Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,037,676 |
(C)5→6 |
coding (177/1005 nt) |
b1971 → |
putative reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,037,671 | 1 | . | C | 93.5%
| 226.2
/ 9.6
| 78 | coding (172/1005 nt) | b1971 | putative reductase |
| Reads supporting (aligned to +/- strand): ref base . (0/5); new base C (42/30); total (42/36) |
| Fisher's exact test for biased strand distribution p-value = 1.64e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.15e-01 |
ACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCG‑‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTT > NC_000913/2037583‑2037758
|
aCTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑cccg‑‑cccc > 2:4468539/1‑93 (MQ=255)
cgggCATCAGTGCACCTGCCCTTGCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑cccg‑‑cccccc < 2:1539808/92‑2 (MQ=255)
gggCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑cccg‑‑ccccccg > 2:1443492/1‑91 (MQ=255)
tCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGa > 2:2728668/1‑93 (MQ=255)
tCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGa > 1:647321/1‑93 (MQ=255)
aGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGaaa > 2:4186843/1‑93 (MQ=255)
aGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGaaa > 2:3725009/1‑93 (MQ=255)
aGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGaaa < 2:542106/93‑1 (MQ=255)
aGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGaaa > 1:973113/1‑93 (MQ=255)
aaCTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGT‑CCCCCGCCGGAAAAgcgc < 2:4513210/93‑1 (MQ=255)
aaCTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAgcgc > 1:4071945/1‑93 (MQ=255)
tGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTgg > 1:4384507/1‑93 (MQ=255)
tGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCG‑‑CCCCCGCCGGAAAAGCGCTGGa < 2:1094696/93‑1 (MQ=255)
cACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCG‑‑CCCCCGCCGGAAAAGCGCTGGAGt < 2:4532211/93‑1 (MQ=255)
ctttctttGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGtt > 2:87669/1‑93 (MQ=255)
tttctttGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTc < 1:34172/93‑1 (MQ=255)
ttctttGCCTCACGCTGCGCATGCCGATCTGTGTAGCTGGTTTAAAGGAAACGATCTCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCa < 2:3667867/93‑1 (MQ=255)
ttctttGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCa < 1:592560/93‑1 (MQ=255)
ttctttGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCa < 2:3667868/93‑1 (MQ=255)
ctttGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGc > 1:4589845/1‑93 (MQ=255)
ttGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCaa < 2:835653/93‑1 (MQ=255)
ttGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCaa < 1:3612862/93‑1 (MQ=255)
gCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGc > 2:4395140/1‑93 (MQ=255)
ccTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGcc < 2:4589845/93‑1 (MQ=255)
cTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCt < 2:3278718/93‑1 (MQ=255)
tCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTg > 2:851322/1‑93 (MQ=255)
cACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTgc < 1:3861626/93‑1 (MQ=255)
cACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTgc < 1:1475537/93‑1 (MQ=255)
aCGCTGCGGATGCCGATCTGGTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTgcc < 2:1180172/93‑1 (MQ=255)
gCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTgccgc > 1:4524610/1‑93 (MQ=255)
gCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTgccgc > 1:1756676/1‑93 (MQ=255)
tGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCt > 2:2301025/1‑93 (MQ=255)
gcgcATGCCGATCTGCTTCGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTg < 2:2967308/93‑1 (MQ=255)
gcgcATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTg > 1:4220571/1‑93 (MQ=255)
gcATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGc > 1:3797226/1‑93 (MQ=255)
aTGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCaa < 1:1181531/93‑1 (MQ=255)
tGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCaca > 2:2840132/1‑91 (MQ=255)
cGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATa > 1:4053232/1‑93 (MQ=255)
gATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATaa > 2:183103/1‑93 (MQ=255)
gATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATaa > 1:3818842/1‑93 (MQ=255)
gATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATaa > 2:684888/1‑93 (MQ=255)
gATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATaa > 2:684889/1‑93 (MQ=255)
gATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATaa > 1:4299643/1‑93 (MQ=255)
aTCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAc > 1:3195382/1‑93 (MQ=255)
tCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAcc < 2:2930920/93‑1 (MQ=255)
cTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCACGCCTGCCGCCTGGCAAAATAACCt > 1:551561/1‑93 (MQ=255)
cTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCt > 1:1950820/1‑93 (MQ=255)
cTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCCGGCAAAATAACCt > 1:564596/1‑93 (MQ=255)
tGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTg > 2:3379092/1‑93 (MQ=255)
gCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCG‑‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGcc < 2:1985752/93‑1 (MQ=255)
cTTAGCTGTTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAACATAACCTGct > 2:4260114/1‑92 (MQ=255)
cTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGcc > 2:2009985/1‑93 (MQ=255)
ttAGCGGGGTTTAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCa > 2:4226478/1‑93 (MQ=255)
tAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCAc < 2:3597761/93‑1 (MQ=255)
aGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCAc < 2:2140974/93‑1 (MQ=255)
aGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACt < 1:2371539/93‑1 (MQ=255)
gCTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTg < 1:1641922/93‑1 (MQ=255)
cTGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGa < 1:4019804/93‑1 (MQ=255)
tGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGAc > 1:1338690/1‑93 (MQ=255)
tGGTTTAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGAc < 2:3695191/93‑1 (MQ=255)
gTTGAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGc < 2:3098107/93‑1 (MQ=255)
tttAAAGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGcc > 1:2197005/1‑93 (MQ=255)
ttAAAGGGACCGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCca < 2:521527/93‑1 (MQ=255)
aaaGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCcagc > 2:4040299/1‑93 (MQ=255)
aaGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCcagca < 1:3343225/93‑1 (MQ=255)
aaGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCcagca < 1:1481011/93‑1 (MQ=255)
aGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCcagcag > 2:3594952/1‑93 (MQ=255)
aGGGAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCcagcag > 1:1360728/1‑93 (MQ=255)
aGGGAACGATCGCCCG‑CCCG‑‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGa < 1:3235118/93‑1 (MQ=255)
gggAGCGACCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAAGAACCTGCCACTGACGCCAGCAGa < 1:2403442/93‑1 (MQ=255)
gggACCGACCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGa < 1:2117548/93‑1 (MQ=255)
gAACGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATa > 1:3516961/1‑93 (MQ=255)
aCGAGCGCCCGCCCCC‑‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATaaa < 2:4241632/93‑1 (MQ=255)
aCGACCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATaaa < 2:918789/93‑1 (MQ=255)
cGATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAg < 1:1749710/93‑1 (MQ=255)
gATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGt > 1:2659282/1‑93 (MQ=255)
gATCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGt < 2:236319/93‑1 (MQ=255)
aTCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGtt > 2:1675549/1‑93 (MQ=255)
aTCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGtt > 2:3518201/1‑93 (MQ=255)
aTCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGtt > 2:1948826/1‑93 (MQ=255)
aTCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGtt < 2:1796140/93‑1 (MQ=255)
aTCGCCCG‑CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGtt > 2:1643800/1‑93 (MQ=255)
gcccccg‑cccg‑‑cccCCGCCGGAAAAGCGCGGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTc < 1:3905916/90‑1 (MQ=255)
gcccg‑cccgc‑ccCCCGCAGAAAAAGCGCGGGAGTTCAGCAAGCCTGCCGCCTGGCAAACTAACCTGCCACTGACGCCAGGAGATAAAGTTTcc < 2:42507/93‑1 (MQ=255)
ccccg‑cccgc‑ccCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTcc < 2:42506/92‑1 (MQ=255)
ccccg‑cccgc‑ccCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTcc < 2:2171700/92‑1 (MQ=255)
cccg‑cccgc‑ccCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCg < 1:950768/93‑1 (MQ=255)
ccg‑cccgc‑ccCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCgg > 1:3934888/1‑93 (MQ=255)
cg‑cccg‑‑cccCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGtt > 2:3893364/1‑93 (MQ=255)
cccccc‑‑cccccgccGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGtt < 1:133336/91‑1 (MQ=255)
|
ACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCG‑‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTT > NC_000913/2037583‑2037758
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAACT > NC_000913/2037586‑2037767
|
GGGCCTCAGTGCAACTGCCCTTTCTTTTCCTCACTCTGCGCCTGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑CCCCCcgc < SRR4302544.1510208/94‑4 (MQ=60)
CATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGG < SRR4302544.548997/94‑1 (MQ=60)
ATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGA > SRR4302544.653714/1‑94 (MQ=60)
CAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAA > SRR4302544.982657/1‑94 (MQ=60)
CAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGC > SRR4302544.4112469/1‑94 (MQ=60)
CTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGG > SRR4302544.4428903/1‑94 (MQ=60)
TTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCA < SRR4302544.34509/94‑1 (MQ=60)
TTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAG < SRR4302544.598378/94‑1 (MQ=60)
TCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGC > SRR4302544.4635522/1‑94 (MQ=60)
TTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAG < SRR4302544.3648285/94‑1 (MQ=60)
CACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCC < SRR4302544.1490135/94‑1 (MQ=60)
CACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCC < SRR4302544.3899965/94‑1 (MQ=60)
CGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGC > SRR4302544.4569894/1‑94 (MQ=60)
CGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGC > SRR4302544.1773869/1‑94 (MQ=60)
TGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTG > SRR4302544.4263330/1‑94 (MQ=60)
CGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGC > SRR4302544.3834830/1‑94 (MQ=60)
ATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAA < SRR4302544.1193290/94‑1 (MQ=60)
CCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATA > SRR4302544.4093598/1‑94 (MQ=60)
CGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAA > SRR4302544.3856700/1‑94 (MQ=60)
CGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAA > SRR4302544.4343517/1‑94 (MQ=60)
GATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAC > SRR4302544.3225833/1‑94 (MQ=60)
TCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCACGCCTGCCGCCTGGCAAAATAACCT > SRR4302544.556960/1‑94 (MQ=60)
TCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCT > SRR4302544.1969731/1‑94 (MQ=60)
TCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCCGGCAAAATAACCT > SRR4302544.570119/1‑94 (MQ=60)
AGCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTG < SRR4302544.2393980/94‑1 (MQ=60)
GCTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGA < SRR4302544.1658106/94‑1 (MQ=60)
CTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGAC > SRR4302544.1351910/1‑94 (MQ=60)
CTGGTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGAC < SRR4302544.4059808/94‑1 (MQ=60)
GTTTAAAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCC > SRR4302544.2217721/1‑94 (MQ=60)
AAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAG < SRR4302544.3375103/94‑1 (MQ=60)
AAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAG > SRR4302544.1374238/1‑94 (MQ=60)
AAGGGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAG < SRR4302544.1495646/94‑1 (MQ=60)
AGGGAACGATCGCCCGCCCG‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGAT < SRR4302544.3266086/94‑1 (MQ=60)
GGGAGCGACCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAAGAACCTGCCACTGACGCCAGCAGAT < SRR4302544.2426253/94‑1 (MQ=60)
GGGACCGACCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGAT < SRR4302544.2137885/94‑1 (MQ=60)
GGAACGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATA > SRR4302544.3550539/1‑94 (MQ=60)
CGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGT < SRR4302544.1766836/94‑1 (MQ=60)
CGATCGCCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGT > SRR4302544.2684786/1‑94 (MQ=60)
gccCCCGCCCG‑CCCCCGCCGGAAAAGCGCGGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCC < SRR4302544.3944724/91‑1 (MQ=60)
cccctcCCCG‑CCCCCGGCGAAAAAGCGCTGCAGTTCATCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCG < SRR4302544.3171050/88‑1 (MQ=60)
CCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGG > SRR4302544.3973965/1‑94 (MQ=60)
CCCGCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGG < SRR4302544.960116/94‑1 (MQ=60)
CCCCCC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTA < SRR4302544.134574/94‑1 (MQ=60)
ccccgcCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTA < SRR4302544.3294453/88‑1 (MQ=60)
GCCCGCCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTA > SRR4302544.3366034/1‑94 (MQ=60)
cgcCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAA > SRR4302544.573520/4‑94 (MQ=60)
gcCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAAT > SRR4302544.2513204/3‑94 (MQ=60)
C‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATA < SRR4302544.1580251/94‑1 (MQ=60)
CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAA > SRR4302544.4235027/1‑94 (MQ=60)
CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAA < SRR4302544.3229296/94‑1 (MQ=60)
CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAA > SRR4302544.1736339/1‑94 (MQ=60)
CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAA > SRR4302544.1426254/1‑94 (MQ=60)
CCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAACT < SRR4302544.2870689/94‑1 (MQ=60)
CCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAACT > SRR4302544.2341867/1‑94 (MQ=60)
|
GGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAACT > NC_000913/2037586‑2037767
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
