Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1475 |
266.7 |
13469680 |
98.2% |
13227225 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,983,543 |
(C)5→4 |
coding (609/990 nt) |
araF ← |
L‑arabinose‑binding periplasmic protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,983,539 | 0 | C | . | 97.2%
| 951.7
/ 13.4
| 218 | coding (613/990 nt) | araF | L‑arabinose‑binding periplasmic protein |
| Reads supporting (aligned to +/- strand): ref base C (1/5); new base . (110/102); total (111/107) |
| Fisher's exact test for biased strand distribution p-value = 1.14e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.82e-01 |
Only 100 of 232 total aligned reads displayed.
CCGCCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTA > NC_000913/1983448‑1983627
|
cgccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGccc < 1:2031299/93‑1 (MQ=255)
cgccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGccc < 1:2533588/93‑1 (MQ=255)
gccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGcccc > 2:2029910/1‑93 (MQ=255)
cccAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGccccg < 2:62029/93‑2 (MQ=255)
ccAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGccccgg > 2:3794291/1‑91 (MQ=255)
aGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCggga < 2:702669/93‑2 (MQ=255)
aGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCggga < 1:2336463/93‑2 (MQ=255)
aGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCggga > 2:2178910/1‑92 (MQ=255)
gCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGAt < 1:5400789/93‑1 (MQ=255)
gCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGAt < 2:2578724/93‑1 (MQ=255)
gCACGGGGCTGTCTTACATACCGACGATCAGCGAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGAt < 1:5267445/93‑1 (MQ=255)
cGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTc > 2:733304/1‑93 (MQ=255)
cGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTc < 2:3980240/93‑1 (MQ=255)
ggTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCg < 2:1389989/93‑1 (MQ=255)
gTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGt < 2:2689980/93‑1 (MQ=255)
gCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTa < 1:1140004/93‑1 (MQ=255)
cTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAg > 1:2154452/1‑93 (MQ=255)
tGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGa > 2:1225763/1‑93 (MQ=255)
gTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGAt < 1:6435194/93‑1 (MQ=255)
gTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGAt > 1:19353/1‑93 (MQ=255)
tCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGAtt > 2:2219388/1‑93 (MQ=255)
gTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTg > 2:6335101/1‑93 (MQ=255)
ttCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTgg < 2:3330472/93‑1 (MQ=255)
ttCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTgg > 1:4530919/1‑93 (MQ=255)
tCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggt < 1:3581299/93‑1 (MQ=255)
cATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggta < 2:4357982/93‑1 (MQ=255)
cATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggta > 1:4923984/1‑93 (MQ=255)
cATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggta < 2:388314/93‑1 (MQ=255)
aTACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggtag < 2:5760570/93‑1 (MQ=255)
aTACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggtag < 1:1557664/93‑1 (MQ=255)
tACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggtagg > 2:5078131/1‑93 (MQ=255)
aCCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggtaggt < 2:5665792/93‑1 (MQ=255)
aCCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑ACCCGGGATGTCGTTAGATTTggtaggt > 1:5367640/1‑93 (MQ=255)
ccGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggtaggta > 1:1466663/1‑93 (MQ=255)
gacgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTAcc < 2:1291917/93‑1 (MQ=255)
acgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCt > 2:4711414/1‑93 (MQ=255)
acgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCt > 1:3079744/1‑93 (MQ=255)
cgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTg > 1:3698178/1‑93 (MQ=255)
gaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGa < 2:3177618/93‑1 (MQ=255)
tCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATa > 1:5345270/1‑93 (MQ=255)
ccAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAtt < 1:3030683/93‑1 (MQ=255)
cAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAttt > 2:2977867/1‑93 (MQ=255)
aaTGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTg > 2:265391/1‑93 (MQ=255)
aTGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGt < 2:772374/93‑1 (MQ=255)
aTGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGt < 2:3640744/93‑1 (MQ=255)
aTGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGt < 1:2654387/93‑1 (MQ=255)
aTGTGTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGt < 1:2438213/93‑1 (MQ=255)
gTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGttt > 2:6627627/1‑93 (MQ=255)
tttAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGtttt < 2:4249911/93‑1 (MQ=255)
tttAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGtttt < 2:1927154/93‑1 (MQ=255)
ttAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGttttt > 2:5053894/1‑93 (MQ=255)
ttAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGttttt > 2:3240871/1‑93 (MQ=255)
aaCTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTcc > 1:333979/1‑93 (MQ=255)
aaCTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTcc < 1:3954584/93‑1 (MQ=255)
aCTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCg > 2:1350159/1‑93 (MQ=255)
aCTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCg < 1:5898867/93‑1 (MQ=255)
cTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCgg < 1:6472280/93‑1 (MQ=255)
tCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGa < 2:4923835/93‑1 (MQ=255)
tCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGa < 1:3559695/93‑1 (MQ=255)
ccGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGaa < 2:16150/93‑1 (MQ=255)
ccGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGaa < 2:2946427/93‑1 (MQ=255)
ggATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATc < 2:5245598/93‑1 (MQ=255)
aTGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTTCGGGAATCCg > 1:5626552/1‑93 (MQ=255)
aTGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCg > 2:549265/1‑93 (MQ=255)
tGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCgg < 2:590047/93‑1 (MQ=255)
tGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCgg < 2:4536068/93‑1 (MQ=255)
gTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGc < 2:3128538/93‑1 (MQ=255)
gTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGc < 2:1144090/93‑1 (MQ=255)
ttGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGcc > 2:790029/1‑93 (MQ=255)
ttGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGcc > 1:5697497/1‑93 (MQ=255)
gAACCAGCATTGATTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGc < 2:6709214/93‑1 (MQ=255)
gAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGc > 1:6581008/1‑93 (MQ=255)
gaCCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCt < 2:2288831/92‑1 (MQ=255)
aaCCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCt > 2:3424641/1‑93 (MQ=255)
aaCCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCt < 1:3414164/93‑1 (MQ=255)
aCCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCtt < 1:6516414/93‑1 (MQ=255)
aCCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCtt > 1:3776714/1‑93 (MQ=255)
aGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCa > 1:1792232/1‑93 (MQ=255)
gCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAg > 2:4680075/1‑93 (MQ=255)
gCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAg > 1:5806026/1‑93 (MQ=255)
gCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAg > 2:6164224/1‑93 (MQ=255)
gCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCAGCTTTCAg > 1:1644359/1‑93 (MQ=255)
cATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAgc < 1:1962227/93‑1 (MQ=255)
aTTGAGTTGGCAGCGTCAAATG‑CCCCGGGGTGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTTCGGGAATCCGGCCGCTTTCAgcg > 2:6428348/1‑93 (MQ=255)
ttGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAgcgc < 1:2301521/93‑1 (MQ=255)
ttGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAgcgc > 2:1839528/1‑93 (MQ=255)
acttGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCAGGAATCCGGCCGCTTTCAGCGCATc > 2:6484162/3‑93 (MQ=255)
ttGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCa < 1:692618/93‑1 (MQ=255)
tGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCAt < 2:5611750/93‑1 (MQ=255)
ggCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATa < 1:99077/93‑1 (MQ=255)
ggCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATa > 1:2918867/1‑93 (MQ=255)
ggCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATa < 2:5425136/93‑1 (MQ=255)
ggCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATa > 1:5055999/1‑93 (MQ=255)
cAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGa < 1:2162373/93‑1 (MQ=255)
cAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGa < 2:4444626/93‑1 (MQ=255)
gCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTCATAACTTTGTTTTTCCGGGAATCGGGCCGCTTTCAGCGCATCCATAGATc > 2:3560407/1‑93 (MQ=255)
gTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATccc > 2:3504796/1‑93 (MQ=255)
gTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATccc < 1:609170/93‑1 (MQ=255)
tCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCg > 1:94055/1‑93 (MQ=255)
aaaTG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCACgta > 1:5865003/1‑93 (MQ=255)
|
CCGCCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTA > NC_000913/1983448‑1983627
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGCG > NC_000913/1983451‑1983635
|
CCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCGG > SRR4302536.3671677/1‑94 (MQ=60)
CAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGA < SRR4302536.1012438/94‑1 (MQ=60)
AGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGAT < SRR4302536.2407350/94‑1 (MQ=60)
AGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGAT < SRR4302536.2302782/94‑1 (MQ=60)
AGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGAT > SRR4302536.350124/1‑94 (MQ=60)
GCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATG < SRR4302536.5562114/94‑1 (MQ=60)
GCACGGGGCTGTCTTACATACCGACGATCAGCGAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATG < SRR4302536.5424433/94‑1 (MQ=60)
CCGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTC < SRR4302536.5520245/94‑1 (MQ=60)
ACGGTGCTGTCGTTCGTACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTC < SRR4302536.5657205/94‑1 (MQ=60)
ACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑TCCCGGGATGTC < SRR4302536.4853141/94‑1 (MQ=60)
ACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTC < SRR4302536.6712872/94‑1 (MQ=60)
GGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGT > SRR4302536.5117823/1‑94 (MQ=60)
GGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGT > SRR4302536.3465103/1‑94 (MQ=60)
GTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTT < SRR4302536.2666951/94‑1 (MQ=60)
GTGCTGGCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTT < SRR4302536.4552408/94‑1 (MQ=60)
GCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAG < SRR4302536.1174283/94‑1 (MQ=60)
GCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAG > SRR4302536.2219190/1‑94 (MQ=60)
TGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGAT < SRR4302536.1555164/94‑1 (MQ=60)
TGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGAT < SRR4302536.2226039/94‑1 (MQ=60)
TGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGAT > SRR4302536.19896/1‑94 (MQ=60)
TGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGGTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGAT > SRR4302536.1806674/1‑94 (MQ=60)
GTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATT < SRR4302536.6627522/94‑1 (MQ=60)
CGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTG < SRR4302536.4602583/94‑1 (MQ=60)
GTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGG > SRR4302536.4666738/1‑94 (MQ=60)
TCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTA > SRR4302536.5932890/1‑94 (MQ=60)
TCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTA > SRR4302536.5071943/1‑94 (MQ=60)
TCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTA < SRR4302536.3688384/94‑1 (MQ=60)
CATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAG < SRR4302536.2392218/94‑1 (MQ=60)
CATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAG > SRR4302536.2045932/1‑94 (MQ=60)
CATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAG < SRR4302536.605313/94‑1 (MQ=60)
ATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGG > SRR4302536.1701141/1‑94 (MQ=60)
ATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGG < SRR4302536.1603413/94‑1 (MQ=60)
TACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑ACCCGGGATGTCGTTAGATTTGGTAGGT > SRR4302536.5527707/1‑94 (MQ=60)
ACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTA > SRR4302536.1510052/1‑94 (MQ=60)
CGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACC < SRR4302536.629526/94‑1 (MQ=60)
GACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCT > SRR4302536.3169889/1‑94 (MQ=60)
GACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCT > SRR4302536.3406245/1‑94 (MQ=60)
ACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCGGCGTCAAATG‑CCCCGGGATGTCGTGAGATTTGGTAGGTACCTG < SRR4302536.2008432/94‑1 (MQ=60)
ACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTG > SRR4302536.3808760/1‑94 (MQ=60)
GATCAGCCAATGTTTAACTTCCGGATGTTGAACCCGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGAT > SRR4302536.5994949/1‑94 (MQ=60)
ATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATA > SRR4302536.5504897/1‑94 (MQ=60)
GCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATT > SRR4302536.5497279/1‑94 (MQ=60)
CCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTTATAAATTT > SRR4302536.1987518/1‑94 (MQ=60)
CCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTT < SRR4302536.3119738/94‑1 (MQ=60)
CCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTT > SRR4302536.2580295/1‑94 (MQ=60)
CAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTG > SRR4302536.3799572/1‑94 (MQ=60)
AATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGT > SRR4302536.5577455/1‑94 (MQ=60)
AATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGT < SRR4302536.2068099/94‑1 (MQ=60)
ATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTT > SRR4302536.5797977/1‑94 (MQ=60)
ATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTT < SRR4302536.2733860/94‑1 (MQ=60)
ATGTGTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTT < SRR4302536.2511916/94‑1 (MQ=60)
GTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTT < SRR4302536.2976243/94‑1 (MQ=60)
TTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTT > SRR4302536.3609891/1‑94 (MQ=60)
TTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTC > SRR4302536.2573782/1‑94 (MQ=60)
TAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCC > SRR4302536.342842/1‑94 (MQ=60)
AACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCG < SRR4302536.4072014/94‑1 (MQ=60)
ACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGG < SRR4302536.6074506/94‑1 (MQ=60)
CTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGG < SRR4302536.6665436/94‑1 (MQ=60)
CTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGG > SRR4302536.2474487/1‑94 (MQ=60)
CTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGG < SRR4302536.3122177/94‑1 (MQ=60)
CTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGG > SRR4302536.3885574/1‑94 (MQ=60)
TCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAA < SRR4302536.3666128/94‑1 (MQ=60)
TGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCC < SRR4302536.6653622/94‑1 (MQ=60)
GGATGTTGAACCGGCATTGAGTTGGCAGCGTCAAATG‑CGCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCC > SRR4302536.6709150/1‑94 (MQ=60)
GGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCC > SRR4302536.6214335/1‑94 (MQ=60)
GATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTTCGGGAATCCG > SRR4302536.5793686/1‑94 (MQ=60)
TGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGC > SRR4302536.1316613/1‑94 (MQ=60)
GTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCC > SRR4302536.5866908/1‑94 (MQ=60)
GTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCC < SRR4302536.1646208/94‑1 (MQ=60)
TGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGC > SRR4302536.6776830/1‑94 (MQ=60)
GACCAACATTGAGTTGGCAGCCTCAAATG‑CCCCGGGATGTGGTTAGGTTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTT < SRR4302536.5540407/94‑1 (MQ=60)
AACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTT > SRR4302536.3889439/1‑94 (MQ=60)
AACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTT < SRR4302536.3515750/94‑1 (MQ=60)
ACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTT < SRR4302536.6710571/94‑1 (MQ=60)
CCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTC < SRR4302536.6757274/94‑1 (MQ=60)
CAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCA > SRR4302536.6008215/1‑94 (MQ=60)
CAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCA > SRR4302536.1846358/1‑94 (MQ=60)
AGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAG > SRR4302536.3104165/1‑94 (MQ=60)
AGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAG > SRR4302536.5978943/1‑94 (MQ=60)
AGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCAGCTTTCAG > SRR4302536.1692188/1‑94 (MQ=60)
CATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCG < SRR4302536.2021226/94‑1 (MQ=60)
TTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCA < SRR4302536.2371347/94‑1 (MQ=60)
TGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCAT > SRR4302536.2332289/1‑94 (MQ=60)
GAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATC < SRR4302536.5234358/94‑1 (MQ=60)
TTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCAT < SRR4302536.712856/94‑1 (MQ=60)
TGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATA > SRR4302536.5207454/1‑94 (MQ=60)
TGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATA > SRR4302536.3005013/1‑94 (MQ=60)
GGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAG < SRR4302536.6335945/94‑1 (MQ=60)
GGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAG < SRR4302536.101713/94‑1 (MQ=60)
CAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGAT < SRR4302536.2227415/94‑1 (MQ=60)
CAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGAT < SRR4302536.3744277/94‑1 (MQ=60)
CAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGAT > SRR4302536.934108/1‑94 (MQ=60)
AGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATC > SRR4302536.686615/1‑94 (MQ=60)
CGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCC < SRR4302536.2145555/94‑1 (MQ=60)
CGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCC > SRR4302536.3965461/1‑94 (MQ=60)
GTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCG > SRR4302536.96556/1‑94 (MQ=60)
GTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCG < SRR4302536.627373/94‑1 (MQ=60)
CAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTA < SRR4302536.1009857/94‑1 (MQ=60)
CAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCACGTA > SRR4302536.6039763/1‑94 (MQ=60)
AATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGT > SRR4302536.3940489/1‑94 (MQ=60)
ATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTA < SRR4302536.6864998/94‑1 (MQ=60)
gcgCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTGCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACG < SRR4302536.4330689/91‑1 (MQ=60)
GCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACG < SRR4302536.6614183/94‑1 (MQ=60)
GCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACG < SRR4302536.698395/94‑1 (MQ=60)
GCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACG < SRR4302536.835403/94‑1 (MQ=60)
CCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGC > SRR4302536.4088295/1‑94 (MQ=60)
CCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGCG < SRR4302536.5699457/94‑1 (MQ=60)
CCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGCG < SRR4302536.4459444/94‑1 (MQ=60)
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CCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGCG > NC_000913/1983451‑1983635
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
