Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,812,482 |
T→C |
F198L (TTC→CTC) |
katE → |
catalase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,812,482 | 0 | T | C | 100.0%
| 514.8
/ NA
| 156 | F198L (TTC→CTC) | katE | catalase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (66/90); total (66/90) |
Only 100 of 159 total aligned reads displayed.
ACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACTTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGG > NC_000913/1812392‑1812571
|
cGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGt < 1:2419730/93‑1 (MQ=255)
ggtCAGGGTCGTGGTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATGCCGAAGAGGGTATTTTTGACCGCGtt < 2:882421/91‑1 (MQ=255)
gTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGtt < 2:3563710/93‑1 (MQ=255)
gTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGtt < 1:2752476/93‑1 (MQ=255)
gTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGtt < 2:3513360/93‑1 (MQ=255)
gTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGtt < 2:2371179/93‑1 (MQ=255)
gTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGtt < 1:4676641/93‑1 (MQ=255)
gTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGtt < 1:4402495/93‑1 (MQ=255)
gggTGGTGCTGGCTCTGCTGATACCGTGCGTGATATGCGTGGCTGTGTCACCAAGTTCTATACCGAAGAGTGTATTTTTGACCTCGTTGGcga > 2:633599/1‑91 (MQ=255)
gggTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGGATTTTTGACCTCGTTGGCaa > 1:4268375/1‑93 (MQ=255)
gtggtgCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATa > 2:2280901/1‑93 (MQ=255)
tggtgCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATaa < 1:2756571/93‑1 (MQ=255)
ggtgCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAac < 1:1148911/93‑1 (MQ=255)
ggtgCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAac > 1:1571124/1‑93 (MQ=255)
cTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGc > 1:3550379/1‑93 (MQ=255)
ggCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCa > 2:927833/1‑93 (MQ=255)
ggCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCa > 2:355825/1‑93 (MQ=255)
gCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCaa < 2:3058129/93‑1 (MQ=255)
gCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCaa < 2:10239/93‑1 (MQ=255)
gCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCaa > 1:3451107/1‑93 (MQ=255)
tctGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtc < 1:2314443/93‑1 (MQ=255)
ctgctgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtct < 1:1700918/93‑1 (MQ=255)
tgctgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtctt > 1:894174/1‑93 (MQ=255)
tctgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtcttc < 1:2935301/92‑1 (MQ=255)
gctgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtcttc < 2:1182475/93‑1 (MQ=255)
gctgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtcttc > 1:2029299/1‑93 (MQ=255)
atgccGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTa < 1:1759567/90‑1 (MQ=255)
aTACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTa > 2:761649/1‑93 (MQ=255)
aTACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTa < 1:3719813/93‑1 (MQ=255)
aTACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTa < 1:3719815/93‑1 (MQ=255)
tACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAt > 1:1838975/1‑93 (MQ=255)
ccGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATcc < 2:1516883/93‑1 (MQ=255)
ccGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATcc < 1:2504502/93‑1 (MQ=255)
cgtgcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCttt < 2:4136183/88‑1 (MQ=255)
cgtgcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCttt > 1:4136183/1‑88 (MQ=255)
cgtgcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCa < 1:1271364/93‑1 (MQ=255)
cgtgcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCa < 1:328660/93‑1 (MQ=255)
gtgcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAg < 1:3937343/93‑1 (MQ=255)
gcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGa < 2:1858351/93‑1 (MQ=255)
gtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATg > 2:1355692/1‑93 (MQ=255)
gtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATg < 2:648094/93‑1 (MQ=255)
tgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATgc < 2:2455940/93‑1 (MQ=255)
gATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATgcg < 1:2037365/93‑1 (MQ=255)
gATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATgcg > 2:3371664/1‑93 (MQ=255)
tatCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCa > 2:3229122/1‑93 (MQ=255)
tatCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCa > 1:3427845/1‑93 (MQ=255)
tatCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCa > 1:4232567/1‑93 (MQ=255)
tCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATa > 2:3152569/1‑93 (MQ=255)
tCCGGGGCTTTGCCACCAAGTGCGATACCGAAGAGGGGAGGCGTGACCTCGCCGGCAACAACACGCCAAGCTTCGGTAGCCAGGATGCGCaca > 1:3607009/1‑91 (MQ=255)
ccGTTGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATaa < 1:4043438/93‑1 (MQ=255)
ccGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATaa < 1:4333309/93‑1 (MQ=255)
cGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATaaa > 2:2873365/1‑93 (MQ=255)
cGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATaaa > 1:4385492/1‑93 (MQ=255)
gTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGGAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAAt < 2:48343/93‑1 (MQ=255)
gTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAAt > 2:3523299/1‑93 (MQ=255)
tGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAAtt > 2:3023870/1‑93 (MQ=255)
ggCTTTGCCTCCAAGTTCTATACCGAAGAGGGTATTTTTGCCCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTc < 2:4381640/93‑1 (MQ=255)
gCTTTGAAACCAAGTTCTATACAGCAGAGGGCATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTcc > 2:4233523/1‑93 (MQ=255)
ctctGCCACCAAGTTCTATCCCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAGCTTCTTTATCCAGGATGCGCATAAATTccc < 2:3077859/90‑1 (MQ=255)
cTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTccc < 1:310776/93‑1 (MQ=255)
cTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTccc < 1:3666060/93‑1 (MQ=255)
tttGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATATATTcccc > 1:2128507/1‑93 (MQ=255)
tttGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTcccc < 2:1206184/93‑1 (MQ=255)
tGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGa < 2:2266723/93‑1 (MQ=255)
gCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGAt < 2:1304584/93‑1 (MQ=255)
ccaccaAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGAtt < 1:337924/93‑1 (MQ=255)
accaAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGAtttt > 2:4552399/1‑93 (MQ=255)
accaAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGAtttt > 2:4552400/1‑93 (MQ=255)
ccaAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTg > 2:1860033/1‑93 (MQ=255)
aaGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGtt < 1:2951442/93‑1 (MQ=255)
aaGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGtt > 2:3581590/1‑93 (MQ=255)
aaGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGtt > 2:2979298/1‑93 (MQ=255)
aGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCACGATTTTGTTc > 2:42197/1‑93 (MQ=255)
gTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCa > 1:4798/1‑93 (MQ=255)
gTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCa < 1:4559622/93‑1 (MQ=255)
gTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCa < 2:1155808/93‑1 (MQ=255)
gTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCa < 2:4495147/93‑1 (MQ=255)
ttCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCAt < 1:1576208/93‑1 (MQ=255)
tCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATg < 1:4491199/93‑1 (MQ=255)
tataCCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCg > 2:3639605/1‑93 (MQ=255)
taCCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGt > 2:1156555/1‑93 (MQ=255)
aCCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTa < 1:970698/93‑1 (MQ=255)
aCCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTa < 2:4665982/93‑1 (MQ=255)
ccGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTaa > 1:4569939/1‑93 (MQ=255)
gAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTaaaa < 1:412458/93‑1 (MQ=255)
gagGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCa > 1:2355181/1‑93 (MQ=255)
gagGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCa > 2:105171/1‑93 (MQ=255)
agGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAg < 1:2419796/93‑1 (MQ=255)
agGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAg < 2:445188/93‑1 (MQ=255)
agGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAg < 2:597470/93‑1 (MQ=255)
agGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAg < 1:1029852/93‑1 (MQ=255)
ggTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGaa < 2:1073883/93‑1 (MQ=255)
gTATTTTTGACCTCGTTGGCAATAACCCGCCAATCTGCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAAc < 1:4289168/93‑1 (MQ=255)
gTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAAc < 2:3292123/93‑1 (MQ=255)
gTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAAc < 2:2135804/93‑1 (MQ=255)
aTTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCg > 1:1016398/1‑93 (MQ=255)
tttttGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGc < 2:4122179/93‑1 (MQ=255)
tttttGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGc < 2:2684670/93‑1 (MQ=255)
ttttGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCa < 1:3996776/93‑1 (MQ=255)
ttGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACt > 1:541117/1‑93 (MQ=255)
|
ACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACTTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGG > NC_000913/1812392‑1812571
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACTTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGGGCAA > NC_000913/1812389‑1812575
|
TCTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACC < SRR4302544.3807940/94‑1 (MQ=60)
TCTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACC < SRR4302544.3931283/94‑1 (MQ=60)
TCTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACC < SRR4302544.3931284/94‑1 (MQ=60)
TACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTC < SRR4302544.2859196/94‑1 (MQ=60)
TACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTC > SRR4302544.3342148/1‑94 (MQ=60)
ACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCG > SRR4302544.130384/1‑94 (MQ=60)
CGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTT < SRR4302544.2442770/94‑1 (MQ=60)
GTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTG < SRR4302544.2778978/94‑1 (MQ=60)
GTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTG < SRR4302544.4446974/94‑1 (MQ=60)
GTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTG < SRR4302544.4722865/94‑1 (MQ=60)
GTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTG < SRR4302544.1663770/94‑1 (MQ=60)
GTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTCTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTG < SRR4302544.286970/94‑1 (MQ=60)
AGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAA > SRR4302544.4311938/1‑94 (MQ=60)
AGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGGATTTTTGACCTCGTTGGCAA > SRR4302544.4311937/1‑94 (MQ=60)
TGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAAC > SRR4302544.1586669/1‑94 (MQ=60)
TGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAAC < SRR4302544.2783105/94‑1 (MQ=60)
GGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACA < SRR4302544.1160341/94‑1 (MQ=60)
GTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACAC < SRR4302544.3418285/94‑1 (MQ=60)
TGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACG < SRR4302544.4088108/94‑1 (MQ=60)
GCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGC > SRR4302544.3584383/1‑94 (MQ=60)
TGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCA > SRR4302544.842403/1‑94 (MQ=60)
GGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAA < SRR4302544.1728685/94‑1 (MQ=60)
GGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAA > SRR4302544.3484061/1‑94 (MQ=60)
GCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAT > SRR4302544.4354831/1‑94 (MQ=60)
TCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCT < SRR4302544.2336344/94‑1 (MQ=60)
CTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTT > SRR4302544.903020/1‑94 (MQ=60)
CTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTT > SRR4302544.462031/1‑94 (MQ=60)
CTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTT < SRR4302544.1717703/94‑1 (MQ=60)
TGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTC > SRR4302544.2048954/1‑94 (MQ=60)
TCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCT < SRR4302544.2963497/94‑1 (MQ=60)
GCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCT > SRR4302544.3923926/1‑94 (MQ=60)
ATGCCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAT < SRR4302544.1776785/94‑1 (MQ=60)
ATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAT > SRR4302544.1856816/1‑94 (MQ=60)
ATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAT < SRR4302544.3756810/94‑1 (MQ=60)
ATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAT < SRR4302544.3756808/94‑1 (MQ=60)
ATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAT < SRR4302544.480009/94‑1 (MQ=60)
ACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCC < SRR4302544.2426601/94‑1 (MQ=60)
CCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAagat > SRR4302544.4177154/1‑90 (MQ=60)
CCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCA < SRR4302544.2528514/94‑1 (MQ=60)
CGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAG < SRR4302544.332077/94‑1 (MQ=60)
CGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAG < SRR4302544.1283870/94‑1 (MQ=60)
GTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGG < SRR4302544.3976449/94‑1 (MQ=60)
GTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGG < SRR4302544.2215714/94‑1 (MQ=60)
GATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGC < SRR4302544.2057046/94‑1 (MQ=60)
ATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCA > SRR4302544.3460617/1‑94 (MQ=60)
ATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCA > SRR4302544.4275695/1‑94 (MQ=60)
CCGTTGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAA < SRR4302544.4083707/94‑1 (MQ=60)
CCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAA > SRR4302544.4429895/1‑94 (MQ=60)
CCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAA < SRR4302544.4377424/94‑1 (MQ=60)
GTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATT < SRR4302544.3705680/94‑1 (MQ=60)
CTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATATATTCCCC > SRR4302544.2148904/1‑94 (MQ=60)
CTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCC < SRR4302544.3702618/94‑1 (MQ=60)
CTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCC < SRR4302544.314005/94‑1 (MQ=60)
TTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCG < SRR4302544.4054726/94‑1 (MQ=60)
CCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTT < SRR4302544.341429/94‑1 (MQ=60)
CACCAAGTTCTATACCGAAGAGGGGATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCACGATTAT > SRR4302544.2092034/1‑94 (MQ=60)
AAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTC < SRR4302544.2979795/94‑1 (MQ=60)
AGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCA < SRR4302544.4250695/94‑1 (MQ=60)
AGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCA > SRR4302544.4839/1‑94 (MQ=60)
GTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCAT < SRR4302544.4605101/94‑1 (MQ=60)
TTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATG < SRR4302544.4443289/94‑1 (MQ=60)
TTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATG < SRR4302544.1591790/94‑1 (MQ=60)
TCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGC < SRR4302544.4536288/94‑1 (MQ=60)
ATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGT < SRR4302544.3578855/94‑1 (MQ=60)
ACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAA > SRR4302544.4615493/1‑94 (MQ=60)
ACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAA < SRR4302544.980216/94‑1 (MQ=60)
GAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCTATTTTGTTCATGCTGTAAAAC > SRR4302544.4562727/1‑94 (MQ=60)
GAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAAC < SRR4302544.416662/94‑1 (MQ=60)
AGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCA > SRR4302544.2377496/1‑94 (MQ=60)
AGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGA < SRR4302544.2442836/94‑1 (MQ=60)
AGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGA < SRR4302544.1040114/94‑1 (MQ=60)
AGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGA > SRR4302544.195420/1‑94 (MQ=60)
GTATTTTTGACCTCGTTGGCAATAACCCGCCAATCTGCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACC < SRR4302544.4332975/94‑1 (MQ=60)
TATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCG > SRR4302544.1026540/1‑94 (MQ=60)
ATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGC > SRR4302544.3072810/1‑94 (MQ=60)
TTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCAC < SRR4302544.249677/94‑1 (MQ=60)
TTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCAC < SRR4302544.4036560/94‑1 (MQ=60)
TTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACT > SRR4302544.546447/1‑94 (MQ=60)
TTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACT < SRR4302544.1095842/94‑1 (MQ=60)
TGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGG < SRR4302544.2683082/94‑1 (MQ=60)
GACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGGG < SRR4302544.367923/94‑1 (MQ=60)
CTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGGGCAA > SRR4302544.195007/1‑94 (MQ=60)
CTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCACATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGGGCAA > SRR4302544.1357051/1‑94 (MQ=60)
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TCTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACTTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGGGCAA > NC_000913/1812389‑1812575
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |