Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,865,007 |
A→G |
T26A (ACC→GCC) |
yeaG → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,865,007 | 0 | A | G | 97.4%
| 360.2
/ ‑0.1
| 117 | T26A (ACC→GCC) | yeaG | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (2/1); new base G (59/55); total (61/56) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.64e-01 |
Only 100 of 119 total aligned reads displayed.
AAAGGACGGCATACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTACCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGATACAGCC > NC_000913/1864917‑1865096
|
aaaGGACGGCATACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGcc > 1:1658717/1‑93 (MQ=255)
aaaCGACGGCATACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGcc < 1:3281501/93‑1 (MQ=255)
aGGACGGCATACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCAc < 1:4609580/93‑1 (MQ=255)
aCGGCATACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTg < 2:3288234/93‑1 (MQ=255)
ggaTACCATGAATATATTCGATCACTATCGCTAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCg < 1:732918/91‑1 (MQ=255)
gCATACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCg > 1:2042642/1‑93 (MQ=255)
aTACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGc > 2:2057924/1‑93 (MQ=255)
aTACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGc > 1:3101451/1‑93 (MQ=255)
aTACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGc > 2:602416/1‑93 (MQ=255)
tACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCa > 1:4210986/1‑93 (MQ=255)
tACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCa > 2:1123976/1‑93 (MQ=255)
ccATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAg < 2:567453/93‑1 (MQ=255)
caagAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGa < 1:3657841/90‑1 (MQ=255)
cATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGa > 1:726723/1‑93 (MQ=255)
cATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTACCACTTGTCGGCAAGa > 2:4039188/1‑93 (MQ=255)
cATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGGTTCTTGCCACTTGTCGGCAAGa > 2:4142559/1‑93 (MQ=255)
cATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGCTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGa > 1:1396597/1‑93 (MQ=255)
aTGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGAt < 1:3298222/93‑1 (MQ=255)
aTGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGAt < 2:2430988/93‑1 (MQ=255)
tGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATc > 2:604498/1‑93 (MQ=255)
gAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCg > 1:4078406/1‑93 (MQ=255)
gAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCg > 2:777017/1‑93 (MQ=255)
gAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGCTCACACTGCAGGAGCTTCTTGCCACTTGTCGGCAAGATCg > 1:70861/1‑93 (MQ=255)
tatatTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAg < 1:3201107/93‑1 (MQ=255)
atatTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGt < 1:1925815/93‑1 (MQ=255)
tatTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTg < 2:1570268/93‑1 (MQ=255)
tatTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTg < 2:648380/93‑1 (MQ=255)
ttCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCt > 1:997013/1‑93 (MQ=255)
tCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCtt > 2:639169/1‑93 (MQ=255)
cGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTa < 1:2800330/93‑1 (MQ=255)
cGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTa < 2:2966160/93‑1 (MQ=255)
cGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTa > 1:1695170/1‑93 (MQ=255)
gATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTAt > 2:363426/1‑93 (MQ=255)
aTCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATg > 2:787941/1‑93 (MQ=255)
tCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGc > 2:331161/1‑93 (MQ=255)
tCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGc > 2:1311232/1‑93 (MQ=255)
cACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCCCACTGCAGGAGCTTCTTGCCACTTGTCGGCAAGATCGCAGCGCTTATGcc > 2:108740/1‑93 (MQ=255)
cACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGcc > 1:1717938/1‑93 (MQ=255)
aCTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCa > 1:2045593/1‑93 (MQ=255)
cTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCaa < 2:2144012/93‑1 (MQ=255)
cTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCaa < 1:995752/93‑1 (MQ=255)
aTCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAAcg > 2:304189/1‑93 (MQ=255)
aTCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAAcg > 1:3026314/1‑93 (MQ=255)
tCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAAcgc > 2:4574563/1‑93 (MQ=255)
tCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAAcgc > 2:4574564/1‑93 (MQ=255)
tCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAAcgc < 1:374031/93‑1 (MQ=255)
cGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAAcgcg < 1:2467371/93‑1 (MQ=255)
gCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCgg > 2:2734454/1‑93 (MQ=255)
gCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTACCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCgg > 2:1563664/1‑93 (MQ=255)
gCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGa < 1:1143162/93‑1 (MQ=255)
cGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAg > 2:2379987/1‑93 (MQ=255)
gATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGc < 1:3583939/93‑1 (MQ=255)
gATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGc > 2:4152589/1‑93 (MQ=255)
gATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGc > 1:1285742/1‑93 (MQ=255)
atatGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCg < 1:546021/93‑1 (MQ=255)
atatGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCg > 1:4596837/1‑93 (MQ=255)
atatGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCg > 1:3618932/1‑93 (MQ=255)
atGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGc < 2:4389556/93‑1 (MQ=255)
tGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCt < 2:3216931/93‑1 (MQ=255)
tGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCt > 1:927468/1‑93 (MQ=255)
tGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCt > 1:346423/1‑93 (MQ=255)
aaGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTAt > 1:2799797/1‑93 (MQ=255)
accTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTAtt < 1:4615394/91‑1 (MQ=255)
aGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTAtt > 2:2973087/1‑93 (MQ=255)
aGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTAtt < 2:1803811/93‑1 (MQ=255)
aGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTAtt < 1:2692123/93‑1 (MQ=255)
tGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGAt < 1:101342/93‑1 (MQ=255)
cAAGTACGTAGAGTACACACTTCAGGAGTTTCTTGCTTCCTGCCGGCAAGAACGTAGTGCCTTTGCCAACGCGGCTGAGCGGCTATTGATgtc > 2:4332721/1‑91 (MQ=255)
aaGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCt < 2:2442366/93‑1 (MQ=255)
aaGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCt < 1:1440742/93‑1 (MQ=255)
aaGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCt > 1:283242/1‑93 (MQ=255)
aaGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCt < 1:305468/93‑1 (MQ=255)
aGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTa < 2:1343357/93‑1 (MQ=255)
gACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATc < 2:2143521/93‑1 (MQ=255)
cGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCgg < 1:4146346/93‑1 (MQ=255)
cGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCgg < 1:4462030/93‑1 (MQ=255)
gAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGt > 1:1985164/1‑93 (MQ=255)
agTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGc < 1:322881/93‑1 (MQ=255)
cacaCTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGt > 1:4059906/1‑93 (MQ=255)
cacaCTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGt < 1:2479723/93‑1 (MQ=255)
acacTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTc > 2:204692/1‑93 (MQ=255)
cacTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCa < 1:3042379/93‑1 (MQ=255)
acTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCAt < 1:4203020/93‑1 (MQ=255)
acTGCAGGAGTTTCTTACCGCTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCAt < 1:3826792/93‑1 (MQ=255)
tGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATgg < 1:1398310/93‑1 (MQ=255)
tGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATgg < 1:1903727/93‑1 (MQ=255)
tGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATgg < 1:1620896/93‑1 (MQ=255)
gCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGt < 2:3313815/93‑1 (MQ=255)
gCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGt < 1:1601310/93‑1 (MQ=255)
ggAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGa > 1:4144780/1‑93 (MQ=255)
gAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGAt > 1:3092432/1‑93 (MQ=255)
aGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGATa < 2:1368610/93‑1 (MQ=255)
aGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGATa > 2:3710014/1‑93 (MQ=255)
gTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGATAc < 2:1385802/93‑1 (MQ=255)
gTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGATAc > 2:675859/1‑93 (MQ=255)
tttCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGATACa < 2:2998114/93‑1 (MQ=255)
tttCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGATACa < 2:2998117/93‑1 (MQ=255)
ttCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGATACAg > 1:3287227/1‑93 (MQ=255)
ttCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGATACAg < 2:2540705/93‑1 (MQ=255)
cTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGATACAGcc > 1:3884269/1‑93 (MQ=255)
|
AAAGGACGGCATACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTACCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGATACAGCC > NC_000913/1864917‑1865096
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACGAAAGGACGGCATACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTACCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGATACAGCCC > NC_000913/1864914‑1865097
|
ACGAAAGGACGGCATACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTG < SRR4302544.4560795/94‑1 (MQ=60)
GAAAGGACGGCATACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCC > SRR4302544.1675055/1‑94 (MQ=60)
AAACGACGGCATACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCA < SRR4302544.3312769/94‑1 (MQ=60)
AGGACGGCATACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACT < SRR4302544.4655365/94‑1 (MQ=60)
GGCATACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCG > SRR4302544.2062346/1‑94 (MQ=60)
GGATACCATGAATATATTCGATCACTATCGCTAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGG < SRR4302544.740085/94‑1 (MQ=60)
CATACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGC > SRR4302544.3130976/1‑94 (MQ=60)
ATACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCA > SRR4302544.4253363/1‑94 (MQ=60)
ACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAG > SRR4302544.1471309/1‑94 (MQ=60)
CCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGA > SRR4302544.733855/1‑94 (MQ=60)
CCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGCTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGA > SRR4302544.1410519/1‑94 (MQ=60)
CAAGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGAT < SRR4302544.3694329/94‑1 (MQ=60)
ATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATC < SRR4302544.3329636/94‑1 (MQ=60)
TGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCG > SRR4302544.4118989/1‑94 (MQ=60)
TGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGCTCACACTGCAGGAGCTTCTTGCCACTTGTCGGCAAGATCG > SRR4302544.71551/1‑94 (MQ=60)
TATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGT < SRR4302544.3231614/94‑1 (MQ=60)
ATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTG > SRR4302544.2915027/1‑94 (MQ=60)
ATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTG < SRR4302544.1944446/94‑1 (MQ=60)
ATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCT > SRR4302544.1006876/1‑94 (MQ=60)
TCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTA > SRR4302544.1711895/1‑94 (MQ=60)
CGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTAT < SRR4302544.2827313/94‑1 (MQ=60)
TCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCC > SRR4302544.1734827/1‑94 (MQ=60)
CACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCA > SRR4302544.2065309/1‑94 (MQ=60)
CTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAAC < SRR4302544.1005601/94‑1 (MQ=60)
TATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACG > SRR4302544.3055308/1‑94 (MQ=60)
TCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCG < SRR4302544.377853/94‑1 (MQ=60)
CGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGG < SRR4302544.2490940/94‑1 (MQ=60)
AGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGA > SRR4302544.2241536/1‑94 (MQ=60)
GCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAG < SRR4302544.1154527/94‑1 (MQ=60)
GCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAG < SRR4302544.1770330/94‑1 (MQ=60)
CGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGC > SRR4302544.823016/1‑94 (MQ=60)
CGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGC > SRR4302544.1298406/1‑94 (MQ=60)
GATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCG > SRR4302544.4642551/1‑94 (MQ=60)
GATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCG > SRR4302544.3654990/1‑94 (MQ=60)
GATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCG < SRR4302544.3618331/94‑1 (MQ=60)
ATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGG < SRR4302544.551384/94‑1 (MQ=60)
ATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCAG > SRR4302544.3197055/1‑94 (MQ=60)
ATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCT > SRR4302544.936607/1‑94 (MQ=60)
ATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCT > SRR4302544.349988/1‑94 (MQ=60)
GAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTAT > SRR4302544.2826774/1‑94 (MQ=60)
AGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTG < SRR4302544.2717952/94‑1 (MQ=60)
AGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTG < SRR4302544.4661213/94‑1 (MQ=60)
ACCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTG < SRR4302544.4661214/94‑1 (MQ=60)
TGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATG < SRR4302544.102269/94‑1 (MQ=60)
CAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCT > SRR4302544.286196/1‑94 (MQ=60)
AAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTA < SRR4302544.1455078/94‑1 (MQ=60)
AAGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTA < SRR4302544.308637/94‑1 (MQ=60)
AGGACGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTAT > SRR4302544.3791023/1‑94 (MQ=60)
CGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGT < SRR4302544.4187397/94‑1 (MQ=60)
CGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGT > SRR4302544.2004439/1‑94 (MQ=60)
CGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGT < SRR4302544.4506938/94‑1 (MQ=60)
CGAAGAGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGT < SRR4302544.4187396/94‑1 (MQ=60)
AGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCC < SRR4302544.3429395/94‑1 (MQ=60)
AGTTCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCC < SRR4302544.326236/94‑1 (MQ=60)
TCACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGT > SRR4302544.4100340/1‑94 (MQ=60)
CACACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTC < SRR4302544.2503454/94‑1 (MQ=60)
CACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCAT < SRR4302544.3071485/94‑1 (MQ=60)
ACTGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATG < SRR4302544.4245086/94‑1 (MQ=60)
ACTGCAGGAGTTTCTTACCGCTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATG < SRR4302544.3864743/94‑1 (MQ=60)
TGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGT < SRR4302544.1412248/94‑1 (MQ=60)
TGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGT < SRR4302544.1922126/94‑1 (MQ=60)
TGCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGT < SRR4302544.1636861/94‑1 (MQ=60)
GCAGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTC < SRR4302544.1617100/94‑1 (MQ=60)
AGGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGA > SRR4302544.4185812/1‑94 (MQ=60)
GGAGTTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGAT > SRR4302544.3121889/1‑94 (MQ=60)
TTTCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGATACAG > SRR4302544.3318547/1‑94 (MQ=60)
TCTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGATACAGCC > SRR4302544.3922848/1‑94 (MQ=60)
CTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGATACAGCCC > SRR4302544.1295875/1‑94 (MQ=60)
CTTGCCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGATACAGCCC > SRR4302544.1295876/1‑94 (MQ=60)
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ACGAAAGGACGGCATACCATGAATATATTCGATCACTATCGCCAGCGATATGAAGCTGCCAAGGACGAAGAGTTCACACTGCAGGAGTTTCTTACCACTTGTCGGCAAGATCGCAGTGCTTATGCCAACGCGGCTGAGCGGCTATTGATGGCTATCGGTGAGCCTGTCATGGTCGATACAGCCC > NC_000913/1864914‑1865097
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
