Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,863,065 |
G→A |
A199V (GCC→GTC) |
b1781 ← |
putative aldehyde reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,863,065 | 0 | G | A | 98.5%
| 465.1
/ ‑3.9
| 137 | A199V (GCC→GTC) | b1781 | putative aldehyde reductase |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (63/72); total (64/73) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.53e-01 |
Only 100 of 145 total aligned reads displayed.
GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG > NC_000913/1862975‑1863157
|
gCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGAcc > 2:2223777/1‑93 (MQ=255)
gCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGAcc < 1:2771843/93‑1 (MQ=255)
gCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGAcc < 1:4557213/93‑1 (MQ=255)
ccAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCt < 1:4310324/93‑1 (MQ=255)
ccAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCt < 2:2956993/93‑1 (MQ=255)
ccAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCt > 1:2841318/1‑93 (MQ=255)
ccAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCt < 2:1535459/93‑1 (MQ=255)
caacaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTg > 1:1603813/1‑93 (MQ=255)
aacaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTgg < 2:1360491/93‑1 (MQ=255)
aacaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTgg > 1:1846028/1‑93 (MQ=255)
caaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGc > 1:1053844/1‑93 (MQ=255)
aaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCt > 2:1381902/1‑93 (MQ=255)
aaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCt > 2:293278/1‑93 (MQ=255)
aTACTTGTGCCGCGCTGATATTGTGAGCATGTTCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTa < 2:182172/93‑1 (MQ=255)
tACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTaa < 1:3838842/93‑1 (MQ=255)
tACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTaa < 1:603366/93‑1 (MQ=255)
aCTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAc < 1:3044450/93‑1 (MQ=255)
aCTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAc < 2:679351/93‑1 (MQ=255)
aCTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAc < 2:679350/93‑1 (MQ=255)
ttGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTGTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACgg > 1:652430/1‑93 (MQ=255)
gtgCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGAc < 2:2314973/93‑1 (MQ=255)
ccGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGt < 1:952612/93‑1 (MQ=255)
cgcgCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTa < 1:1172778/93‑1 (MQ=255)
cgcgCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTa > 2:1206531/1‑93 (MQ=255)
gcgcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTaa > 1:3061621/1‑93 (MQ=255)
gcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGc > 2:823654/1‑93 (MQ=255)
gcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGCCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGGAAGc > 2:823653/1‑93 (MQ=255)
tGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCa > 2:2037258/1‑93 (MQ=255)
gATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCAt > 1:771714/1‑93 (MQ=255)
gATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCAt > 1:3660815/1‑93 (MQ=255)
ttGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAcc < 1:2465957/93‑1 (MQ=255)
tgtgAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCg < 1:3054394/93‑1 (MQ=255)
tgAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGc > 1:2167340/1‑93 (MQ=255)
gAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCa < 2:1217592/93‑1 (MQ=255)
gCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATc < 2:13501/93‑1 (MQ=255)
gCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATc < 2:3716428/93‑1 (MQ=255)
cATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATct < 1:3539844/93‑1 (MQ=255)
cATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATct < 1:4189187/93‑1 (MQ=255)
aTGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctg > 2:1855140/1‑93 (MQ=255)
tgtgCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctgc < 1:2017404/93‑1 (MQ=255)
tgtgCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctgc < 1:944657/93‑1 (MQ=255)
gtgCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctgct > 1:403966/1‑93 (MQ=255)
gCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGt < 1:3237947/93‑1 (MQ=255)
gCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGt < 2:553440/93‑1 (MQ=255)
aaTTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTg > 1:813449/1‑93 (MQ=255)
aTTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGc < 1:1147426/93‑1 (MQ=255)
aTTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGc < 1:791474/93‑1 (MQ=255)
tttCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCt > 2:3424777/1‑93 (MQ=255)
tttCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCt < 2:3688187/93‑1 (MQ=255)
tCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTgg < 2:4519121/93‑1 (MQ=255)
cGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGc < 1:442625/93‑1 (MQ=255)
cGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGc > 1:4146756/1‑93 (MQ=255)
gTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCa > 2:4055667/1‑93 (MQ=255)
ttGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCAc > 1:2526744/1‑93 (MQ=255)
ttGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCAc > 2:2645911/1‑93 (MQ=255)
tGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCAcc < 1:309428/93‑1 (MQ=255)
gACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCa > 2:3614713/1‑93 (MQ=255)
gACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCa > 2:3614711/1‑93 (MQ=255)
gACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCa > 2:4540212/1‑93 (MQ=255)
gACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCa < 1:3267851/93‑1 (MQ=255)
cTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAgg < 1:2208575/93‑1 (MQ=255)
tACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAggg < 1:3571108/93‑1 (MQ=255)
tACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAggg > 1:3865967/1‑93 (MQ=255)
tACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAggg < 2:45882/93‑1 (MQ=255)
cgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGACATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTa > 1:2903199/1‑93 (MQ=255)
gTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAg > 2:409065/1‑93 (MQ=255)
tttttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGAt < 1:2374533/93‑1 (MQ=255)
tttttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGAt > 2:2681100/1‑93 (MQ=255)
tttttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGAt < 1:27070/93‑1 (MQ=255)
ttttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATc < 2:2520859/93‑1 (MQ=255)
ttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGt < 1:1253361/93‑1 (MQ=255)
tAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTa < 2:1052774/93‑1 (MQ=255)
tAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTa < 2:3240628/93‑1 (MQ=255)
cAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTc < 1:888853/93‑1 (MQ=255)
aGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCa > 1:1295323/1‑93 (MQ=255)
gTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCaa > 2:1930630/1‑93 (MQ=255)
tCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAAt < 1:2128689/93‑1 (MQ=255)
ccATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAAtt > 1:1727024/1‑93 (MQ=255)
aTTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTcc > 1:4060073/1‑93 (MQ=255)
aTTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTcc < 1:1850363/93‑1 (MQ=255)
aTTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTcc > 1:4016859/1‑93 (MQ=255)
ttGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCt > 2:3368275/1‑93 (MQ=255)
gcgcAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCg < 2:1448170/93‑1 (MQ=255)
cgcAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGt < 2:2187790/93‑1 (MQ=255)
gcAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGta > 1:3991545/1‑92 (MQ=255)
gcAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTg > 2:3926607/1‑93 (MQ=255)
aaCCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGaa < 2:1303200/93‑1 (MQ=255)
aCCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAAc < 2:390241/93‑1 (MQ=255)
aCCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAAc < 2:901187/93‑1 (MQ=255)
aCCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAAc > 1:96785/1‑93 (MQ=255)
aCCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAAc < 2:3190137/93‑1 (MQ=255)
aCCCCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTTCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAAc < 2:901188/93‑1 (MQ=255)
ccGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAAcc < 2:1114343/93‑1 (MQ=255)
cGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCg < 2:238931/93‑1 (MQ=255)
gCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGTTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCga > 2:566022/1‑93 (MQ=255)
gCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCga < 2:348160/93‑1 (MQ=255)
gCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCga > 1:269076/1‑93 (MQ=255)
cccGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCgag > 2:1202415/1‑93 (MQ=255)
ccGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCgaga < 1:203380/93‑1 (MQ=255)
ccGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCgaga > 1:2505715/1‑93 (MQ=255)
|
GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG > NC_000913/1862975‑1863157
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGGT > NC_000913/1862972‑1863158
|
CACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGA < SRR4302544.3288445/94‑1 (MQ=60)
ACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGAC < SRR4302544.2799986/94‑1 (MQ=60)
GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCT < SRR4302544.4602682/94‑1 (MQ=60)
GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCT > SRR4302544.2868748/1‑94 (MQ=60)
GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCT < SRR4302544.2798509/94‑1 (MQ=60)
CCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTG < SRR4302544.2507437/94‑1 (MQ=60)
CCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTG > SRR4302544.1619624/1‑94 (MQ=60)
CCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTG < SRR4302544.4354255/94‑1 (MQ=60)
CAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGG > SRR4302544.1863910/1‑94 (MQ=60)
ACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGC > SRR4302544.1064290/1‑94 (MQ=60)
AATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTA > SRR4302544.1222063/1‑94 (MQ=60)
TACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAC < SRR4302544.3876912/94‑1 (MQ=60)
TACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAC < SRR4302544.609288/94‑1 (MQ=60)
ACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACG < SRR4302544.3073565/94‑1 (MQ=60)
ACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACG < SRR4302544.2345002/94‑1 (MQ=60)
CTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGG > SRR4302544.658890/1‑94 (MQ=60)
CTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTGTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGG > SRR4302544.658889/1‑94 (MQ=60)
CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTA < SRR4302544.961982/94‑1 (MQ=60)
CGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAA > SRR4302544.3090833/1‑94 (MQ=60)
CGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAA < SRR4302544.1184476/94‑1 (MQ=60)
TGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCAT > SRR4302544.3697334/1‑94 (MQ=60)
TGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCAT > SRR4302544.779219/1‑94 (MQ=60)
TTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCG < SRR4302544.2489512/94‑1 (MQ=60)
TGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGG < SRR4302544.3083560/94‑1 (MQ=60)
GTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGC > SRR4302544.2187905/1‑94 (MQ=60)
CATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTG < SRR4302544.3573716/94‑1 (MQ=60)
CATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTG < SRR4302544.4230678/94‑1 (MQ=60)
TGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCT < SRR4302544.2036994/94‑1 (MQ=60)
TGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCT > SRR4302544.408068/1‑94 (MQ=60)
TGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCT < SRR4302544.953962/94‑1 (MQ=60)
TGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCT > SRR4302544.408067/1‑94 (MQ=60)
GCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTT < SRR4302544.3268936/94‑1 (MQ=60)
CAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTG > SRR4302544.821389/1‑94 (MQ=60)
CAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTCTAAGCCATCACCGGCATCTGCTGTTG > SRR4302544.821387/1‑94 (MQ=60)
AATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGC > SRR4302544.2696082/1‑94 (MQ=60)
ATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCT > SRR4302544.3232499/1‑94 (MQ=60)
ATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCT < SRR4302544.1158837/94‑1 (MQ=60)
ATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCT < SRR4302544.799134/94‑1 (MQ=60)
TCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGC > SRR4302544.4187813/1‑94 (MQ=60)
CGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCA < SRR4302544.447058/94‑1 (MQ=60)
GTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCAC > SRR4302544.2551028/1‑94 (MQ=60)
TTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCCCCGGCATCTGCTGTTGCTGGCACC < SRR4302544.4761155/94‑1 (MQ=60)
TTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACC > SRR4302544.3792302/1‑94 (MQ=60)
TGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCA < SRR4302544.312648/94‑1 (MQ=60)
GACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAG < SRR4302544.3299036/94‑1 (MQ=60)
ACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGG < SRR4302544.3566085/94‑1 (MQ=60)
CTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGG < SRR4302544.2229361/94‑1 (MQ=60)
CTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGG > SRR4302544.3904354/1‑94 (MQ=60)
TACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGG < SRR4302544.3605348/94‑1 (MQ=60)
CCCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGA < SRR4302544.4018421/94‑1 (MQ=60)
CCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCTACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAG < SRR4302544.2932741/94‑1 (MQ=60)
GCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGACATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTA > SRR4302544.2931154/1‑94 (MQ=60)
TTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATC < SRR4302544.2397011/94‑1 (MQ=60)
TTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATC < SRR4302544.27329/94‑1 (MQ=60)
TTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGT > SRR4302544.1363021/1‑94 (MQ=60)
TTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTA < SRR4302544.3087165/94‑1 (MQ=60)
TTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTA < SRR4302544.1265695/94‑1 (MQ=60)
TAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTAC > SRR4302544.1954742/1‑94 (MQ=60)
CAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCA > SRR4302544.1308079/1‑94 (MQ=60)
CAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCA < SRR4302544.897662/94‑1 (MQ=60)
TCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATT > SRR4302544.1743963/1‑94 (MQ=60)
TCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATT < SRR4302544.2149086/94‑1 (MQ=60)
CATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCC > SRR4302544.4100507/1‑94 (MQ=60)
CATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCC > SRR4302544.4056814/1‑94 (MQ=60)
CATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCC > SRR4302544.907555/1‑94 (MQ=60)
ATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCT < SRR4302544.1868266/94‑1 (MQ=60)
CGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTA > SRR4302544.4031278/1‑94 (MQ=60)
CGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGGAGATCGTACTCAATTCCTCGTG > SRR4302544.1763913/1‑94 (MQ=60)
AACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAAC > SRR4302544.97670/1‑94 (MQ=60)
AACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAAC < SRR4302544.2154057/94‑1 (MQ=60)
AACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAAC > SRR4302544.2752778/1‑94 (MQ=60)
CGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGA > SRR4302544.271915/1‑94 (MQ=60)
CCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGA > SRR4302544.2529741/1‑94 (MQ=60)
CCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGAT < SRR4302544.205449/94‑1 (MQ=60)
GGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG > SRR4302544.4179918/1‑94 (MQ=60)
GACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG > SRR4302544.1423169/1‑94 (MQ=60)
ACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGGT < SRR4302544.2866607/94‑1 (MQ=60)
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CACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGGT > NC_000913/1862972‑1863158
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
