Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1357 179.3 9500450 96.1% 9129932 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,812,482 T→C F198L (TTC→CTC)  katE → catalase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,812,4820TC100.0% 514.8 / NA 156F198L (TTC→CTC) katEcatalase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (66/90);  total (66/90)

Only 100 of 159 total aligned reads displayed.

ACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACTTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGG  >  NC_000913/1812392‑1812571
                                                                                          |                                                                                         
  cGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGt                                                                                       <  1:2419730/93‑1 (MQ=255)
   ggtCAGGGTCGTGGTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATGCCGAAGAGGGTATTTTTGACCGCGtt                                                                                      <  2:882421/91‑1 (MQ=255)
   gTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGtt                                                                                      <  2:3563710/93‑1 (MQ=255)
   gTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGtt                                                                                      <  1:2752476/93‑1 (MQ=255)
   gTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGtt                                                                                      <  2:3513360/93‑1 (MQ=255)
   gTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGtt                                                                                      <  2:2371179/93‑1 (MQ=255)
   gTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGtt                                                                                      <  1:4676641/93‑1 (MQ=255)
   gTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGtt                                                                                      <  1:4402495/93‑1 (MQ=255)
        gggTGGTGCTGGCTCTGCTGATACCGTGCGTGATATGCGTGGCTGTGTCACCAAGTTCTATACCGAAGAGTGTATTTTTGACCTCGTTGGcga                                                                                 >  2:633599/1‑91 (MQ=255)
        gggTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGGATTTTTGACCTCGTTGGCaa                                                                                 >  1:4268375/1‑93 (MQ=255)
          gtggtgCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATa                                                                               >  2:2280901/1‑93 (MQ=255)
           tggtgCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATaa                                                                              <  1:2756571/93‑1 (MQ=255)
            ggtgCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAac                                                                             <  1:1148911/93‑1 (MQ=255)
            ggtgCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAac                                                                             >  1:1571124/1‑93 (MQ=255)
                cTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGc                                                                         >  1:3550379/1‑93 (MQ=255)
                  ggCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCa                                                                       >  2:927833/1‑93 (MQ=255)
                  ggCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCa                                                                       >  2:355825/1‑93 (MQ=255)
                   gCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCaa                                                                      <  2:3058129/93‑1 (MQ=255)
                   gCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCaa                                                                      <  2:10239/93‑1 (MQ=255)
                   gCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCaa                                                                      >  1:3451107/1‑93 (MQ=255)
                     tctGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtc                                                                    <  1:2314443/93‑1 (MQ=255)
                      ctgctgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtct                                                                   <  1:1700918/93‑1 (MQ=255)
                       tgctgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtctt                                                                  >  1:894174/1‑93 (MQ=255)
                        tctgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtcttc                                                                 <  1:2935301/92‑1 (MQ=255)
                        gctgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtcttc                                                                 <  2:1182475/93‑1 (MQ=255)
                        gctgATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAtcttc                                                                 >  1:2029299/1‑93 (MQ=255)
                            atgccGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTa                                                             <  1:1759567/90‑1 (MQ=255)
                            aTACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTa                                                             >  2:761649/1‑93 (MQ=255)
                            aTACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTa                                                             <  1:3719813/93‑1 (MQ=255)
                            aTACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTa                                                             <  1:3719815/93‑1 (MQ=255)
                             tACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAt                                                            >  1:1838975/1‑93 (MQ=255)
                               ccGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATcc                                                          <  2:1516883/93‑1 (MQ=255)
                               ccGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATcc                                                          <  1:2504502/93‑1 (MQ=255)
                                cgtgcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCttt                                                              <  2:4136183/88‑1 (MQ=255)
                                cgtgcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCttt                                                              >  1:4136183/1‑88 (MQ=255)
                                cgtgcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCa                                                         <  1:1271364/93‑1 (MQ=255)
                                cgtgcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCa                                                         <  1:328660/93‑1 (MQ=255)
                                 gtgcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAg                                                        <  1:3937343/93‑1 (MQ=255)
                                   gcgtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGa                                                      <  2:1858351/93‑1 (MQ=255)
                                     gtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATg                                                    >  2:1355692/1‑93 (MQ=255)
                                     gtgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATg                                                    <  2:648094/93‑1 (MQ=255)
                                      tgATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATgc                                                   <  2:2455940/93‑1 (MQ=255)
                                       gATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATgcg                                                  <  1:2037365/93‑1 (MQ=255)
                                       gATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATgcg                                                  >  2:3371664/1‑93 (MQ=255)
                                         tatCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCa                                                >  2:3229122/1‑93 (MQ=255)
                                         tatCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCa                                                >  1:3427845/1‑93 (MQ=255)
