Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,930,097 |
(A)7→6 |
intergenic (+14/+42) |
purT → / ← eda |
phosphoribosylglycinamide formyltransferase 2/2‑keto‑3‑deoxygluconate 6‑phosphate aldolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,930,091 | 0 | A | . | 98.9%
| 417.5
/ ‑2.3
| 95 | intergenic (+8/+48) | purT/eda | phosphoribosylglycinamide formyltransferase 2/2‑keto‑3‑deoxygluconate 6‑phosphate aldolase |
| Reads supporting (aligned to +/- strand): ref base A (0/1); major base . (39/54); minor base C (1/0); total (40/55) |
| Fisher's exact test for biased strand distribution p-value = 4.26e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 116 total aligned reads displayed.
GGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAG > NC_000913/1929999‑1930179
|
ggTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCa > 1:62306/1‑93 (MQ=255)
ggTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCa < 1:87399/93‑1 (MQ=255)
gTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCaa > 2:4090774/1‑93 (MQ=255)
gTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCaa < 2:2950145/93‑1 (MQ=255)
tGGCACTGGCTACTGCAGAGAGCGTTGTTGACCCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAAAACAGGGTAAACCCGGGCaaa > 2:3606000/1‑93 (MQ=255)
ggCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCaaaa > 1:1152514/1‑93 (MQ=255)
ggCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCaaaa < 1:428108/93‑1 (MQ=255)
cACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCaaaaaa < 1:1079875/93‑1 (MQ=255)
cACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCaaaaaa < 1:4472388/93‑1 (MQ=255)
aCTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCaaaaaac < 1:4272287/93‑2 (MQ=255)
cTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCaaaaaacg < 1:1193332/93‑3 (MQ=255)
tGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCaaaaaacgc < 2:471563/93‑4 (MQ=255)
tGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCaaaaaacgc < 2:3432543/93‑4 (MQ=255)
ggCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCaaaaaacgct > 2:4514943/1‑89 (MQ=255)
gCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTa > 2:1933779/1‑93 (MQ=255)
cTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTAc < 2:1168063/93‑1 (MQ=255)
cTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTAc < 2:1610553/93‑1 (MQ=255)
aCTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACaa < 1:1191025/93‑1 (MQ=255)
cTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACaaa < 1:4625815/93‑1 (MQ=255)
gCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACaaaaa < 1:2828604/93‑1 (MQ=255)
gCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACaaaaa > 1:1046735/1‑93 (MQ=255)
gCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACaaaaa > 2:4331600/1‑93 (MQ=255)
agagagTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATg > 1:1088734/1‑93 (MQ=255)
gagagTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGc < 1:2705432/93‑1 (MQ=255)
gagagCTTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAGCCCGGC‑AAAAAACGCTACAAAAATGc < 2:1419684/93‑1 (MQ=255)
agagTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGcc < 2:3680533/93‑1 (MQ=255)
agagTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGcc < 1:1357465/93‑1 (MQ=255)
agagTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGcc > 1:3529679/1‑93 (MQ=255)
gtgtTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGa < 1:4008221/93‑1 (MQ=255)
gtgtTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGa > 2:3112211/1‑93 (MQ=255)
gtgtTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGa < 1:2769568/93‑1 (MQ=255)
tgttgtTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACGGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGAt > 1:308403/1‑93 (MQ=255)
tgttgtTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGac > 1:308402/1‑92 (MQ=255)
tgttgtTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGAt < 2:3890113/93‑1 (MQ=255)
ttgACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCg < 1:2488420/93‑1 (MQ=255)
ttgACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCg < 1:1322907/93‑1 (MQ=255)
gACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGAt < 2:609241/93‑1 (MQ=255)
aCGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATc > 1:3093063/1‑93 (MQ=255)
cGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCg < 2:2064583/93‑1 (MQ=255)
cGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCg < 2:2341532/93‑1 (MQ=255)
ccATTGAACGCGCGAAACACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCggg > 2:4508118/1‑93 (MQ=255)
aTTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCa < 1:3759032/93‑1 (MQ=255)
aTTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCa > 2:147163/1‑93 (MQ=255)
aTTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCa > 2:726149/1‑93 (MQ=255)
aTTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCa < 2:3700203/93‑1 (MQ=255)
aTTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCa > 1:4280196/1‑93 (MQ=255)
ttGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCAt < 1:1548301/93‑1 (MQ=255)
ttGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCAt > 2:2459855/1‑93 (MQ=255)
tGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGG‑AAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCAtt < 2:1655301/93‑1 (MQ=255)
aCGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCAttttt > 2:2639672/1‑92 (MQ=255)
gcgcgAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGAc < 2:4651323/93‑1 (MQ=255)
gcgcgAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGAc < 1:3168315/93‑1 (MQ=255)
gAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAACCCCGGC‑AAAAACCGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACtttt < 2:1704805/93‑1 (MQ=255)
gAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACtttt < 2:3863915/93‑1 (MQ=255)
gAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACtttt > 2:612550/1‑93 (MQ=255)
aaGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAACCCCGGC‑AAAAAACGCTACAAAACTGCCCGATCCTCGATCCGGCATTTTGACTTTTa > 1:126689/1‑93 (MQ=255)
aGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTAc < 1:4049477/93‑1 (MQ=255)
gCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTTATTTTTACa > 2:2717600/1‑93 (MQ=255)
gCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACa > 2:2717599/1‑93 (MQ=255)
cgccgcCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCt < 1:3271415/93‑1 (MQ=255)
cgccgcCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCt < 1:2112657/93‑1 (MQ=255)
ccgccgGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGCGCATTTTGACTTTTACAGCTTa < 1:820521/93‑1 (MQ=255)
ccgGACAGGTAAAAGGACAGGGTAAAACCCGGC‑AAAAAACGCTACAAAAATCCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAgcg < 2:47403/93‑1 (MQ=255)
ggACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGcc > 1:2093380/1‑93 (MQ=255)
ggACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGcc > 1:371070/1‑93 (MQ=255)
ggACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGcc > 1:2909931/1‑93 (MQ=255)
gACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCt > 1:1913890/1‑93 (MQ=255)
aCAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTTACTTTTACAGCTTAGCGccct > 1:2601777/1‑91 (MQ=255)
cAGGTAAAAGTACAGGGTTAACCCCGGC‑AAAAAACGCTACAAAAAGGCCCGACCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTc < 2:1809423/93‑1 (MQ=255)
cAGGTAAAAGTACAGGGTTAAAGCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTc > 1:842628/1‑93 (MQ=255)
aGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCt > 1:2847276/1‑93 (MQ=255)
ggTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTa > 1:3193354/1‑93 (MQ=255)
ggTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTa > 2:1291695/1‑93 (MQ=255)
gTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTAc < 2:1454938/93‑1 (MQ=255)
tAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGGCCCATCCTCGATCAGGCATTTTGACTTTTACATCTTATCGACTTCTACa > 2:1247126/1‑93 (MQ=255)
tAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACa < 1:663048/93‑1 (MQ=255)
tAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACa < 1:4112731/93‑1 (MQ=255)
tAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACa < 1:309562/93‑1 (MQ=255)
tAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACGTTTACAGCTTAGCGCCTTCTACa < 2:4636805/93‑1 (MQ=255)
aaGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCt > 1:4012447/1‑93 (MQ=255)
aGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCtt > 1:570165/1‑93 (MQ=255)
aGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCtt > 1:1062635/1‑93 (MQ=255)
gTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTc < 1:149765/93‑1 (MQ=255)
gTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTc < 1:2591474/93‑1 (MQ=255)
gTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTc > 1:97458/1‑93 (MQ=255)
tACAGGGTTAACCCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCa < 2:2893272/93‑1 (MQ=255)
tACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCa < 2:2893269/93‑1 (MQ=255)
aCAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCAc < 2:728581/93‑1 (MQ=255)
aCAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCAc < 2:3829210/93‑1 (MQ=255)
cAGGGTTAAACCCGGC‑AAAAAACGCTCAAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCAcg < 1:3524915/93‑1 (MQ=255)
gggTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTTACTTTTACAGCTTAGCGCCTTCTACAGCTTCAcgcg > 2:2762039/1‑93 (MQ=255)
gggTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGAGCCTTCTACAGCTTCActcg > 2:2467025/1‑93 (MQ=255)
tAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCTGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAg < 1:1634413/93‑1 (MQ=255)
tAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAg < 1:1634552/93‑1 (MQ=255)
aaaCCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGc < 1:365414/93‑1 (MQ=255)
aaaCCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGc > 2:3099083/1‑93 (MQ=255)
aaCCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCt > 1:4644138/1‑93 (MQ=255)
cccGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTa < 1:1027371/93‑1 (MQ=255)
cccGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTa > 1:3286763/1‑93 (MQ=255)
ccGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAg > 1:3883227/1‑93 (MQ=255)
|
GGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAG > NC_000913/1929999‑1930179
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCG > NC_000913/1930004‑1930190
|
cctggtCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCTAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAC < SRR4302544.4517369/88‑1 (MQ=60)
CACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAC < SRR4302544.4517368/94‑1 (MQ=60)
CACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAC < SRR4302544.1090611/94‑1 (MQ=60)
CTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGC < SRR4302544.1205169/94‑1 (MQ=60)
CTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGC < SRR4302544.1205170/94‑1 (MQ=60)
ACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAA < SRR4302544.1202842/94‑1 (MQ=60)
CTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAA < SRR4302544.4671690/94‑1 (MQ=60)
TGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAA > SRR4302544.1057113/1‑94 (MQ=60)
GCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAAT < SRR4302544.2855931/94‑1 (MQ=60)
CAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATG > SRR4302544.1099561/1‑94 (MQ=60)
GAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCC > SRR4302544.3563430/1‑94 (MQ=60)
GAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCC < SRR4302544.2731448/94‑1 (MQ=60)
AGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCC < SRR4302544.1370935/94‑1 (MQ=60)
AGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCC < SRR4302544.3786426/94‑1 (MQ=60)
GTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACGGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGAT > SRR4302544.311604/1‑94 (MQ=60)
GTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGAT < SRR4302544.4048098/94‑1 (MQ=60)
GTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGAT < SRR4302544.2796216/94‑1 (MQ=60)
GTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGAC > SRR4302544.311603/1‑94 (MQ=60)
TGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTC < SRR4302544.1597417/94‑1 (MQ=60)
TTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGA < SRR4302544.2512252/94‑1 (MQ=60)
TTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGA < SRR4302544.1335922/94‑1 (MQ=60)
GACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATC > SRR4302544.3122528/1‑94 (MQ=60)
GCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGG < SRR4302544.289025/94‑1 (MQ=60)
CATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCA > SRR4302544.4323904/1‑94 (MQ=60)
ATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCAT < SRR4302544.3796346/94‑1 (MQ=60)
TTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATT < SRR4302544.1563723/94‑1 (MQ=60)
AACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCccacctcccctcggggctttt > SRR4302544.4190367/1‑73 (MQ=60)
GCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACT < SRR4302544.3198467/94‑1 (MQ=60)
GAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAACCCCGGC‑AAAAAACGCTACAAAACTGCCCGATCCTCGATCCGGCATTTTGACTTTTA > SRR4302544.127855/1‑94 (MQ=60)
AGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACA < SRR4302544.4089809/94‑1 (MQ=60)
GCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAG < SRR4302544.3253762/94‑1 (MQ=60)
CGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTT < SRR4302544.3302616/94‑1 (MQ=60)
CGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTT < SRR4302544.2132967/94‑1 (MQ=60)
CCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGCGCATTTTGACTTTTACAGCTTAG < SRR4302544.828545/94‑1 (MQ=60)
CGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCC > SRR4302544.374861/1‑94 (MQ=60)
CGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCC > SRR4302544.2937927/1‑94 (MQ=60)
CGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGAC > SRR4302544.2113533/1‑94 (MQ=60)
GGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCT > SRR4302544.1932384/1‑94 (MQ=60)
GACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTTACTTTTACAGCTTAGCGCCCT > SRR4302544.2626782/1‑94 (MQ=60)
ACAGGTAAAAGTACAGGGTTAAAGCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTC > SRR4302544.850951/1‑94 (MQ=60)
CAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCT > SRR4302544.2874777/1‑94 (MQ=60)
AAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCT < SRR4302544.4211934/94‑1 (MQ=60)
AGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTA > SRR4302544.3223787/1‑94 (MQ=60)
TAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAG < SRR4302544.4153599/94‑1 (MQ=60)
TAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAG < SRR4302544.312783/94‑1 (MQ=60)
TAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAG < SRR4302544.669595/94‑1 (MQ=60)
AAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCT > SRR4302544.4052362/1‑94 (MQ=60)
AAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTT > SRR4302544.1073203/1‑94 (MQ=60)
AAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTT > SRR4302544.575739/1‑94 (MQ=60)
AGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTC > SRR4302544.98348/1‑94 (MQ=60)
GTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCA < SRR4302544.151198/94‑1 (MQ=60)
GTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCA < SRR4302544.2616401/94‑1 (MQ=60)
CAGGGTTAAACCCGGC‑AAAAAACGCTCAAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGC < SRR4302544.3558593/94‑1 (MQ=60)
GTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCCCGATCGGGGATTTTTACTTTTTCAGCTTAGAGCCCTCTTCAGCTTCACCCGCCC > SRR4302544.2671521/1‑94 (MQ=46)
GTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAG < SRR4302544.481417/94‑1 (MQ=60)
TAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCTGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGC < SRR4302544.1650500/94‑1 (MQ=60)
TAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGC < SRR4302544.1650642/94‑1 (MQ=60)
AAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCT < SRR4302544.369151/94‑1 (MQ=60)
AAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCT > SRR4302544.4690126/1‑94 (MQ=60)
ACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTA > SRR4302544.3318079/1‑94 (MQ=60)
CCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAG > SRR4302544.3921799/1‑94 (MQ=60)
CCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAG < SRR4302544.1037617/94‑1 (MQ=60)
CGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTA > SRR4302544.2741303/1‑94 (MQ=60)
GGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAA > SRR4302544.2807399/1‑94 (MQ=60)
gcAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAAT < SRR4302544.1801035/92‑1 (MQ=60)
AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGC < SRR4302544.756526/94‑1 (MQ=60)
AAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTTACTTTTTCAGCTTTGCGCCTTTTAAAGCTTCACGCGCCAGCTTATCAATGCG > SRR4302544.2654352/1‑94 (MQ=60)
AAACCGCAACAAAAATGCCCGACCCTGGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGG < SRR4302544.3401226/94‑1 (MQ=60)
AAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGG < SRR4302544.3011247/94‑1 (MQ=60)
AAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGG > SRR4302544.2212647/1‑94 (MQ=60)
AAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTAAAGCTTAGCGCCTTCTACAACTTCACGCGCCCGCCTAGTAATGGGG > SRR4302544.2728550/1‑94 (MQ=60)
ACGCTACAAAAATGCCCGATCCTCGATCGGTCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCG < SRR4302544.47488/94‑1 (MQ=60)
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CACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCG > NC_000913/1930004‑1930190
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
