Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,924,185 A→G G14G (GGA→GGG)  b1844 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,924,1850AG99.5% 702.6 / NA 217G14G (GGA→GGG) b1844hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (121/95);  minor base T (0/1);  total (121/96)
Fisher's exact test for biased strand distribution p-value = 4.42e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 239 total aligned reads displayed.

AAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAG  >  NC_000913/1924095‑1924274
                                                                                          |                                                                                         
 aGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCaggggggg                                                                                        >  2:5179149/1‑93 (MQ=255)
 aGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCaggggggg                                                                                        >  1:1675019/1‑93 (MQ=255)
 aGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCaggggggg                                                                                        >  1:2613550/1‑93 (MQ=255)
 aGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCaggggggg                                                                                        >  2:19610/1‑93 (MQ=255)
  ggCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAggggggga                                                                                       >  1:5001267/1‑93 (MQ=255)
   gCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGAt                                                                                      <  2:577881/93‑1 (MQ=255)
     gATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCg                                                                                    <  2:1190038/93‑1 (MQ=255)
      atatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGt                                                                                   >  1:6542713/1‑93 (MQ=255)
      atatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGt                                                                                   >  1:1488182/1‑93 (MQ=255)
      atatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGt                                                                                   <  2:159136/93‑1 (MQ=255)
       tatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGtt                                                                                  >  2:4728400/1‑93 (MQ=255)
       tatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGtt                                                                                  <  2:4534427/93‑1 (MQ=255)
        atCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTg                                                                                 <  1:3953905/93‑1 (MQ=255)
        atCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTg                                                                                 <  1:6125888/93‑1 (MQ=255)
        atCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTg                                                                                 <  1:4120318/93‑1 (MQ=255)
         tCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTga                                                                                >  2:3930398/1‑93 (MQ=255)
         tCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTga                                                                                >  2:1163255/1‑93 (MQ=255)
           aTTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGGTCGTTgaga                                                                              >  2:4127716/1‑93 (MQ=255)
           aTTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTgaga                                                                              >  1:1037036/1‑93 (MQ=255)
              ccATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTg                                                                           <  2:300300/93‑1 (MQ=255)
              ccATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTg                                                                           >  1:4510242/1‑93 (MQ=255)
               cATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAACCCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGc                                                                          <  1:1282215/93‑1 (MQ=255)
               cATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGc                                                                          >  1:1134984/1‑93 (MQ=255)
                aTTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGcc                                                                         >  1:3461980/1‑93 (MQ=255)
                aTTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGcc                                                                         <  2:5277103/93‑1 (MQ=255)
                 ttACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCct                                                                        >  1:1220378/1‑93 (MQ=255)
                 ttACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCct                                                                        >  1:463087/1‑93 (MQ=255)
                 ttACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTGGAGATTGCct                                                                        >  2:3419290/1‑93 (MQ=255)
                  tACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCctc                                                                       <  1:6678565/93‑1 (MQ=255)
                   aCGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCctct                                                                      >  1:5982149/1‑93 (MQ=255)
                   aCGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCctct                                                                      <  2:2447501/93‑1 (MQ=255)
                     gCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGt                                                                    >  1:859152/1‑93 (MQ=255)
                     gCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGt                                                                    <  1:286300/93‑1 (MQ=255)
                     gCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGt                                                                    <  2:6252918/93‑1 (MQ=255)
                      cTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGtt                                                                   <  1:13449/93‑1 (MQ=255)
                       tAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTg                                                                  <  1:2436878/93‑1 (MQ=255)
                        aGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGa                                                                 <  2:2840745/93‑1 (MQ=255)
                         ggCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGAt                                                                >  2:6081987/1‑93 (MQ=255)
                           cTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGt                                                              <  2:2562748/93‑1 (MQ=255)
                           cTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGt                                                              <  1:3286593/93‑1 (MQ=255)
                           cTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGt                                                              <  2:565548/93‑1 (MQ=255)
                            tttttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTc                                                             >  2:5117887/1‑93 (MQ=255)
                            tttttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAAAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTc                                                             >  2:4354485/1‑93 (MQ=255)
                             ttttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCa                                                            >  1:5659829/1‑93 (MQ=255)
                               ttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCAtt                                                          >  2:727258/1‑93 (MQ=255)