                                         tatCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCa                                                >  1:4232567/1‑93 (MQ=255)
                                           tCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATa                                              >  2:3152569/1‑93 (MQ=255)
                                           tCCGGGGCTTTGCCACCAAGTGCGATACCGAAGAGGGGAGGCGTGACCTCGCCGGCAACAACACGCCAAGCTTCGGTAGCCAGGATGCGCaca                                              >  1:3607009/1‑91 (MQ=255)
                                            ccGTTGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATaa                                             <  1:4043438/93‑1 (MQ=255)
                                            ccGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATaa                                             <  1:4333309/93‑1 (MQ=255)
                                             cGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATaaa                                            >  2:2873365/1‑93 (MQ=255)
                                             cGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATaaa                                            >  1:4385492/1‑93 (MQ=255)
                                              gTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGGAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAAt                                           <  2:48343/93‑1 (MQ=255)
                                              gTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAAt                                           >  2:3523299/1‑93 (MQ=255)
                                               tGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAAtt                                          >  2:3023870/1‑93 (MQ=255)
                                                ggCTTTGCCTCCAAGTTCTATACCGAAGAGGGTATTTTTGCCCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTc                                         <  2:4381640/93‑1 (MQ=255)
                                                 gCTTTGAAACCAAGTTCTATACAGCAGAGGGCATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTcc                                        >  2:4233523/1‑93 (MQ=255)
                                                  ctctGCCACCAAGTTCTATCCCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAGCTTCTTTATCCAGGATGCGCATAAATTccc                                       <  2:3077859/90‑1 (MQ=255)
                                                  cTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTccc                                       <  1:310776/93‑1 (MQ=255)
                                                  cTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTccc                                       <  1:3666060/93‑1 (MQ=255)
                                                   tttGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATATATTcccc                                      >  1:2128507/1‑93 (MQ=255)
                                                   tttGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTcccc                                      <  2:1206184/93‑1 (MQ=255)
                                                     tGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGa                                    <  2:2266723/93‑1 (MQ=255)
                                                      gCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGAt                                   <  2:1304584/93‑1 (MQ=255)
                                                       ccaccaAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGAtt                                  <  1:337924/93‑1 (MQ=255)
                                                         accaAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGAtttt                                >  2:4552399/1‑93 (MQ=255)
                                                         accaAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGAtttt                                >  2:4552400/1‑93 (MQ=255)
                                                          ccaAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTg                               >  2:1860033/1‑93 (MQ=255)
                                                            aaGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGtt                             <  1:2951442/93‑1 (MQ=255)
                                                            aaGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGtt                             >  2:3581590/1‑93 (MQ=255)
                                                            aaGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGtt                             >  2:2979298/1‑93 (MQ=255)
                                                             aGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCACGATTTTGTTc                            >  2:42197/1‑93 (MQ=255)
                                                              gTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCa                           >  1:4798/1‑93 (MQ=255)
                                                              gTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCa                           <  1:4559622/93‑1 (MQ=255)
                                                              gTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCa                           <  2:1155808/93‑1 (MQ=255)
                                                              gTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCa                           <  2:4495147/93‑1 (MQ=255)
                                                               ttCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCAt                          <  1:1576208/93‑1 (MQ=255)
                                                                tCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATg                         <  1:4491199/93‑1 (MQ=255)
                                                                  tataCCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCg                       >  2:3639605/1‑93 (MQ=255)
                                                                    taCCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGt                     >  2:1156555/1‑93 (MQ=255)
                                                                     aCCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTa                    <  1:970698/93‑1 (MQ=255)
                                                                     aCCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTa                    <  2:4665982/93‑1 (MQ=255)
                                                                      ccGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTaa                   >  1:4569939/1‑93 (MQ=255)
                                                                        gAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTaaaa                 <  1:412458/93‑1 (MQ=255)
                                                                           gagGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCa              >  1:2355181/1‑93 (MQ=255)
                                                                           gagGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCa              >  2:105171/1‑93 (MQ=255)
                                                                            agGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAg             <  1:2419796/93‑1 (MQ=255)
                                                                            agGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAg             <  2:445188/93‑1 (MQ=255)
                                                                            agGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAg             <  2:597470/93‑1 (MQ=255)
                                                                            agGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAg             <  1:1029852/93‑1 (MQ=255)
                                                                              ggTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGaa           <  2:1073883/93‑1 (MQ=255)
                                                                               gTATTTTTGACCTCGTTGGCAATAACCCGCCAATCTGCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAAc          <  1:4289168/93‑1 (MQ=255)
                                                                               gTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAAc          <  2:3292123/93‑1 (MQ=255)
                                                                               gTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAAc          <  2:2135804/93‑1 (MQ=255)
