Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,013,946 |
G→A |
Q26Q (CAG→CAA) |
fliH → |
FliH |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,013,946 | 0 | G | A | 97.6%
| 426.3
/ ‑3.0
| 124 | Q26Q (CAG→CAA) | fliH | FliH |
| Reads supporting (aligned to +/- strand): ref base G (2/1); new base A (60/61); total (62/62) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 |
Only 100 of 128 total aligned reads displayed.
GCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAGGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAAT > NC_000913/2013857‑2014035
|
gagaTGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCaga < 1:1067130/93‑1 (MQ=255)
gagaTGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCaga > 2:429726/1‑93 (MQ=255)
gagaTGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCaga > 1:1957852/1‑93 (MQ=255)
agaTGGTAATTGGCAGCGGCGAGGATACCTATGTCGGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCagag > 1:837363/1‑93 (MQ=255)
gaTGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGt > 1:4266829/1‑93 (MQ=255)
aTGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGtt < 2:1037846/93‑1 (MQ=255)
tGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGttt < 1:2432689/93‑1 (MQ=255)
ggTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTtg < 2:1390095/93‑1 (MQ=255)
ggTAATTGGCAGCGGCGAAGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTtg > 1:2452452/1‑93 (MQ=255)
gTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTtgt < 2:225556/93‑1 (MQ=255)
gTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTtgt < 1:4518551/93‑1 (MQ=255)
tAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTtgtg > 1:2614370/1‑93 (MQ=255)
aTTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGcc < 1:2176072/93‑1 (MQ=255)
aTTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGcc < 1:4563310/93‑1 (MQ=255)
ttGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGccc > 2:3461712/1‑93 (MQ=255)
ggCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCAt < 1:1565251/93‑1 (MQ=255)
cgcggcgAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGt < 1:1788607/92‑1 (MQ=255)
aGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGt < 2:2764747/93‑1 (MQ=255)
aGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGt < 2:3201097/93‑1 (MQ=255)
gcggcgAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTc > 1:2256185/1‑93 (MQ=255)
ggcgAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCgg > 2:3341964/1‑92 (MQ=255)
ggcgAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGa < 1:3121124/93‑1 (MQ=255)
gcgAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAg < 2:1170833/93‑1 (MQ=255)
cgAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGc < 1:1299538/93‑1 (MQ=255)
gAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGcc > 2:1758925/1‑93 (MQ=255)
aGGATGCCTATGTCTGATACTCTGCCGTGGAACACCTGGACGCCGGACGTTCTCGCGCCACCACAGGCAGAGTTTGTGCCCATAGTCGGGCCg < 2:3609250/93‑1 (MQ=255)
aGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCg > 2:2964959/1‑93 (MQ=255)
aGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCg > 1:1061865/1‑93 (MQ=255)
aGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCg > 1:2287969/1‑93 (MQ=255)
gATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGga > 2:1757651/1‑93 (MQ=255)
aCCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGgaaga > 2:201859/1‑93 (MQ=255)
aCCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGgaaga > 1:2383825/1‑93 (MQ=255)
cTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGaaa > 1:1088720/1‑93 (MQ=255)
cTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGaaa < 2:1673638/93‑1 (MQ=255)
cTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGaaa > 1:52857/1‑93 (MQ=255)
tATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAAc > 2:866804/1‑93 (MQ=255)
tATGTCTGATAATCTGCAGTGGAAAACCTGGACGCCGGACGATCTCGCGCCTCGACAGGCAGAGATTGAGCCCATAGTAGAGCCGGAAGCAAc > 2:2765103/1‑93 (MQ=255)
aaTGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAAc < 1:2138140/92‑1 (MQ=255)
tGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACca > 1:2846575/1‑93 (MQ=255)
tGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACca > 1:2242118/1‑93 (MQ=255)
tGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATATCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACca > 2:1281635/1‑93 (MQ=255)
gTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcat > 1:488647/1‑93 (MQ=255)
gTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcat > 1:488648/1‑93 (MQ=255)
gTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcat < 2:2639153/93‑1 (MQ=255)
tCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcatc < 2:3402641/93‑1 (MQ=255)
tCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcatc > 2:4183240/1‑93 (MQ=255)
tCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcatc < 2:568748/93‑1 (MQ=255)
tGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAGGCAGAGTTTGTGCCCATAGACGAGCCGGAAGAAACcatcat > 1:3995917/1‑93 (MQ=255)
tGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcatcat > 2:1822329/1‑93 (MQ=255)
gATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCTCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCAtt > 1:3623875/1‑93 (MQ=255)
gATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCAtt > 1:259800/1‑93 (MQ=255)
aaTCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGaa > 2:3131698/1‑93 (MQ=255)
aaTCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGaa > 2:2512039/1‑93 (MQ=255)
tCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAaga > 2:4620046/1‑93 (MQ=255)
tCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAaga < 1:3609702/93‑1 (MQ=255)
tCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAaga < 1:2307691/93‑1 (MQ=255)
cTGCCGTGGAAAACCTGGACGCCGGACGAACTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAagag < 2:1703111/93‑1 (MQ=255)
tGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAgg > 1:947834/1‑93 (MQ=255)
tGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAgg > 1:2835583/1‑93 (MQ=255)
cgCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAgg < 2:3534172/92‑1 (MQ=255)
gCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGc < 1:866606/93‑1 (MQ=255)
gTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGa > 1:1769486/1‑93 (MQ=255)
gTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGa < 1:1644149/93‑1 (MQ=255)
tGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGaa > 1:3775076/1‑93 (MQ=255)
gAAAACCTGGACGCCGGACGATCTCGCGCCACCACAATCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAAcc > 2:3479981/1‑93 (MQ=255)
gAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAAcc > 2:1389823/1‑93 (MQ=255)
gAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAAcc > 1:3464317/1‑93 (MQ=255)
aaaCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCa < 1:3779049/93‑1 (MQ=255)
aaaCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCa > 2:676911/1‑93 (MQ=255)
aaaCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCa < 2:838795/93‑1 (MQ=255)
aaCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAg < 2:3121880/93‑1 (MQ=255)
aCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGc < 1:3386147/93‑1 (MQ=255)
cTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCt < 2:2154870/93‑1 (MQ=255)
ggACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTg < 2:54090/93‑1 (MQ=255)
ggACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTg > 1:3772748/1‑93 (MQ=255)
aCGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGag < 2:4580393/93‑1 (MQ=255)
gcgggACGACCTCGCGCCACCACAAGCAGAGTTTGTGCCCAAAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGagca < 2:1246444/90‑1 (MQ=255)
gCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGagca < 1:464091/93‑1 (MQ=255)
gCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGagca > 1:1565359/1‑93 (MQ=255)
ggACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAgcagca > 1:4320476/1‑93 (MQ=255)
aCGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAAc < 2:412157/93‑1 (MQ=255)
cGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACt < 2:3523393/93‑1 (MQ=255)
gATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTg < 2:2112828/93‑1 (MQ=255)
gATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTg < 2:2085047/93‑1 (MQ=255)
gATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTg < 2:263176/93‑1 (MQ=255)
tctcGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGgc > 1:40504/1‑93 (MQ=255)
gcgcCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCaa < 2:2233890/93‑1 (MQ=255)
cgcCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAAc < 1:1625757/93‑1 (MQ=255)
cgcCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAAc < 2:2059595/93‑1 (MQ=255)
gcCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACt < 2:834889/93‑1 (MQ=255)
ccaccaCAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGCACCCAGCCTTGAACAGCAACTGGCGCAACtc > 2:1201987/1‑92 (MQ=255)
ccaccaCAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTg > 2:2663913/1‑93 (MQ=255)
ccaccaCAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTg < 2:4720715/93‑1 (MQ=255)
caccacAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGc > 2:2719256/1‑93 (MQ=255)
accacAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCa > 1:4399248/1‑93 (MQ=255)
accacAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCa > 2:1024501/1‑93 (MQ=255)
accacAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCa > 1:875939/1‑93 (MQ=255)
cacaGGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCaaa > 2:3995363/1‑93 (MQ=255)
cacaAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCaaa < 1:3362656/93‑1 (MQ=255)
acaAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAAt < 2:4050631/93‑1 (MQ=255)
|
GCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAGGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAAT > NC_000913/2013857‑2014035
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTGGCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAGGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAATGCA > NC_000913/2013854‑2014038
|
CTGGCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAG > SRR4302544.3557054/1‑94 (MQ=60)
CGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGA > SRR4302544.1976844/1‑94 (MQ=60)
GAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAG < SRR4302544.1077742/94‑1 (MQ=60)
GAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCGGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAG > SRR4302544.845616/1‑94 (MQ=60)
AGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGT > SRR4302544.4310378/1‑94 (MQ=60)
TGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTG < SRR4302544.2455867/94‑1 (MQ=60)
TGGTAATTGGCAGCGGCGAAGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTG > SRR4302544.2475846/1‑94 (MQ=60)
GTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTG < SRR4302544.4563802/94‑1 (MQ=60)
GTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTG > SRR4302544.2639470/1‑94 (MQ=60)
ATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCC < SRR4302544.2196688/94‑1 (MQ=60)
ATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCC < SRR4302544.4608808/94‑1 (MQ=60)
GGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATA < SRR4302544.1580772/94‑1 (MQ=60)
CAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGT > SRR4302544.527201/1‑94 (MQ=60)
CAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGT < SRR4302544.1723469/94‑1 (MQ=60)
CGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTC < SRR4302544.1806090/94‑1 (MQ=60)
AGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCCCCACAAGCAGAGTTTGTGCCCATAGTC > SRR4302544.3647371/1‑94 (MQ=60)
AGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTC > SRR4302544.2277415/1‑94 (MQ=60)
GGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAG < SRR4302544.3150792/94‑1 (MQ=60)
CGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCC < SRR4302544.1312322/94‑1 (MQ=60)
GAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCG > SRR4302544.1072421/1‑94 (MQ=60)
GAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCG > SRR4302544.2309541/1‑94 (MQ=60)
TACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGA > SRR4302544.2406398/1‑94 (MQ=60)
CCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGAGGATATCGCGCCACCACGAGAAGCGTTTGTGCGCATAGTCGAGCgggagacaa > SRR4302544.53396/1‑85 (MQ=60)
CCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAA > SRR4302544.1099546/1‑94 (MQ=60)
CCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAA > SRR4302544.53395/1‑94 (MQ=60)
AATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACC < SRR4302544.2158566/94‑1 (MQ=60)
ATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCA > SRR4302544.2263210/1‑94 (MQ=60)
ATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCA > SRR4302544.2874067/1‑94 (MQ=60)
TGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCAT > SRR4302544.493438/1‑94 (MQ=60)
TGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCAT > SRR4302544.493439/1‑94 (MQ=60)
CTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAGGCAGAGTTTGTGCCCATAGACGAGCCGGAAGAAACCATCAT > SRR4302544.4035691/1‑94 (MQ=60)
CTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCAT < SRR4302544.4675707/94‑1 (MQ=60)
TGATAATCTGCCGTGGAAACCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATT < SRR4302544.2282104/94‑1 (MQ=60)
TGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCTCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATT > SRR4302544.3659984/1‑94 (MQ=60)
TGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATT > SRR4302544.262551/1‑94 (MQ=60)
AATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAG < SRR4302544.3270633/94‑1 (MQ=60)
TCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAG < SRR4302544.3644922/94‑1 (MQ=60)
TCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAG < SRR4302544.2329504/94‑1 (MQ=60)
CTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGG > SRR4302544.957161/1‑94 (MQ=60)
CTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGG > SRR4302544.2862975/1‑94 (MQ=60)
GCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCT < SRR4302544.875181/94‑1 (MQ=60)
GCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCT < SRR4302544.2067545/94‑1 (MQ=60)
CCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTG < SRR4302544.1579973/94‑1 (MQ=60)
CGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGA < SRR4302544.4020935/94‑1 (MQ=60)
CGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGA > SRR4302544.1786804/1‑94 (MQ=60)
GTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAA > SRR4302544.3812490/1‑94 (MQ=60)
GTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAA < SRR4302544.1660359/94‑1 (MQ=60)
GGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACC > SRR4302544.3497365/1‑94 (MQ=60)
GAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCC < SRR4302544.242801/94‑1 (MQ=60)
AAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAG < SRR4302544.3816483/94‑1 (MQ=60)
ACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCC < SRR4302544.3418502/94‑1 (MQ=60)
CTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTT < SRR4302544.2782106/94‑1 (MQ=60)
TGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTG > SRR4302544.3810141/1‑94 (MQ=60)
CGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCA > SRR4302544.1580880/1‑94 (MQ=60)
GCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAG < SRR4302544.468646/94‑1 (MQ=60)
CGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCA > SRR4302544.4364484/1‑94 (MQ=60)
GACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAAC < SRR4302544.900995/94‑1 (MQ=60)
GATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGG > SRR4302544.4348149/1‑94 (MQ=60)
ATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGC > SRR4302544.40907/1‑94 (MQ=60)
CGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACT < SRR4302544.1641776/94‑1 (MQ=60)
CACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCA > SRR4302544.884628/1‑94 (MQ=60)
CACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCA > SRR4302544.4443713/1‑94 (MQ=60)
CACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAAT < SRR4302544.3394747/94‑1 (MQ=60)
ACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAATG > SRR4302544.847191/1‑94 (MQ=60)
AAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAATGCA < SRR4302544.3005517/94‑1 (MQ=60)
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CTGGCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAGGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAATGCA > NC_000913/2013854‑2014038
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
