Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1357 179.3 9500450 96.1% 9129932 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,924,185 A→G G14G (GGA→GGG)  b1844 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,924,1850AG96.8% 369.9 / 1.0 123G14G (GGA→GGG) b1844hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (1/3);  new base G (68/51);  total (69/54)
Fisher's exact test for biased strand distribution p-value = 3.19e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.30e-01

Only 100 of 134 total aligned reads displayed.

AAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTA  >  NC_000913/1924095‑1924273
                                                                                          |                                                                                        
aaGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCagggggg                                                                                        <  2:1664295/93‑1 (MQ=255)
aaGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCagggggg                                                                                        <  2:1236193/93‑1 (MQ=255)
aaGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCagggagg                                                                                        >  1:4031916/1‑93 (MQ=255)
 aGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCaggggggg                                                                                       <  1:1089931/93‑1 (MQ=255)
 aGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCaggggggg                                                                                       >  1:2882696/1‑93 (MQ=255)
  ggCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAggggggga                                                                                      >  2:461964/1‑93 (MQ=255)
   gCGATATCATTCCATTACGCTAGGCTTTTGCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGAt                                                                                     <  2:4456223/93‑1 (MQ=255)
    cGATATCATTCCATTACGCTAGGCTTTTTCGGCCTAGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATc                                                                                    <  2:3909902/93‑1 (MQ=255)
     gATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCg                                                                                   >  1:1436004/1‑93 (MQ=255)
      atatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGt                                                                                  >  1:1287925/1‑93 (MQ=255)
      atatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGt                                                                                  >  1:3277942/1‑93 (MQ=255)
      atatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGt                                                                                  >  1:1925652/1‑93 (MQ=255)
       tatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGtt                                                                                 >  1:2640742/1‑93 (MQ=255)
           aTTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGGTCGTTgaga                                                                             >  2:2547095/1‑93 (MQ=255)
           aTTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTgaga                                                                             <  2:3308234/93‑1 (MQ=255)
           aTTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTgaga                                                                             <  1:827970/93‑1 (MQ=255)
            ttCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGAt                                                                            <  1:3016406/93‑1 (MQ=255)
                aTTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGcc                                                                        >  1:3905075/1‑93 (MQ=255)
                aTTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGcc                                                                        <  1:134711/93‑1 (MQ=255)
                 ttgcGCTAGGCTTGTTCGGCCTGGAGCATGCCTTGTTGCGCAGTATCGATCCAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCct                                                                       <  1:343875/90‑1 (MQ=255)
                  tACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCctc                                                                      <  1:2529167/93‑1 (MQ=255)
                     gCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGt                                                                   >  2:3366914/1‑93 (MQ=255)
                     gCTAGGCTTGTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGt                                                                   <  1:542372/93‑1 (MQ=255)
                      cTAGGCTTTTTCGGCCTGGAGCATTCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGtt                                                                  <  2:483921/93‑1 (MQ=255)
                        aGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGa                                                                <  2:3576137/93‑1 (MQ=255)
                        aGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGa                                                                >  1:4257594/1‑93 (MQ=255)
                        aGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGa                                                                <  1:1576825/93‑1 (MQ=255)
                         ggCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGAt                                                               <  1:623320/93‑1 (MQ=255)
                         ggCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGAt                                                               <  2:3618825/93‑1 (MQ=255)
                         ggCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGAt                                                               >  1:2233136/1‑93 (MQ=255)
                         ggCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGAt                                                               >  1:230634/1‑93 (MQ=255)
                         ggCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGCTGAt                                                               >  2:3064888/1‑93 (MQ=255)
                          gCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATg                                                              <  1:3832569/93‑1 (MQ=255)
                            tttttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTc                                                            <  1:4434786/93‑1 (MQ=255)
                            tttttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTc                                                            >  2:332848/1‑93 (MQ=255)
                            tttttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTc                                                            >  2:1828229/1‑93 (MQ=255)
                               ttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCAtt                                                         <  1:2584081/93‑1 (MQ=255)
                               ttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCAtt                                                         <  2:2903321/93‑1 (MQ=255)
                                tCGTCCTTGAGCATGCCATGTTGCGCATTATCGATACAGAAAGCTGCGGTTTGCAGGTATGGATCTTTGAGATTGCCTCTGTTTATGTCATTg                                                        <  2:4334376/93‑1 (MQ=255)
                                  ggCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGAc                                                      <  1:4615282/93‑1 (MQ=255)
                                   gCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACg                                                     <  1:1617508/93‑1 (MQ=255)
                                     cTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGa                                                   >  1:1323806/1‑93 (MQ=255)
                                     cTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGa                                                   >  1:556630/1‑93 (MQ=255)
                                      tGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGaa                                                  >  2:2795498/1‑93 (MQ=255)
                                       ggAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGaaa                                                 >  2:4725725/1‑93 (MQ=255)
                                       ggAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGaaa                                                 >  1:2286098/1‑93 (MQ=255)
                                         aGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGaaaaa                                               >  2:1044626/1‑93 (MQ=255)
                                         aGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGaaaaa                                               >  1:1435621/1‑93 (MQ=255)
                                          gCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAACAAt                                              >  2:1988488/1‑93 (MQ=255)
                                          gCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAAt                                              >  2:2858353/1‑93 (MQ=255)
                                          gCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAAt                                              >  1:1548716/1‑93 (MQ=255)
                                           catgccatgcTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAACAATc                                             >  2:1787110/1‑93 (MQ=255)
                                           cATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATc                                             <  2:3047656/93‑1 (MQ=255)
                                           cATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATc                                             <  1:2865876/93‑1 (MQ=255)
                                            aTGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCg                                            >  1:1806105/1‑93 (MQ=255)
                                            aTGCCATGTTGCGCATTATCGATACAGAAACCTGCGGGTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGCAAAATCg                                            >  2:1937900/1‑93 (MQ=255)
                                             tGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGt                                           >  2:784505/1‑93 (MQ=255)
                                             tGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGt                                           >  1:3740968/1‑93 (MQ=255)
                                                cATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCaa                                        >  1:45218/1‑93 (MQ=255)
                                                cATGTTGCGCATTATCGATACAGAAACCTGCGGTGTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCaa                                        >  2:2978393/1‑93 (MQ=255)
                                                cATGTTGCGCATTATCGATACAGAAACCTGCGGGTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCaa                                        >  1:2860181/1‑93 (MQ=255)
                                                cATGTTGCGCATTATCGATACAGAAAACTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCATCaa                                        >  1:558257/1‑93 (MQ=255)
                                                 aTGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAc                                       >  1:2625770/1‑93 (MQ=255)
                                                 aTGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAc                                       >  1:2625896/1‑93 (MQ=255)
                                                   gTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAccc                                     <  2:1942445/93‑1 (MQ=255)
                                                    ttGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAcccc                                    <  1:833734/93‑1 (MQ=255)
                                                     tGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCa                                   <  1:360512/93‑1 (MQ=255)
                                                     tGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCa                                   <  2:2247963/93‑1 (MQ=255)
                                                      gcgcATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCAt                                  <  2:762459/93‑1 (MQ=255)
                                                        gcATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGa                                >  2:2774103/1‑93 (MQ=255)
                                                         cATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAg                               >  1:154262/1‑93 (MQ=255)
                                                         cATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAACCCATgcg                               >  2:1800721/1‑91 (MQ=255)
                                                           ttATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGcc                             <  2:2915836/93‑1 (MQ=255)
                                                             aTCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCAAc                           >  1:630827/1‑93 (MQ=255)
                                                              tCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCAcc                          <  1:3378042/93‑1 (MQ=255)
                                                              tCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCAcc                          >  2:1698971/1‑93 (MQ=255)
                                                              tCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCAcc                          <  2:2054491/93‑1 (MQ=255)
                                                                gATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTg                        <  1:3483758/93‑1 (MQ=255)
                                                                gATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTg                        >  1:2140558/1‑93 (MQ=255)
                                                                  tACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGt                      <  1:4344456/93‑1 (MQ=255)
                                                                  tACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGt                      <  2:2282532/93‑1 (MQ=255)
                                                                   aCAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTTATGTCATTGACGGAAAAATAGTCAACACCATGAGCCACACGGTg                     >  2:4616993/1‑93 (MQ=255)
                                                                      gAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTgcgc                  >  2:4093366/1‑93 (MQ=255)
                                                                       aaaCCTGCGGTGTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGcc                 <  1:1819246/93‑1 (MQ=255)
                                                                        aaCCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGccc                <  1:2045285/93‑1 (MQ=255)
                                                                        aaCCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGccc                >  2:4010628/1‑93 (MQ=255)
                                                                          ccTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACTCCATGAGCCACCTGGTGCGCCCCg              <  2:4555648/93‑1 (MQ=255)
                                                                           cTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGa             >  2:4680276/1‑93 (MQ=255)
                                                                            tGCGGTTTGCAGGGGGGGCTCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCACCGAt            >  2:2266014/1‑93 (MQ=255)
                                                                            tGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGAt            >  2:1024045/1‑93 (MQ=255)
                                                                            tGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTAAACCCCATGAGCCACCTGGTGCGCCCCGAt            >  2:4512940/1‑93 (MQ=255)
                                                                             gCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATc           <  2:3648157/93‑1 (MQ=255)
                                                                                gTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTc        >  1:1029290/1‑93 (MQ=255)
                                                                                 tttGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTcc       >  2:20574/1‑93 (MQ=255)
                                                                                   tGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTa     <  1:800148/93‑1 (MQ=255)
                                                                                     cAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTAtt   <  2:1836307/93‑1 (MQ=255)
                                                                                     cAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTAtt   <  1:2532203/93‑1 (MQ=255)
                                                                                      agggggggATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTa  >  2:1703340/1‑93 (MQ=255)
                                                                                      agggggggATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTa  >  1:1434787/1‑93 (MQ=255)
                                                                                      agggggggATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTa  >  1:1056744/1‑93 (MQ=255)
                                                                                          |                                                                                        
AAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTA  >  NC_000913/1924095‑1924273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAGTCC  >  NC_000913/1924094‑1924277
                                                                                           |                                                                                            
CAAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGG                                                                                            >  SRR4302544.4072078/1‑94 (MQ=60)
 AAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGG                                                                                           >  SRR4302544.2910505/1‑94 (MQ=60)
 AAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGG                                                                                           <  SRR4302544.1867450/94‑1 (MQ=60)
  AGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGA                                                                                          <  SRR4302544.1100771/94‑1 (MQ=60)
   GGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGAT                                                                                         <  SRR4302544.626428/94‑1 (MQ=60)
     CGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCG                                                                                       >  SRR4302544.1450299/1‑94 (MQ=60)
      GATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGT                                                                                      >  SRR4302544.1300608/1‑94 (MQ=60)
      GATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGT                                                                                      >  SRR4302544.1944282/1‑94 (MQ=60)
      GATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGT                                                                                      >  SRR4302544.3309178/1‑94 (MQ=60)
       ATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTT                                                                                     <  SRR4302544.4677943/94‑1 (MQ=60)
       ATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTT                                                                                     >  SRR4302544.2666058/1‑94 (MQ=60)
          TCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAG                                                                                  <  SRR4302544.1276360/94‑1 (MQ=60)
           CATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGA                                                                                 >  SRR4302544.3988328/1‑94 (MQ=60)
           CATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGA                                                                                 >  SRR4302544.2633612/1‑94 (MQ=60)
            ATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGAT                                                                                <  SRR4302544.836104/94‑1 (MQ=60)
            ATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGAT                                                                                <  SRR4302544.2218062/94‑1 (MQ=60)
             TTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATT                                                                               <  SRR4302544.3045325/94‑1 (MQ=60)
             TTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATT                                                                               <  SRR4302544.3767201/94‑1 (MQ=60)
                CATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCC                                                                            >  SRR4302544.3943874/1‑94 (MQ=60)
                 ATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCT                                                                           <  SRR4302544.135976/94‑1 (MQ=60)
                  TTGCGCTAGGCTTGTTCGGCCTGGAGCATGCCTTGTTGCGCAGTATCGATCCAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTC                                                                          <  SRR4302544.347421/94‑1 (MQ=60)
                   TACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCT                                                                         <  SRR4302544.2553469/94‑1 (MQ=60)
                      GCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTT                                                                      >  SRR4302544.2964213/1‑94 (MQ=60)
                      GCTAGGCTTGTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTT                                                                      <  SRR4302544.547710/94‑1 (MQ=60)
                        TAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGA                                                                    >  SRR4302544.4301003/1‑94 (MQ=60)
                         AGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGAT                                                                   >  SRR4302544.2254140/1‑94 (MQ=60)
                         AGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGAT                                                                   >  SRR4302544.233036/1‑94 (MQ=60)
                         AGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGAT                                                                   <  SRR4302544.1592413/94‑1 (MQ=60)
                         AGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGAT                                                                   <  SRR4302544.1592412/94‑1 (MQ=60)
                          GGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATG                                                                  <  SRR4302544.629440/94‑1 (MQ=60)
                           GCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGT                                                                 <  SRR4302544.3870566/94‑1 (MQ=60)
                             TTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCA                                                               <  SRR4302544.4479520/94‑1 (MQ=60)
                                TTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTG                                                            <  SRR4302544.2608926/94‑1 (MQ=60)
                                   GGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACG                                                         <  SRR4302544.4661099/94‑1 (MQ=60)
                                    GCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGG                                                        <  SRR4302544.1633452/94‑1 (MQ=60)
                                     CCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGA                                                       >  SRR4302544.562073/1‑94 (MQ=60)
                                     CCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGA                                                       >  SRR4302544.1336827/1‑94 (MQ=60)
                                       TGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAA                                                     >  SRR4302544.2307647/1‑94 (MQ=60)
                                         GAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAA                                                   >  SRR4302544.1449911/1‑94 (MQ=60)
                                          AGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAAT                                                  >  SRR4302544.1564138/1‑94 (MQ=60)
                                           GCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATC                                                 <  SRR4302544.3469478/94‑1 (MQ=60)
                                            CATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCG                                                <  SRR4302544.2893542/94‑1 (MQ=60)
                                            CATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCG                                                >  SRR4302544.1823757/1‑94 (MQ=60)
                                             ATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGT                                               >  SRR4302544.3778143/1‑94 (MQ=60)
                                               GCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCA                                             >  SRR4302544.2499377/1‑94 (MQ=60)
                                                CCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAA                                            >  SRR4302544.45669/1‑94 (MQ=60)
                                                CCATGTTGCGCATTATCGATACAGAAACCTGCGGGTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAA                                            >  SRR4302544.2887789/1‑94 (MQ=60)
                                                CCATGTTGCGCATTATCGATACAGAAAACTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCATCAA                                            >  SRR4302544.563716/1‑94 (MQ=60)
                                                 CATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAC                                           >  SRR4302544.2650946/1‑94 (MQ=60)
                                                 CATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAC                                           >  SRR4302544.2651072/1‑94 (MQ=60)
                                                     TTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCA                                       <  SRR4302544.841943/94‑1 (MQ=60)
                                                      TGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCAT                                      <  SRR4302544.364201/94‑1 (MQ=60)
                                                         GCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAG                                   >  SRR4302544.155764/1‑94 (MQ=60)
                                                          CATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGC                                  >  SRR4302544.1406305/1‑94 (MQ=60)
                                                             TATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCAAC                               >  SRR4302544.637038/1‑94 (MQ=60)
                                                               TCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCT                             <  SRR4302544.4416991/94‑1 (MQ=60)
                                                               TCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCT                             <  SRR4302544.3410287/94‑1 (MQ=60)
                                                                CGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTG                            >  SRR4302544.2160990/1‑94 (MQ=60)
                                                                 GATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGG                           <  SRR4302544.3516962/94‑1 (MQ=60)
                                                                  ATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGT                          >  SRR4302544.1551265/1‑94 (MQ=60)
                                                                   TACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTG                         <  SRR4302544.4388630/94‑1 (MQ=60)
                                                                   TACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGACATTGCCTCTGTTGATGTCATTGCCGGAAAAATCGTCAACCCCATGAGCCACCTGGTG                         <  SRR4302544.268674/94‑1 (MQ=60)
                                                                   GACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTG                         <  SRR4302544.962027/94‑1 (MQ=60)
                                                                        AAACCTGCGGTGTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCC                    <  SRR4302544.1836987/94‑1 (MQ=60)
                                                                         AACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCC                   <  SRR4302544.2065001/94‑1 (MQ=60)
                                                                          ACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCG                  <  SRR4302544.76954/94‑1 (MQ=60)
                                                                                GGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTC            >  SRR4302544.1039548/1‑94 (MQ=60)
                                                                                    TGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTAT        <  SRR4302544.807909/94‑1 (MQ=60)
                                                                                      CAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTA      <  SRR4302544.2556531/94‑1 (MQ=60)
                                                                                      CAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTA      >  SRR4302544.1449066/1‑94 (MQ=60)
                                                                                      CAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTA      >  SRR4302544.1067235/1‑94 (MQ=60)
                                                                                          GGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAGTCC  >  SRR4302544.3907474/1‑94 (MQ=60)
                                                                                           |                                                                                            
CAAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAGTCC  >  NC_000913/1924094‑1924277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