                                 cGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGa                                                        <  2:152164/93‑1 (MQ=255)
                                 cGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGa                                                        >  1:3553184/1‑93 (MQ=255)
                                  ggCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGAc                                                       <  2:806585/93‑1 (MQ=255)
                                     cTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGa                                                    >  1:727719/1‑93 (MQ=255)
                                     cTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGGTGAGATTGACTCTGTTGATGTCATTGACGGa                                                    >  1:593474/1‑93 (MQ=255)
                                      tGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGaa                                                   <  2:3497118/93‑1 (MQ=255)
                                      tGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGaa                                                   >  2:6040018/1‑93 (MQ=255)
                                      tGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGaa                                                   >  2:32402/1‑93 (MQ=255)
                                       ggAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGaaa                                                  >  2:2359434/1‑93 (MQ=255)
                                         aGCATGCCATGTTGCGCATTATCGATACAGAAGCCTGCGGTTTGCAGTGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGaaaaa                                                <  1:5577426/93‑1 (MQ=255)
                                         aGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGaaaaa                                                <  2:494852/93‑1 (MQ=255)
                                         aGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGaaaaa                                                >  1:3437083/1‑93 (MQ=255)
                                          gCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAAt                                               >  1:680827/1‑93 (MQ=255)
                                           cATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATc                                              <  1:2232388/93‑1 (MQ=255)
                                            aTGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCg                                             >  1:4158627/1‑93 (MQ=255)
                                             tGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGt                                            >  2:6582044/1‑93 (MQ=255)
                                             tGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGt                                            >  2:1885667/1‑93 (MQ=255)
                                             tGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGt                                            >  1:5098800/1‑93 (MQ=255)
                                              gCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTc                                           >  1:4879918/1‑93 (MQ=255)
                                              gCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTc                                           >  2:6470287/1‑93 (MQ=255)
                                               ccATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCa                                          >  1:2483015/1‑93 (MQ=255)
                                               ccATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCa                                          >  2:2191382/1‑93 (MQ=255)
                                                cATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCaa                                         >  2:1073626/1‑93 (MQ=255)
                                                 aTGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAc                                        <  1:2051799/93‑1 (MQ=255)
                                                 aTGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAc                                        <  2:5386117/93‑1 (MQ=255)
                                                 aTGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAc                                        >  1:2158536/1‑93 (MQ=255)
                                                  tGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAcc                                       >  2:4084431/1‑93 (MQ=255)
                                                        gcATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGa                                 >  2:5226843/1‑93 (MQ=255)
                                                        gcATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGa                                 >  1:5254101/1‑93 (MQ=255)
                                                         cATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAg                                <  2:4319963/93‑1 (MQ=255)
                                                              tCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCAcc                           >  1:3703988/1‑93 (MQ=255)
                                                              tCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCAcc                           <  1:2968143/93‑1 (MQ=255)
                                                              tCGATACAGAAACCTGCGGTTTGCAGGGGGCGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAGCCCCATGAGCCAcc                           <  2:2060129/93‑1 (MQ=255)
                                                                gATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTg                         >  2:317033/1‑93 (MQ=255)
                                                                gATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTg                         >  1:2576457/1‑93 (MQ=255)
                                                                gATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTg                         >  1:953101/1‑93 (MQ=255)
                                                                 aTACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTgg                        >  2:4915015/1‑93 (MQ=255)
                                                                  tACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTggg                       >  1:4368523/1‑92 (MQ=255)
                                                                  tACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGt                       <  1:2761757/93‑1 (MQ=255)
                                                                    cAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTgc                     >  2:224709/1‑93 (MQ=255)
                                                                      gAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTgcgc                   >  1:4019433/1‑93 (MQ=255)
                                                                        aaCCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTgcgcgc                 >  1:4747049/1‑91 (MQ=255)
                                                                         aCCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGcccc                <  1:3768189/93‑1 (MQ=255)
                                                                          ccTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCg               >  2:469320/1‑93 (MQ=255)
                                                                            tGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGAt             <  2:1386142/93‑1 (MQ=255)
                                                                             gCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATc            >  1:1789317/1‑93 (MQ=255)
                                                                               ggTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGt          <  2:1753470/93‑1 (MQ=255)
                                                                                gTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTc         >  2:1376925/1‑93 (MQ=255)
                                                                                gTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTc         <  1:6228763/93‑1 (MQ=255)
                                                                                  ttGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCt       <  2:3673324/93‑1 (MQ=255)
                                                                                   tGCAGGGGGGGGTCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGGCACCTGGTCCGCGCCGATCGTACTa      >  1:559671/1‑93 (MQ=255)
                                                                                     cAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTAtt    <  2:427374/93‑1 (MQ=255)
                                                                                      agggggggATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTa   >  2:5551970/1‑93 (MQ=255)
                                                                                      agggggggATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTa   <  2:2775621/93‑1 (MQ=255)
                                                                                       gggggggaTCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAg  >  2:3531509/1‑93 (MQ=255)
                                                                                          |                                                                                         
AAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAG  >  NC_000913/1924095‑1924274

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGCAAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAGTCCA  >  NC_000913/1924092‑1924278
                                                                                             |                                                                                             
GGCAAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGG                                                                                               <  SRR4302536.5221989/94‑1 (MQ=60)
GGCAAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGG                                                                                               <  SRR4302536.2672255/94‑1 (MQ=60)
  CAAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGG                                                                                             <  SRR4302536.4187386/94‑1 (MQ=60)
   AAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGG                                                                                            >  SRR4302536.1723597/1‑94 (MQ=60)
   AAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGG                                                                                            >  SRR4302536.2691974/1‑94 (MQ=60)
   AAGGCGATATCATTCCATTACACTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGG                                                                                            >  SRR4302536.3898290/1‑94 (MQ=60)
    AGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGA                                                                                           >  SRR4302536.5151333/1‑94 (MQ=60)
     GGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGAT                                                                                          >  SRR4302536.826048/1‑94 (MQ=60)
      GCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATC                                                                                         <  SRR4302536.423414/94‑1 (MQ=60)
       CGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCG                                                                                        >  SRR4302536.642862/1‑94 (MQ=60)
        GATATCATTCCATTGCGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGT                                                                                       >  SRR4302536.6929637/1‑94 (MQ=60)
        GATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGT                                                                                       >  SRR4302536.2876668/1‑94 (MQ=60)
        GATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGT                                                                                       >  SRR4302536.1555149/1‑94 (MQ=60)
        GATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGT                                                                                       >  SRR4302536.1532168/1‑94 (MQ=60)
        GATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGT                                                                                       >  SRR4302536.6737553/1‑94 (MQ=60)
        GATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGT                                                                                       >  SRR4302536.4630048/1‑94 (MQ=60)
           ATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGA                                                                                    <  SRR4302536.4242480/94‑1 (MQ=60)
           ATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGA                                                                                    <  SRR4302536.4071319/94‑1 (MQ=60)
           ATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGA                                                                                    <  SRR4302536.6308456/94‑1 (MQ=60)
             CATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGA                                                                                  >  SRR4302536.1067811/1‑94 (MQ=60)
             CATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGA                                                                                  >  SRR4302536.4453299/1‑94 (MQ=60)
             CATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGA                                                                                  <  SRR4302536.1005937/94‑1 (MQ=60)
              ATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGAT                                                                                 <  SRR4302536.2248723/94‑1 (MQ=60)
              ATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGAT                                                                                 >  SRR4302536.5580762/1‑94 (MQ=60)
              ATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGAT                                                                                 <  SRR4302536.2623044/94‑1 (MQ=60)
                TCCATTACGCTAGTCTTTTTCTGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTG                                                                               <  SRR4302536.725512/94‑1 (MQ=60)
                TCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTG                                                                               >  SRR4302536.4645537/1‑94 (MQ=60)
                 CCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGC                                                                              >  SRR4302536.1169113/1‑94 (MQ=60)
                 CCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGC                                                                              >  SRR4302536.1573402/1‑94 (MQ=60)
                  CATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAACCCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCC                                                                             <  SRR4302536.1320603/94‑1 (MQ=60)
                  CATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCC                                                                             >  SRR4302536.3565138/1‑94 (MQ=60)
                  CATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCC                                                                             <  SRR4302536.3608089/94‑1 (MQ=60)
                  CATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCC                                                                             >  SRR4302536.185520/1‑94 (MQ=60)
                  CATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCC                                                                             >  SRR4302536.4097042/1‑94 (MQ=60)
                   ATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCT                                                                            >  SRR4302536.1257033/1‑94 (MQ=60)
                   ATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCT                                                                            >  SRR4302536.3151701/1‑94 (MQ=60)
                   ATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCT                                                                            >  SRR4302536.475180/1‑94 (MQ=60)
                     TACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCT                                                                          <  SRR4302536.6876981/94‑1 (MQ=60)
                     TACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCT                                                                          >  SRR4302536.3601752/1‑94 (MQ=60)
                     TACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCT                                                                          >  SRR4302536.6160520/1‑94 (MQ=60)
                      ACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTG                                                                         <  SRR4302536.6357738/94‑1 (MQ=60)
                       CGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGT                                                                        >  SRR4302536.884405/1‑94 (MQ=60)
                        GCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTT                                                                       >  SRR4302536.2716150/1‑94 (MQ=60)
                        GCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTT                                                                       <  SRR4302536.293915/94‑1 (MQ=60)
                        GCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTT                                                                       <  SRR4302536.6143561/94‑1 (MQ=60)
                         CTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTG                                                                      >  SRR4302536.3718550/1‑94 (MQ=60)
                         CTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTG                                                                      <  SRR4302536.13835/94‑1 (MQ=60)
                         CTAGGCTTTTTCGGCCTGGAGAATGCCATGTTGCGCATTATCGATACAGAAAACTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTG                                                                      >  SRR4302536.3499120/1‑94 (MQ=60)
                         CTAGGATTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGGTTGCAGGCGGGGCTCGTTGCGATTGCCTCTGTTG                                                                      >  SRR4302536.1376203/1‑94 (MQ=60)
                          TAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGA                                                                     <  SRR4302536.2510546/94‑1 (MQ=60)
                          TAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGA                                                                     <  SRR4302536.2414216/94‑1 (MQ=60)
                          TAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATAGTTGAGATTGACTATGTTGA                                                                     >  SRR4302536.2554566/1‑94 (MQ=60)
                           AGGCTTTTTCGGCCTGGAGCGTGCCATGTTGCGCATTATCGATACAGAAGCCTGCGGTTTGCAGGGGCGGATCGTTGAGATTGCCTCTGTTGAT                                                                    <  SRR4302536.2124920/94‑1 (MQ=60)
                            GGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATG                                                                   <  SRR4302536.3255843/94‑1 (MQ=60)
                            GGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATG                                                                   <  SRR4302536.4806174/94‑1 (MQ=60)
                            GGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTCGAGATTGCCTCTGTTGATG                                                                   <  SRR4302536.5757495/94‑1 (MQ=60)
                             GCTTCTTCGGCGTGGAGCATACTATGTTGCGCATTATAGATACAGAAACCGGAGGTTTGCAGGCGGGGATCGTTGAGATTGCCTCTGTTCATGT                                                                  <  SRR4302536.1672463/94‑1 (MQ=42)
                              CTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTC                                                                 <  SRR4302536.3383272/94‑1 (MQ=60)
                              CTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTC                                                                 <  SRR4302536.5247201/94‑1 (MQ=60)
                               TTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCA                                                                >  SRR4302536.5828039/1‑94 (MQ=60)
                                   TCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGA                                                            <  SRR4302536.392847/94‑1 (MQ=60)
                                   TCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGA                                                            >  SRR4302536.3659416/1‑94 (MQ=60)
                                      GCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGG                                                         >  SRR4302536.1298103/1‑94 (MQ=60)
                                       CCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGA                                                        >  SRR4302536.749024/1‑94 (MQ=60)
                                       CCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGA                                                        >  SRR4302536.2997627/1‑94 (MQ=60)
                                       CCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGGTGAGATTGACTCTGTTGATGTCATTGACGGA                                                        >  SRR4302536.609548/1‑94 (MQ=60)
                                        CTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAA                                                       <  SRR4302536.5796675/94‑1 (MQ=60)
                                         TGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAA                                                      >  SRR4302536.1378789/1‑94 (MQ=60)
                                           GAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAA                                                    >  SRR4302536.3539425/1‑94 (MQ=60)
                                            AGCATGCCATGTTGCGCATTATCGATACAGAAGCCTGCGGTTTGCAGTGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAAT                                                   <  SRR4302536.5743428/94‑1 (MQ=60)
                                            AGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAAT                                                   >  SRR4302536.700791/1‑94 (MQ=60)
                                              CATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCG                                                 >  SRR4302536.4282077/1‑94 (MQ=60)
                                              CATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCG                                                 <  SRR4302536.4816524/94‑1 (MQ=60)
                                              CATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCG                                                 <  SRR4302536.2299916/94‑1 (MQ=60)
                                              CATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCG                                                 >  SRR4302536.6319231/1‑94 (MQ=60)
                                               ATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGT                                                >  SRR4302536.5251262/1‑94 (MQ=60)
                                               ATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGT                                                >  SRR4302536.5238796/1‑94 (MQ=60)
                                                TGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTC                                               >  SRR4302536.5026734/1‑94 (MQ=60)
                                                 GCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCA                                              >  SRR4302536.2557930/1‑94 (MQ=60)
                                                  CCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCACTGACGGAAAAATCGTCAA                                             >  SRR4302536.1123024/1‑94 (MQ=60)
                                                   CATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAC                                            >  SRR4302536.2223446/1‑94 (MQ=60)
                                                   CATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAC                                            >  SRR4302536.2631246/1‑94 (MQ=60)
                                                    ATGTTGCGCATTATCGATACAGAAGCCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACC                                           <  SRR4302536.770655/94‑1 (MQ=60)
                                                    ATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACC                                           <  SRR4302536.2113600/94‑1 (MQ=60)
                                                    ATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACC                                           >  SRR4302536.97489/1‑94 (MQ=60)
                                                     TGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCC                                          >  SRR4302536.6002204/1‑94 (MQ=60)
                                                     TGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCC                                          <  SRR4302536.1267699/94‑1 (MQ=60)
                                                        TGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCAT                                       <  SRR4302536.5689644/94‑1 (MQ=60)
                                                          CGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGA                                     >  SRR4302536.5410651/1‑94 (MQ=60)
                                                             ATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCC                                  >  SRR4302536.3836554/1‑94 (MQ=60)
                                                              TTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCA                                 >  SRR4302536.4952161/1‑94 (MQ=60)
                                                              TTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCA                                 <  SRR4302536.4190575/94‑1 (MQ=60)
                                                                ATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACC                               >  SRR4302536.3814750/1‑94 (MQ=60)
                                                                 TCGATACAGAAGCCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTGGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCT                              <  SRR4302536.4164061/94‑1 (MQ=60)
                                                                 TCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCT                              <  SRR4302536.3055571/94‑1 (MQ=60)
                                                                  CGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTG                             >  SRR4302536.2653909/1‑94 (MQ=60)
                                                                  CGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTG                             >  SRR4302536.981270/1‑94 (MQ=60)
                                                                   GATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGG                            <  SRR4302536.1810375/94‑1 (MQ=60)
                                                                    ATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGT                           >  SRR4302536.6094865/1‑94 (MQ=60)
                                                                    ATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGT                           >  SRR4302536.45419/1‑94 (MQ=60)
                                                                    ATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGG                           >  SRR4302536.4499041/1‑94 (MQ=60)
                                                                     TACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTG                          <  SRR4302536.2843915/94‑1 (MQ=60)
                                                                     TACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTG                          >  SRR4302536.3557979/1‑94 (MQ=60)
                                                                        AGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGC                       >  SRR4302536.4138680/1‑94 (MQ=60)
                                                                        AGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGC                       >  SRR4302536.1943205/1‑94 (MQ=60)
                                                                         GAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCC                      >  SRR4302536.6860865/1‑94 (MQ=60)
                                                                          AAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCGC                     >  SRR4302536.4889914/1‑94 (MQ=60)
                                                                           AACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCC                    <  SRR4302536.6161337/94‑1 (MQ=60)
                                                                            ACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCG                   <  SRR4302536.3880695/94‑1 (MQ=60)
                                                                            ACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCG                   <  SRR4302536.5291809/94‑1 (MQ=60)
                                                                            ACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCG                   <  SRR4302536.4706107/94‑1 (MQ=60)
                                                                            ACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCG                   <  SRR4302536.2311901/94‑1 (MQ=60)
                                                                             CCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGA                  >  SRR4302536.2854301/1‑94 (MQ=60)
                                                                               TGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATC                <  SRR4302536.6807611/94‑1 (MQ=60)
                                                                               TGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATC                >  SRR4302536.1843370/1‑94 (MQ=60)
                                                                                   GTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCC            <  SRR4302536.6414341/94‑1 (MQ=60)
                                                                                     TTGCAGGGGGGGGTCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGGCACCTGGTCCGCGCCGATCGTACTA          >  SRR4302536.573933/1‑94 (MQ=60)
                                                                                     TTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTA          <  SRR4302536.5037254/94‑1 (MQ=60)
                                                                                        CAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTA       >  SRR4302536.119622/1‑94 (MQ=60)
                                                                                         AGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAG      <  SRR4302536.2667672/94‑1 (MQ=60)
                                                                                          GGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAGT     >  SRR4302536.4489895/1‑94 (MQ=60)
                                                                                            GGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAGTCC   <  SRR4302536.1462655/94‑1 (MQ=60)
                                                                                             GGGGATCGTTTAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAGTCCA  <  SRR4302536.3374916/94‑1 (MQ=60)
                                                                                             GGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAGTCCA  <  SRR4302536.2841718/94‑1 (MQ=60)
                                                                                             |                                                                                             
GGCAAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAGTCCA  >  NC_000913/1924092‑1924278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