                                                                                 aTTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCg        >  1:1016398/1‑93 (MQ=255)
                                                                                  tttttGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGc       <  2:4122179/93‑1 (MQ=255)
                                                                                  tttttGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGc       <  2:2684670/93‑1 (MQ=255)
                                                                                   ttttGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCa      <  1:3996776/93‑1 (MQ=255)
                                                                                     ttGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACt    >  1:541117/1‑93 (MQ=255)
                                                                                          |                                                                                         
ACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACTTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGG  >  NC_000913/1812392‑1812571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACTTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGGGCAA  >  NC_000913/1812389‑1812575
                                                                                             |                                                                                             
TCTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACC                                                                                               <  SRR4302544.3807940/94‑1 (MQ=60)
TCTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACC                                                                                               <  SRR4302544.3931283/94‑1 (MQ=60)
TCTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACC                                                                                               <  SRR4302544.3931284/94‑1 (MQ=60)
  TACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTC                                                                                             <  SRR4302544.2859196/94‑1 (MQ=60)
  TACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTC                                                                                             >  SRR4302544.3342148/1‑94 (MQ=60)
   ACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCG                                                                                            >  SRR4302544.130384/1‑94 (MQ=60)
     CGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTT                                                                                          <  SRR4302544.2442770/94‑1 (MQ=60)
      GTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTG                                                                                         <  SRR4302544.2778978/94‑1 (MQ=60)
      GTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTG                                                                                         <  SRR4302544.4446974/94‑1 (MQ=60)
      GTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTG                                                                                         <  SRR4302544.4722865/94‑1 (MQ=60)
      GTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTG                                                                                         <  SRR4302544.1663770/94‑1 (MQ=60)
      GTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTCTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTG                                                                                         <  SRR4302544.286970/94‑1 (MQ=60)
          AGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAA                                                                                     >  SRR4302544.4311938/1‑94 (MQ=60)
          AGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGGATTTTTGACCTCGTTGGCAA                                                                                     >  SRR4302544.4311937/1‑94 (MQ=60)
              TGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAAC                                                                                 >  SRR4302544.1586669/1‑94 (MQ=60)
              TGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAAC                                                                                 <  SRR4302544.2783105/94‑1 (MQ=60)
               GGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACA                                                                                <  SRR4302544.1160341/94‑1 (MQ=60)
                GTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACAC                                                                               <  SRR4302544.3418285/94‑1 (MQ=60)
                 TGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACG                                                                              <  SRR4302544.4088108/94‑1 (MQ=60)
                  GCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGC                                                                             >  SRR4302544.3584383/1‑94 (MQ=60)
                    TGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCA                                                                           >  SRR4302544.842403/1‑94 (MQ=60)
                     GGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAA                                                                          <  SRR4302544.1728685/94‑1 (MQ=60)
                     GGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAA                                                                          >  SRR4302544.3484061/1‑94 (MQ=60)
                      GCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAAT                                                                         >  SRR4302544.4354831/1‑94 (MQ=60)
                        TCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCT                                                                       <  SRR4302544.2336344/94‑1 (MQ=60)
                         CTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTT                                                                      >  SRR4302544.903020/1‑94 (MQ=60)
                         CTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTT                                                                      >  SRR4302544.462031/1‑94 (MQ=60)
                         CTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTT                                                                      <  SRR4302544.1717703/94‑1 (MQ=60)
                          TGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTC                                                                     >  SRR4302544.2048954/1‑94 (MQ=60)
                           TCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCT                                                                    <  SRR4302544.2963497/94‑1 (MQ=60)
                           GCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCT                                                                    >  SRR4302544.3923926/1‑94 (MQ=60)
                               ATGCCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAT                                                                <  SRR4302544.1776785/94‑1 (MQ=60)
                               ATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAT                                                                >  SRR4302544.1856816/1‑94 (MQ=60)
                               ATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAT                                                                <  SRR4302544.3756810/94‑1 (MQ=60)
                               ATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAT                                                                <  SRR4302544.3756808/94‑1 (MQ=60)
                               ATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAT                                                                <  SRR4302544.480009/94‑1 (MQ=60)
                                 ACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCC                                                              <  SRR4302544.2426601/94‑1 (MQ=60)
                                  CCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTAagat                                                             >  SRR4302544.4177154/1‑90 (MQ=60)
                                  CCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCA                                                             <  SRR4302544.2528514/94‑1 (MQ=60)
                                   CGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAG                                                            <  SRR4302544.332077/94‑1 (MQ=60)
                                   CGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAG                                                            <  SRR4302544.1283870/94‑1 (MQ=60)
                                    GTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGG                                                           <  SRR4302544.3976449/94‑1 (MQ=60)
                                    GTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGG                                                           <  SRR4302544.2215714/94‑1 (MQ=60)
                                          GATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGC                                                     <  SRR4302544.2057046/94‑1 (MQ=60)
                                           ATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCA                                                    >  SRR4302544.3460617/1‑94 (MQ=60)
                                           ATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCA                                                    >  SRR4302544.4275695/1‑94 (MQ=60)
                                               CCGTTGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAA                                                <  SRR4302544.4083707/94‑1 (MQ=60)
                                               CCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAA                                                >  SRR4302544.4429895/1‑94 (MQ=60)
                                               CCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAA                                                <  SRR4302544.4377424/94‑1 (MQ=60)
                                                 GTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATT                                              <  SRR4302544.3705680/94‑1 (MQ=60)
                                                     CTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATATATTCCCC                                          >  SRR4302544.2148904/1‑94 (MQ=60)
                                                     CTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCC                                          <  SRR4302544.3702618/94‑1 (MQ=60)
                                                     CTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCC                                          <  SRR4302544.314005/94‑1 (MQ=60)
                                                      TTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCG                                         <  SRR4302544.4054726/94‑1 (MQ=60)
                                                          CCACCAAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTT                                     <  SRR4302544.341429/94‑1 (MQ=60)
                                                           CACCAAGTTCTATACCGAAGAGGGGATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCACGATTAT                                    >  SRR4302544.2092034/1‑94 (MQ=60)
                                                               AAGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTC                                <  SRR4302544.2979795/94‑1 (MQ=60)
                                                                AGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCA                               <  SRR4302544.4250695/94‑1 (MQ=60)
                                                                AGTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCA                               >  SRR4302544.4839/1‑94 (MQ=60)
                                                                 GTTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCAT                              <  SRR4302544.4605101/94‑1 (MQ=60)
                                                                  TTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATG                             <  SRR4302544.4443289/94‑1 (MQ=60)
                                                                  TTCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATG                             <  SRR4302544.1591790/94‑1 (MQ=60)
                                                                   TCTATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGC                            <  SRR4302544.4536288/94‑1 (MQ=60)
                                                                      ATACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGT                         <  SRR4302544.3578855/94‑1 (MQ=60)
                                                                        ACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAA                       >  SRR4302544.4615493/1‑94 (MQ=60)
                                                                        ACCGAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAA                       <  SRR4302544.980216/94‑1 (MQ=60)
                                                                           GAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCTATTTTGTTCATGCTGTAAAAC                    >  SRR4302544.4562727/1‑94 (MQ=60)
                                                                           GAAGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAAC                    <  SRR4302544.416662/94‑1 (MQ=60)
                                                                             AGAGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCA                  >  SRR4302544.2377496/1‑94 (MQ=60)
                                                                               AGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGA                <  SRR4302544.2442836/94‑1 (MQ=60)
                                                                               AGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGA                <  SRR4302544.1040114/94‑1 (MQ=60)
                                                                               AGGGTATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGA                >  SRR4302544.195420/1‑94 (MQ=60)
                                                                                  GTATTTTTGACCTCGTTGGCAATAACCCGCCAATCTGCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACC             <  SRR4302544.4332975/94‑1 (MQ=60)
                                                                                   TATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCG            >  SRR4302544.1026540/1‑94 (MQ=60)
                                                                                    ATTTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGC           >  SRR4302544.3072810/1‑94 (MQ=60)
                                                                                      TTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCAC         <  SRR4302544.249677/94‑1 (MQ=60)
                                                                                      TTTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCAC         <  SRR4302544.4036560/94‑1 (MQ=60)
                                                                                       TTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACT        >  SRR4302544.546447/1‑94 (MQ=60)
                                                                                       TTTGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACT        <  SRR4302544.1095842/94‑1 (MQ=60)
                                                                                         TGACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGG      <  SRR4302544.2683082/94‑1 (MQ=60)
                                                                                          GACCTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGGG     <  SRR4302544.367923/94‑1 (MQ=60)
                                                                                             CTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGGGCAA  >  SRR4302544.195007/1‑94 (MQ=60)
                                                                                             CTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCACATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGGGCAA  >  SRR4302544.1357051/1‑94 (MQ=60)
                                                                                             |                                                                                             
TCTACCGTTCAGGGTGGTGCTGGCTCTGCTGATACCGTGCGTGATATCCGTGGCTTTGCCACCAAGTTCTATACCGAAGAGGGTATTTTTGACTTCGTTGGCAATAACACGCCAATCTTCTTTATCCAGGATGCGCATAAATTCCCCGATTTTGTTCATGCGGTAAAACCAGAACCGCACTGGGCAA  >  NC_000913/1812389‑1812575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: