
aaagCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGt < 2:1077230/92‑1 (MQ=255)
agCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGtat > 1:477690/1‑93 (MQ=255)
agCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGtat > 2:1373930/1‑93 (MQ=255)
gCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGtata > 2:4320139/1‑93 (MQ=255)
gCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGtata < 1:2196538/93‑1 (MQ=255)
cGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACt < 2:3489889/93‑1 (MQ=255)
cGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACt > 2:553750/1‑93 (MQ=255)
gATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTg < 1:1035869/93‑1 (MQ=255)
aTGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGa > 1:2020156/1‑93 (MQ=255)
aTGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGa < 2:4575810/93‑1 (MQ=255)
aTGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGa < 1:3636588/93‑1 (MQ=255)
tGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGAt < 1:3545316/93‑1 (MQ=255)
gCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATg < 2:3991434/93‑1 (MQ=255)
gCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATg > 2:2559213/1‑93 (MQ=255)
gCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATg < 1:2271407/93‑1 (MQ=255)
gCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGCGAACCGTATACTGATg > 2:2559214/1‑93 (MQ=255)
cACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGc < 1:2094136/93‑1 (MQ=255)
aCTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCg > 2:4002711/1‑93 (MQ=255)
aCTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCg < 2:2761981/93‑1 (MQ=255)
aCTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCg < 2:2616393/93‑1 (MQ=255)
cTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGt > 1:1635164/1‑93 (MQ=255)
cTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGt > 1:1635163/1‑93 (MQ=255)
gTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTc > 1:3646399/1‑93 (MQ=255)
tATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAATCCTATACTGATGCGTTcc > 2:4427363/1‑93 (MQ=255)
aTCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCcg < 1:1840044/93‑1 (MQ=255)
aTCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCcg < 1:476282/93‑1 (MQ=255)
tCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCcgc > 1:3423064/1‑93 (MQ=255)
cTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCcgcg > 1:3592117/1‑93 (MQ=255)
ttGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGaaaa > 2:3502990/1‑93 (MQ=255)
tGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGaaaaa < 1:1337607/93‑1 (MQ=255)
tGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGaaaaa < 2:1440175/93‑1 (MQ=255)
acaacTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTa < 1:1306836/93‑1 (MQ=255)
acaacTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTa < 1:1989358/93‑1 (MQ=255)
acaacTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTa < 1:3009227/93‑1 (MQ=255)
aacTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTAcg > 2:3290519/1‑93 (MQ=255)
aacTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTAcg < 2:2901/93‑1 (MQ=255)
aacTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTAcg < 2:2693035/93‑1 (MQ=255)
acTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTAcgc < 2:2301534/93‑1 (MQ=255)
acTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTAcgc < 2:1857534/93‑1 (MQ=255)
acTGGGCAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTAcgc > 2:3446960/1‑93 (MQ=255)
tGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACgcgc > 2:1191091/1‑93 (MQ=255)
tGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTACGCGAAAAAGTACgcgc > 2:2972770/1‑93 (MQ=255)
ggTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGccc > 1:325104/1‑93 (MQ=255)
ggTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGccc < 1:2553863/93‑1 (MQ=255)
tAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGt > 1:2614315/1‑93 (MQ=255)
aaaCGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGtt < 1:2009410/93‑1 (MQ=255)
aaaCGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGtt < 2:1709575/93‑1 (MQ=255)
aaaCGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGtt < 2:4186294/93‑1 (MQ=255)
aCGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTc < 2:1270310/93‑1 (MQ=255)
aCGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTc < 2:2532158/93‑1 (MQ=255)
gcgGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTccc > 2:3632735/1‑92 (MQ=255)
gcgGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCa < 1:448811/93‑1 (MQ=255)
gcgGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGCTTCCa > 1:300218/1‑93 (MQ=255)
cgGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCAc < 2:1410741/93‑1 (MQ=255)
ggCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACg > 2:1917630/1‑93 (MQ=255)
ggCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACg < 1:2681759/93‑1 (MQ=255)
gaaTTGCTTATCTGCATATGTCAGAACCAGATGGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACgg < 1:3433385/91‑1 (MQ=255)
gCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACgg < 1:4072594/93‑1 (MQ=255)
gCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACgg < 2:2897606/93‑1 (MQ=255)
cATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGt < 1:1200261/93‑1 (MQ=255)
aTTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTc < 1:1506490/93‑1 (MQ=255)
aTTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTc > 2:3305948/1‑93 (MQ=255)
gCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGa > 1:4514876/1‑93 (MQ=255)
tATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTa < 2:1175548/93‑1 (MQ=255)
cTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCg < 1:1903179/93‑1 (MQ=255)
tGCATATGTCGGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGGACGCGCCCGTTTCCACGCTCCGATTATCgg > 2:162504/1‑93 (MQ=255)
tGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAGCCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCgg > 2:162372/1‑93 (MQ=255)
gCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGgc > 1:3153368/1‑93 (MQ=255)
cATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTATGAGCTTGTTTCCACGGTCCGATTATCGgcg > 2:3958529/1‑93 (MQ=255)
atatGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGgcgc > 1:4739838/1‑93 (MQ=255)
atGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAg < 1:1079922/93‑1 (MQ=255)
tGTCAGAACCAGATTGGGC‑GTGGGTGAACCGTATACTGATTCGTTCCGTGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAgg < 1:2725559/93‑1 (MQ=255)
tGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAgg > 1:667332/1‑93 (MQ=255)
gTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAggg > 1:1945728/1‑92 (MQ=255)
gTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGt < 2:4389285/93‑1 (MQ=255)
tCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTg < 2:4566187/93‑1 (MQ=255)
aGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCa < 2:1808718/93‑1 (MQ=255)
aGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCa < 1:4185811/93‑1 (MQ=255)
gAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCAt > 1:1644333/1‑93 (MQ=255)
aCCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATac > 1:1187098/1‑93 (MQ=255)
ccAGATTGGGCGGGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATac < 1:2731681/93‑1 (MQ=255)
ccAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATaca < 2:4231525/93‑1 (MQ=255)
gATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAg > 2:3986305/1‑93 (MQ=255)
gATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAg < 1:2639224/93‑1 (MQ=255)
gATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAg > 1:3230090/1‑93 (MQ=255)
aTTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGt > 1:967306/1‑93 (MQ=255)
|
GGCCCGAATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCGGGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGT > NC_000913/1725421‑1725599
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCGGGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAAGCTGA > NC_000913/1725428‑1725611
|
ATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAA < SRR4302544.2452715/94‑1 (MQ=60)
TGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACTCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAAC > SRR4302544.2703001/1‑94 (MQ=60)
TGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAAC < SRR4302544.2343601/94‑1 (MQ=60)
AAGAAGCCGATGCACTGTATCTGGTTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCG > SRR4302544.4386398/1‑94 (MQ=60)
AAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAATCGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTA < SRR4302544.1011505/94‑1 (MQ=60)
AAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTAT > SRR4302544.482366/1‑94 (MQ=60)
GCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATAC < SRR4302544.2217254/94‑1 (MQ=60)
CGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTG > SRR4302544.1342879/1‑94 (MQ=60)
GATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGA < SRR4302544.1046170/94‑1 (MQ=60)
GATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGA > SRR4302544.2039764/1‑94 (MQ=60)
GATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGA > SRR4302544.466218/1‑94 (MQ=60)
ATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGAT < SRR4302544.3672861/94‑1 (MQ=60)
TGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATG < SRR4302544.3579262/94‑1 (MQ=60)
GCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGC < SRR4302544.2292785/94‑1 (MQ=60)
CACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCG < SRR4302544.2114290/94‑1 (MQ=60)
ACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGT > SRR4302544.1651259/1‑94 (MQ=60)
ACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGT > SRR4302544.1651260/1‑94 (MQ=60)
TGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTC > SRR4302544.3682783/1‑94 (MQ=60)
ATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGC < SRR4302544.480949/94‑1 (MQ=60)
ATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGC < SRR4302544.1857894/94‑1 (MQ=60)
ATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGC > SRR4302544.3455793/1‑94 (MQ=60)
TCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCG > SRR4302544.3626615/1‑94 (MQ=60)
TCTGATTGAACAACTGGGTAAACGCGGCATGGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCG < SRR4302544.3101073/94‑1 (MQ=60)
ATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAA > SRR4302544.2886689/1‑94 (MQ=60)
TGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG < SRR4302544.1350801/94‑1 (MQ=60)
ACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTAC < SRR4302544.2008671/94‑1 (MQ=60)
ACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTAC < SRR4302544.3038074/94‑1 (MQ=60)
ACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTAC < SRR4302544.1319686/94‑1 (MQ=60)
AACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGC < SRR4302544.583290/94‑1 (MQ=60)
GGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCC > SRR4302544.328485/1‑94 (MQ=60)
GGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCG < SRR4302544.2578381/94‑1 (MQ=60)
GTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGT > SRR4302544.2639414/1‑94 (MQ=60)
AAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTT < SRR4302544.2028935/94‑1 (MQ=60)
AAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTT < SRR4302544.2028934/94‑1 (MQ=60)
AAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTT > SRR4302544.1876518/1‑94 (MQ=60)
CGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGCTTCCA > SRR4302544.303324/1‑94 (MQ=60)
GCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCAC < SRR4302544.453273/94‑1 (MQ=60)
GGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGG < SRR4302544.2707454/94‑1 (MQ=60)
GCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGT < SRR4302544.4113123/94‑1 (MQ=60)
GAATTGCTTATCTGCATATGTCAGAACCAGATGGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGT < SRR4302544.3466207/94‑1 (MQ=60)
CATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTC < SRR4302544.1212148/94‑1 (MQ=60)
ATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCC < SRR4302544.1521421/94‑1 (MQ=60)
TGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGA > SRR4302544.4560097/1‑94 (MQ=60)
CTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATT < SRR4302544.2244712/94‑1 (MQ=60)
TATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTAT < SRR4302544.1136798/94‑1 (MQ=60)
TCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCG < SRR4302544.3501066/94‑1 (MQ=60)
CTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGG < SRR4302544.1921574/94‑1 (MQ=60)
TGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGC > SRR4302544.3183362/1‑94 (MQ=60)
CATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGC > SRR4302544.4786553/1‑94 (MQ=60)
ATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGG < SRR4302544.1090658/94‑1 (MQ=60)
ATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGG > SRR4302544.673921/1‑94 (MQ=60)
TGTCAGAACCAGATTGGGC‑GTGGGTGAACCGTATACTGATTCGTTCCGTGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGT < SRR4302544.2751805/94‑1 (MQ=60)
TGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGT < SRR4302544.1536151/94‑1 (MQ=60)
TGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGG > SRR4302544.1964568/1‑94 (MQ=60)
CAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCA > SRR4302544.2543578/1‑94 (MQ=60)
CAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCA < SRR4302544.2104222/94‑1 (MQ=60)
AGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCAT > SRR4302544.1660545/1‑94 (MQ=60)
AGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCAT < SRR4302544.1675283/94‑1 (MQ=60)
AGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCAT < SRR4302544.4227266/94‑1 (MQ=60)
AGAACCAGATTGGGC‑GGGGGCGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCAT > SRR4302544.1260890/1‑94 (MQ=60)
GAACGAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATA < SRR4302544.4327375/94‑1 (MQ=60)
AACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATAC > SRR4302544.1198889/1‑94 (MQ=60)
CCAGATTGGGCGGGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACA < SRR4302544.2758012/94‑1 (MQ=60)
CCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACAC < SRR4302544.3638712/94‑1 (MQ=60)
CAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACA > SRR4302544.2644791/1‑94 (MQ=60)
AGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAG < SRR4302544.3842565/94‑1 (MQ=60)
AGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAG > SRR4302544.3260996/1‑94 (MQ=60)
AGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAG > SRR4302544.3260995/1‑94 (MQ=60)
GATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGT < SRR4302544.2664523/94‑1 (MQ=60)
GATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGT > SRR4302544.976790/1‑94 (MQ=60)
CGGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAA > SRR4302544.3038514/1‑94 (MQ=60)
GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAAG > SRR4302544.4277320/1‑94 (MQ=60)
GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAAG > SRR4302544.1722496/1‑94 (MQ=60)
GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAAC > SRR4302544.1460029/1‑94 (MQ=60)
GGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAAGCT < SRR4302544.2208126/94‑1 (MQ=60)
GGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAAGCT < SRR4302544.1579322/94‑1 (MQ=60)
GTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAAGCTGA < SRR4302544.3800522/94‑1 (MQ=60)
GTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAAGCTGA < SRR4302544.1182453/94‑1 (MQ=60)
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ATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCGGGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAAGCTGA > NC_000913/1725428‑1725611
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
