Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,983,543 |
(C)5→4 |
coding (609/990 nt) |
araF ← |
L‑arabinose‑binding periplasmic protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,983,539 | 0 | C | . | 98.2%
| 492.9
/ 0.3
| 113 | coding (613/990 nt) | araF | L‑arabinose‑binding periplasmic protein |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base . (55/55); total (56/57) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.18e-01 |
Only 100 of 123 total aligned reads displayed.
GCCGCCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTA > NC_000913/1983447‑1983627
|
gccgccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGc < 1:2546208/93‑1 (MQ=255)
gccgccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGc < 1:2546207/93‑1 (MQ=255)
cgccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGccc < 2:1112261/93‑1 (MQ=255)
cgccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGccc < 1:4176378/93‑1 (MQ=255)
cgccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGccc < 1:41711/93‑1 (MQ=255)
cccAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGccccg > 1:3792496/1‑92 (MQ=255)
ccAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGccccgg > 1:1011667/1‑91 (MQ=255)
cAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGcccggga > 2:2087560/1‑89 (MQ=255)
gCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGa < 1:3130169/93‑1 (MQ=255)
gCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGAt < 1:4446529/93‑1 (MQ=255)
gCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGAt > 2:4149711/1‑93 (MQ=255)
aCGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGt < 1:990904/93‑1 (MQ=255)
aCGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGt < 1:3648136/93‑1 (MQ=255)
aCGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGt > 2:2233285/1‑93 (MQ=255)
aCGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGt > 1:1897120/1‑93 (MQ=255)
gTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGt < 2:192965/93‑1 (MQ=255)
cTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAg > 2:3069609/1‑93 (MQ=255)
cTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAg < 1:1136115/93‑1 (MQ=255)
tGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGa < 2:4024847/93‑1 (MQ=255)
tCGTTCATACCGACGATCAGCTAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAA‑GGCCCCGGGATGTCGTTAGAtt < 2:2124338/93‑1 (MQ=255)
cGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTCGAttt < 2:4709730/93‑1 (MQ=255)
cGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGAttt < 1:2844008/93‑1 (MQ=255)
gTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CTCCGGGATGTCGTTAGATTTg > 1:4685560/1‑93 (MQ=255)
ttCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTgg < 2:4419730/93‑1 (MQ=255)
ttCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTgg < 1:601583/93‑1 (MQ=255)
tCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggt < 1:330478/93‑1 (MQ=255)
cATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggta > 1:590485/1‑93 (MQ=255)
cATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggta < 2:1795485/93‑1 (MQ=255)
tACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑ACCCGGGATGTCGTTAGATTTggtagg > 1:1731646/1‑93 (MQ=255)
aCCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggtaggt < 1:4736365/93‑1 (MQ=255)
aCCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggtaggt < 1:2442556/93‑1 (MQ=255)
ccGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggtaggta > 1:3294446/1‑93 (MQ=255)
acgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCt < 1:1463316/93‑1 (MQ=255)
cgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTg > 1:3382605/1‑93 (MQ=255)
gaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGa > 2:338216/1‑93 (MQ=255)
gaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGa > 1:752998/1‑93 (MQ=255)
aTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGAt > 2:2091602/1‑93 (MQ=255)
aTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGAt > 1:3459125/1‑93 (MQ=255)
aTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGAt > 2:953901/1‑93 (MQ=255)
tCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATa > 2:4698257/1‑93 (MQ=255)
tCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATa > 2:4698258/1‑93 (MQ=255)
tCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATa < 2:1054404/93‑1 (MQ=255)
gCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAt > 1:3515279/1‑93 (MQ=255)
gCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAt > 1:1411013/1‑93 (MQ=255)
gCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAt < 1:2540697/93‑1 (MQ=255)
ccAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAt > 2:3683347/1‑93 (MQ=255)
ccAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAtt < 2:1555592/93‑1 (MQ=255)
cAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAttt > 1:2350642/1‑93 (MQ=255)
cAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAttt < 2:4386273/93‑1 (MQ=255)
taTGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTg > 2:4206939/2‑93 (MQ=255)
aaTGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTg > 2:2117640/1‑93 (MQ=255)
aaTGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTg > 1:3344533/1‑93 (MQ=255)
aTGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGt > 2:267827/1‑93 (MQ=255)
aTGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGt < 2:2127144/93‑1 (MQ=255)
aTGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGt < 1:52067/93‑1 (MQ=255)
aTGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGt < 2:3552157/93‑1 (MQ=255)
tGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGtt > 1:878495/1‑93 (MQ=255)
tttAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGtttt < 1:2683812/93‑1 (MQ=255)
tAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTc < 2:1985720/93‑1 (MQ=255)
aaCTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAGTG‑CCCCGGGATGTCGTTAGATTTGGTAGGAACCTGATAAATTTGTTTTAcc < 2:4217939/93‑1 (MQ=255)
cTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCgg > 2:2462924/1‑93 (MQ=255)
cTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCgg < 1:363485/93‑1 (MQ=255)
cTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCgg < 1:1165085/93‑1 (MQ=255)
ttCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCggg > 2:448218/1‑93 (MQ=255)
ccGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGaa < 2:188487/93‑1 (MQ=255)
ccGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGaa < 2:188488/93‑1 (MQ=255)
ccGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGaa < 2:4622829/93‑1 (MQ=255)
cGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAAt < 2:1233100/93‑1 (MQ=255)
cGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAAt > 2:3436809/1‑93 (MQ=255)
gATGTTGAATCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGTATGGCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATcg > 1:1573824/1‑92 (MQ=255)
gATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATcg > 1:3853873/1‑92 (MQ=255)
gATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATcc > 1:1155172/1‑93 (MQ=255)
aTGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCg < 1:623803/93‑1 (MQ=255)
aTGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCg > 1:1523397/1‑93 (MQ=255)
aTGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCg < 1:2332917/93‑1 (MQ=255)
tGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCgg > 2:299741/1‑93 (MQ=255)
gTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGc > 2:1281441/1‑93 (MQ=255)
gTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGc > 1:4229477/1‑93 (MQ=255)
gTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGc < 2:217579/93‑1 (MQ=255)
aaCCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCt > 1:1342398/1‑93 (MQ=255)
ccAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCttt < 1:2142158/93‑1 (MQ=255)
cAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTc > 2:2965858/1‑93 (MQ=255)
gCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAg < 2:1564338/93‑1 (MQ=255)
gCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAg > 1:2213160/1‑93 (MQ=255)
gCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAg > 1:2991965/1‑93 (MQ=255)
cATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAgc < 1:355891/93‑1 (MQ=255)
aTTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAgcg > 1:3293122/1‑93 (MQ=255)
gAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCAt < 1:1747386/93‑1 (MQ=255)
aGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATc < 1:3377654/93‑1 (MQ=255)
ttGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCa < 2:1283867/93‑1 (MQ=255)
ttGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCa < 1:130479/93‑1 (MQ=255)
gCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGACCGGTTTAAGCGCATCGATAg > 2:1449610/1‑93 (MQ=255)
cAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGa < 1:2846721/93‑1 (MQ=255)
gCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATc > 2:3615069/1‑93 (MQ=255)
cGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATcc > 2:403917/1‑93 (MQ=255)
tCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCg > 1:4701283/1‑93 (MQ=255)
cAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCgt < 1:1025688/93‑1 (MQ=255)
aaaTG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCgta < 1:793854/93‑1 (MQ=255)
aaaTG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCgta < 2:3052067/93‑1 (MQ=255)
aaaTG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCgta < 2:2769198/93‑1 (MQ=255)
|
GCCGCCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTA > NC_000913/1983447‑1983627
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGCG > NC_000913/1983450‑1983635
|
GCCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCG > SRR4302544.3830046/1‑94 (MQ=60)
CCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCGG > SRR4302544.1021748/1‑94 (MQ=60)
GCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGAT < SRR4302544.3159909/94‑1 (MQ=60)
GCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATG < SRR4302544.4491335/94‑1 (MQ=60)
GCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATG < SRR4302544.590857/94‑1 (MQ=60)
CACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGT > SRR4302544.1915455/1‑94 (MQ=60)
ACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTC < SRR4302544.1000665/94‑1 (MQ=60)
ACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTC < SRR4302544.3684539/94‑1 (MQ=60)
CGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTACCTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCG < SRR4302544.2604020/94‑1 (MQ=60)
CTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGA < SRR4302544.1147418/94‑1 (MQ=60)
CGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CTCCGGGATGTCGTTAGATTTG > SRR4302544.4731874/1‑94 (MQ=60)
CGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTG < SRR4302544.2871465/94‑1 (MQ=60)
TTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGT < SRR4302544.607482/94‑1 (MQ=60)
TCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTA > SRR4302544.596282/1‑94 (MQ=60)
TCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTA < SRR4302544.333912/94‑1 (MQ=60)
ATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑ACCCGGGATGTCGTTAGATTTGGTAGG > SRR4302544.1748621/1‑94 (MQ=60)
ACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTA < SRR4302544.2465845/94‑1 (MQ=60)
ACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTA > SRR4302544.3325825/1‑94 (MQ=60)
ACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTA < SRR4302544.4783060/94‑1 (MQ=60)
ACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTG < SRR4302544.1477823/94‑1 (MQ=60)
ACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTG > SRR4302544.3414912/1‑94 (MQ=60)
CGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGA > SRR4302544.760352/1‑94 (MQ=60)
GATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGAT > SRR4302544.3492140/1‑94 (MQ=60)
AGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAT > SRR4302544.3548832/1‑94 (MQ=60)
AGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAT > SRR4302544.1425066/1‑94 (MQ=60)
GCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATT < SRR4302544.2565091/94‑1 (MQ=60)
CCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGTAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTT > SRR4302544.2699899/1‑94 (MQ=60)
CCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTT > SRR4302544.2372911/1‑94 (MQ=60)
CAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTG > SRR4302544.3376430/1‑94 (MQ=60)
AATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGT > SRR4302544.1234520/1‑94 (MQ=60)
ATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTT < SRR4302544.52596/94‑1 (MQ=60)
ATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTT > SRR4302544.887205/1‑94 (MQ=60)
GTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTT > SRR4302544.3397037/1‑94 (MQ=60)
TTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTT < SRR4302544.2709528/94‑1 (MQ=60)
TTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTT > SRR4302544.881641/1‑94 (MQ=60)
TTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTT > SRR4302544.1509590/1‑94 (MQ=60)
TAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCC < SRR4302544.389948/94‑1 (MQ=60)
CTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGG < SRR4302544.367205/94‑1 (MQ=60)
CTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGG < SRR4302544.1176696/94‑1 (MQ=60)
CGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATC > SRR4302544.3224875/1‑94 (MQ=60)
CGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATC > SRR4302544.198311/1‑94 (MQ=60)
GGATGTTGAATCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGTATGGCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCG > SRR4302544.1589382/1‑94 (MQ=60)
GGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCG > SRR4302544.3892125/1‑94 (MQ=60)
GGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCC > SRR4302544.1166661/1‑94 (MQ=60)
GATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCG > SRR4302544.1538511/1‑94 (MQ=60)
ATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGG < SRR4302544.629929/94‑1 (MQ=60)
ATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGG < SRR4302544.2355036/94‑1 (MQ=60)
TGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGC > SRR4302544.4272569/1‑94 (MQ=60)
TTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCG > SRR4302544.2435632/1‑94 (MQ=60)
TAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCT > SRR4302544.1355676/1‑94 (MQ=60)
CCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTC < SRR4302544.2162598/94‑1 (MQ=60)
AGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAG > SRR4302544.2233986/1‑94 (MQ=60)
AGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAG > SRR4302544.3020657/1‑94 (MQ=60)
CATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCG < SRR4302544.359541/94‑1 (MQ=60)
CATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCG > SRR4302544.3324488/1‑94 (MQ=60)
GAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATC < SRR4302544.1764491/94‑1 (MQ=60)
AGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCC > SRR4302544.3585242/1‑94 (MQ=60)
AGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCC < SRR4302544.3409896/94‑1 (MQ=60)
GTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCA < SRR4302544.454068/94‑1 (MQ=60)
TTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCAT < SRR4302544.131678/94‑1 (MQ=60)
CAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGAT < SRR4302544.2874216/94‑1 (MQ=60)
GTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCG > SRR4302544.4747752/1‑94 (MQ=60)
CAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTA < SRR4302544.1035924/94‑1 (MQ=60)
AAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAG < SRR4302544.801537/94‑1 (MQ=60)
AATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTCCCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTtagagcctccttagataccgtggt > SRR4302544.1378138/1‑70 (MQ=60)
AATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGT > SRR4302544.1378137/1‑94 (MQ=60)
AATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGT < SRR4302544.2178825/94‑1 (MQ=60)
tgCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTAC < SRR4302544.3306700/92‑1 (MQ=60)
GCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACG < SRR4302544.568995/94‑1 (MQ=60)
GCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACG < SRR4302544.1738820/94‑1 (MQ=60)
GCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACG < SRR4302544.3504153/94‑1 (MQ=60)
GCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACG < SRR4302544.943067/94‑1 (MQ=60)
CCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGCG > SRR4302544.3394616/1‑94 (MQ=60)
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GCCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGCG > NC_000913/1983450‑1983635
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
