Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,078,857 |
T→C |
Y143C (TAC→TGC) |
sbmC ← |
SbmC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,078,857 | 0 | T | C | 99.4%
| 553.5
/ NA
| 174 | Y143C (TAC→TGC) | sbmC | SbmC |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (77/96); total (78/96) |
| Fisher's exact test for biased strand distribution p-value = 4.48e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 175 total aligned reads displayed.
AAAAAAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGTACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAG > NC_000913/2078767‑2078946
|
aaaaaaaGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCAc > 1:2516761/1‑93 (MQ=255)
aaaGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCAt > 2:2688908/1‑93 (MQ=255)
agagTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCt < 1:887907/93‑1 (MQ=255)
agagTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCt > 1:1532309/1‑93 (MQ=255)
agagTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCt > 1:3092129/1‑93 (MQ=255)
agTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTc < 1:4336837/93‑1 (MQ=255)
agTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTc < 2:2606606/93‑1 (MQ=255)
gTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGTTATCCCAGCACCCATCTTcc > 1:3523291/1‑93 (MQ=255)
gTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTcc > 1:1134373/1‑93 (MQ=255)
gTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTcc < 2:353636/93‑1 (MQ=255)
gTGGGCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCGCCCATCTTcc < 1:899693/93‑1 (MQ=255)
tGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGTACCCATCTTCcg > 1:4713037/1‑93 (MQ=255)
cATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGcc < 1:2447884/93‑1 (MQ=255)
aTCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCa < 2:377403/93‑1 (MQ=255)
aTCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCa > 2:578154/1‑93 (MQ=255)
aTCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCa > 1:367100/1‑93 (MQ=255)
tCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCAt < 2:2727031/93‑1 (MQ=255)
tCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCAt < 2:1773587/93‑1 (MQ=255)
tCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCAt > 2:2491812/1‑93 (MQ=255)
tCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCAt < 1:955120/93‑1 (MQ=255)
gcgTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTg < 2:2104180/93‑1 (MQ=255)
cgTTAACACACCGCCCTGAGATGGATTAGTGATGGTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGt < 1:2501314/93‑1 (MQ=255)
cgTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGt < 2:804307/93‑1 (MQ=255)
ttAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTc < 2:1966112/93‑1 (MQ=255)
ttAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTc > 1:640539/1‑93 (MQ=255)
ttAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTc < 2:1227830/93‑1 (MQ=255)
ttAACACACCGCACTAAGATGAATTAGTGATGTTTTGGCGGCACCGCAACATCCATTTCGATATCCCAGCGCCCATCTTCCGCGCCATTGTTc < 2:2667247/93‑1 (MQ=255)
ttAACACACCCCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTc < 2:2667246/93‑1 (MQ=255)
tAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCa < 1:3707957/93‑1 (MQ=255)
aaCACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCaa < 2:2031476/93‑1 (MQ=255)
acacCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATa > 2:1692853/1‑93 (MQ=255)
acCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATaaa > 2:516775/1‑93 (MQ=255)
acCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATaaa > 1:4112191/1‑93 (MQ=255)
ccGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAAc > 2:981181/1‑93 (MQ=255)
cGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAAcc < 1:337269/93‑1 (MQ=255)
cGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAAcc < 2:3401178/93‑1 (MQ=255)
gCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCt < 2:2237196/93‑1 (MQ=255)
gCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCt < 2:413450/93‑1 (MQ=255)
cgccTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCt < 2:1932454/91‑1 (MQ=255)
gagaTGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGacg > 1:1614325/1‑91 (MQ=255)
agaTGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGc > 2:1218448/1‑93 (MQ=255)
agaTGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGc < 1:148261/93‑1 (MQ=255)
gaTGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCa < 2:79594/93‑1 (MQ=255)
aTGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAg > 1:1746573/1‑93 (MQ=255)
aTGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAg < 2:3067018/93‑1 (MQ=255)
gAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAggg < 2:2473654/93‑1 (MQ=255)
aaTTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGc > 1:2282108/1‑93 (MQ=255)
aaTTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGc < 1:3121894/93‑1 (MQ=255)
aaTTAGTGATGTTTTGGCTGAACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATCGTTCAAATAAACCTCGAAGCAggga > 2:707601/1‑92 (MQ=255)
aTTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCt > 1:3830449/1‑93 (MQ=255)
aTTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCt > 2:1178624/1‑93 (MQ=255)
aTTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCt > 2:3316321/1‑93 (MQ=255)
tAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCttt < 2:4269581/93‑1 (MQ=255)
aGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTg < 1:4563912/93‑1 (MQ=255)
tGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGt > 2:755572/1‑93 (MQ=255)
tGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGt > 2:4369096/1‑93 (MQ=255)
gATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTa > 1:1941315/1‑93 (MQ=255)
aTGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTaa < 2:4046401/93‑1 (MQ=255)
tGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAAc < 1:2403222/93‑1 (MQ=255)
gTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAACCCTCGAAGCAGGGCTTTGGTAACa < 2:3186421/93‑1 (MQ=255)
tGGCTGCCCCGCAACATTCATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTc < 1:4038034/93‑1 (MQ=255)
ggCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCa < 2:1626330/93‑1 (MQ=255)
gCTGCCCCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCAt < 1:1303621/93‑1 (MQ=255)
gCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCAt > 2:3919000/1‑93 (MQ=255)
gCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCAt < 1:367037/93‑1 (MQ=255)
tGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATaa > 2:1732962/1‑93 (MQ=255)
tGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATaa > 2:120153/1‑93 (MQ=255)
gCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAg > 2:3090583/1‑93 (MQ=255)
gCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTg > 2:3091916/1‑93 (MQ=255)
gCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTg > 2:2952881/1‑93 (MQ=255)
cAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGt > 1:1669227/1‑93 (MQ=255)
cAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGt < 2:1101395/93‑1 (MQ=255)
cAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATCTCATAAGCACTGt > 2:1863179/1‑93 (MQ=255)
aaCATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTc < 2:1519838/93‑1 (MQ=255)
aaCATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTc > 2:3502358/1‑93 (MQ=255)
acatacatTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTcc > 1:712419/1‑93 (MQ=255)
acatacatTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTcc < 2:1126698/93‑1 (MQ=255)
acatacatTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTcc < 2:3890327/93‑1 (MQ=255)
acatacatTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTcc < 2:1891105/93‑1 (MQ=255)
catacatTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCt > 2:4733842/1‑93 (MQ=255)
catacatTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCt > 1:1691139/1‑93 (MQ=255)
catacatTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCt < 1:1524379/93‑1 (MQ=255)
atacatTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTg < 1:2984123/93‑1 (MQ=255)
tacatTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGc > 1:593424/1‑93 (MQ=255)
tacatTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGc < 2:4531200/93‑1 (MQ=255)
tacatTTCGATATCCCAGCACCCATCTTCCGCGCCATTGCTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGc > 2:908391/1‑93 (MQ=255)
catTTCTATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCaa < 1:1075270/93‑1 (MQ=255)
catTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCaa < 2:1546864/93‑1 (MQ=255)
tttCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAaga < 2:279014/93‑1 (MQ=255)
tttCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAaga < 2:279013/93‑1 (MQ=255)
tttCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAaga > 1:2789583/1‑93 (MQ=255)
tttCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAaga < 1:820301/93‑1 (MQ=255)
tCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAgaga < 2:2037538/93‑1 (MQ=255)
tCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAgaga < 1:4470950/93‑1 (MQ=255)
cGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGAc < 2:2460785/93‑1 (MQ=255)
cGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGAc > 1:2811866/1‑93 (MQ=255)
gATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACt < 1:2667675/93‑1 (MQ=255)
cccAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTaa < 1:3891216/93‑1 (MQ=255)
cccAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTaa < 1:394179/93‑1 (MQ=255)
cccAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTaa > 1:62792/1‑93 (MQ=255)
|
AAAAAAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGTACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAG > NC_000913/2078767‑2078946
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAAAAAAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGTACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAGAACT > NC_000913/2078766‑2078950
|
AAAAAAAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCAC > SRR4302544.2540929/1‑94 (MQ=60)
AAAAAAAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCAC > SRR4302544.373717/1‑94 (MQ=60)
AAAAAAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACC > SRR4302544.4086075/1‑94 (MQ=60)
AAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATC < SRR4302544.1370452/94‑1 (MQ=60)
AAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCT > SRR4302544.3121584/1‑94 (MQ=60)
AAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCT > SRR4302544.1547523/1‑94 (MQ=60)
AGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTT < SRR4302544.896709/94‑1 (MQ=60)
AGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTT > SRR4302544.3876163/1‑94 (MQ=60)
AGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGTTATCCCAGCACCCATCTTCC > SRR4302544.3556951/1‑94 (MQ=60)
AGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCC > SRR4302544.1145662/1‑94 (MQ=60)
AGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCC < SRR4302544.4380974/94‑1 (MQ=60)
GTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGTACCCATCTTCCG > SRR4302544.4759597/1‑94 (MQ=60)
GTGGGCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCGCCCATCTTCCG < SRR4302544.908596/94‑1 (MQ=60)
GTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGC > SRR4302544.1633998/1‑94 (MQ=60)
GTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGC > SRR4302544.4768570/1‑94 (MQ=60)
TCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCC < SRR4302544.645933/94‑1 (MQ=60)
CATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCA > SRR4302544.370854/1‑94 (MQ=60)
CATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCA > SRR4302544.2068398/1‑94 (MQ=60)
CATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCA < SRR4302544.2471232/94‑1 (MQ=60)
TCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATT < SRR4302544.2899747/94‑1 (MQ=60)
TCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATT < SRR4302544.964508/94‑1 (MQ=60)
TCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATT < SRR4302544.1222169/94‑1 (MQ=60)
CGTTAACACACCGCCCTGAGATGGATTAGTGATGGTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTT < SRR4302544.2525288/94‑1 (MQ=60)
CGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTT < SRR4302544.250527/94‑1 (MQ=60)
GTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTC > SRR4302544.646854/1‑94 (MQ=60)
TTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCA < SRR4302544.74168/94‑1 (MQ=60)
TAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAA < SRR4302544.3744847/94‑1 (MQ=60)
CACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAA > SRR4302544.4153058/1‑94 (MQ=60)
ACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAAC > SRR4302544.1699883/1‑94 (MQ=60)
CGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCT < SRR4302544.340770/94‑1 (MQ=60)
CCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGA > SRR4302544.907862/1‑94 (MQ=60)
CTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAA > SRR4302544.3670393/1‑94 (MQ=60)
TGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGACG > SRR4302544.1630239/1‑94 (MQ=60)
TGAGATGAATTAGTGATGCTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAG < SRR4302544.3536401/94‑1 (MQ=60)
AGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCA > SRR4302544.2668757/1‑94 (MQ=60)
AGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCA < SRR4302544.149676/94‑1 (MQ=60)
GATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAG > SRR4302544.1763674/1‑94 (MQ=60)
GATGAATTAGGGATGGTTTGGCTGCGCCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAG < SRR4302544.253436/94‑1 (MQ=60)
GAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGC > SRR4302544.2303608/1‑94 (MQ=60)
AATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCT > SRR4302544.3868431/1‑94 (MQ=60)
AATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCT < SRR4302544.3151568/94‑1 (MQ=60)
AGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGG < SRR4302544.4609420/94‑1 (MQ=60)
AGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGG > SRR4302544.3228754/1‑94 (MQ=60)
AGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGG > SRR4302544.2827586/1‑94 (MQ=60)
TGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTA > SRR4302544.1960102/1‑94 (MQ=60)
ATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAAC < SRR4302544.4531923/94‑1 (MQ=60)
TGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACA < SRR4302544.2426028/94‑1 (MQ=60)
TTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTC < SRR4302544.1517488/94‑1 (MQ=60)
TGGCTGCCCCGCAACATTCATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCA < SRR4302544.4078244/94‑1 (MQ=60)
GCTGCCCCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATA < SRR4302544.1316436/94‑1 (MQ=60)
GCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATA < SRR4302544.370790/94‑1 (MQ=60)
CTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAA < SRR4302544.3761228/94‑1 (MQ=60)
GCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGC < SRR4302544.307365/94‑1 (MQ=60)
CACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCA > SRR4302544.4232639/1‑94 (MQ=60)
CCCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCAC < SRR4302544.3999804/94‑1 (MQ=60)
GCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGT > SRR4302544.1685670/1‑94 (MQ=60)
AACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCC > SRR4302544.719477/1‑94 (MQ=60)
AACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCC > SRR4302544.1882806/1‑94 (MQ=60)
ACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCT > SRR4302544.1707825/1‑94 (MQ=60)
CATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTG < SRR4302544.2337001/94‑1 (MQ=60)
CATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTG < SRR4302544.1539507/94‑1 (MQ=60)
ATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGC > SRR4302544.599249/1‑94 (MQ=60)
ATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGC < SRR4302544.3012740/94‑1 (MQ=60)
CATTTCTATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAG < SRR4302544.1085962/94‑1 (MQ=60)
ATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGA > SRR4302544.2816440/1‑94 (MQ=60)
TTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAG < SRR4302544.828321/94‑1 (MQ=60)
TTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAG < SRR4302544.933594/94‑1 (MQ=60)
TCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGAC < SRR4302544.4515912/94‑1 (MQ=60)
TCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGAC > SRR4302544.2839002/1‑94 (MQ=60)
GATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTA < SRR4302544.2693246/94‑1 (MQ=60)
TATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAACCCTCGAAGCAGGGCTTTGTTAACATTTCATAAGCACTGTCCTGCAAGAGACTATT < SRR4302544.4735543/94‑1 (MQ=60)
TATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATT > SRR4302544.1623119/1‑94 (MQ=60)
TCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAA > SRR4302544.63431/1‑94 (MQ=60)
CCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAA < SRR4302544.64738/94‑1 (MQ=60)
CCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAA < SRR4302544.398176/94‑1 (MQ=60)
CCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAA < SRR4302544.3929868/94‑1 (MQ=60)
AGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAGAA > SRR4302544.2065076/1‑94 (MQ=60)
CACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAGAACT < SRR4302544.4272575/94‑1 (MQ=60)
CACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAGAACT < SRR4302544.4021258/94‑1 (MQ=60)
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AAAAAAAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGTACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAGAACT > NC_000913/2078766‑2078950
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
