Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,092,192 |
A→G |
T235A (ACC→GCC) |
b2022 → |
imidazoleglycerolphosphate dehydratase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,092,192 | 0 | A | G | 98.5%
| 423.5
/ ‑4.9
| 134 | T235A (ACC→GCC) | b2022 | imidazoleglycerolphosphate dehydratase |
| Reads supporting (aligned to +/- strand): ref base A (0/2); new base G (66/66); total (66/68) |
| Fisher's exact test for biased strand distribution p-value = 4.96e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 141 total aligned reads displayed.
CTGGATCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATACCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCGATGGACGAAT > NC_000913/2092102‑2092282
|
cTGGATCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGcc < 2:1569656/93‑1 (MQ=255)
cTGGATCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGcc < 1:1499572/93‑1 (MQ=255)
tGGATCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCg > 1:2933723/1‑93 (MQ=255)
tGGATCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCg > 2:1064855/1‑93 (MQ=255)
tGGATCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCg < 1:2300812/93‑1 (MQ=255)
cggATCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCg < 2:4015685/92‑1 (MQ=255)
ggATCAGATCGCTACCCACGGCGGTTTCCGCATGGCAATCAACGTCAAAGGCGACCTCTCTATCGACGATCACCACACCGCCGCGGATGCCgc > 1:3394400/1‑92 (MQ=255)
aTCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCGAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGcc > 1:4711460/1‑93 (MQ=255)
aTCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGcc < 1:2477752/93‑1 (MQ=255)
tCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCt > 2:3066700/1‑93 (MQ=255)
tCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCt < 1:2090669/93‑1 (MQ=255)
cAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTg < 1:2101547/93‑1 (MQ=255)
aGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTgg > 1:2491024/1‑93 (MQ=255)
aTCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCAGGCCTGgcg > 2:1415818/1‑93 (MQ=255)
tCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGgcgc < 1:3890562/93‑1 (MQ=255)
tCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGgcgc > 1:3040164/1‑93 (MQ=255)
tCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGgcgc > 2:929112/1‑93 (MQ=255)
tCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGgcgc < 2:4713893/93‑1 (MQ=255)
gCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTg < 2:1163784/93‑1 (MQ=255)
gCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTg > 2:4595548/1‑93 (MQ=255)
gCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTg > 1:1119247/1‑93 (MQ=255)
cTACCCACGGGGGGTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTgg < 2:3925514/93‑1 (MQ=255)
cTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTgg > 2:4173755/1‑93 (MQ=255)
cTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTgg > 2:1886364/1‑93 (MQ=255)
aCCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGc < 2:3143489/93‑1 (MQ=255)
ccACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATCTCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCgc > 2:3662563/1‑92 (MQ=255)
ccACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGa > 2:2441205/1‑93 (MQ=255)
ccACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGa < 2:4495646/93‑1 (MQ=255)
ccACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGCCGCTGGGCGa > 2:3662564/1‑93 (MQ=255)
cACGGCGGTTTCAGCATAGAAATCAACGTCAAAGGCGACCTCTATATAGACGATCACCACACCGTCGAAGATGCCGACCTGGCGCTGGGCGaa < 2:4206128/93‑1 (MQ=255)
ccggcggTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAg < 2:1821465/92‑1 (MQ=255)
cggcggTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAgc < 2:876967/93‑1 (MQ=255)
cggcggGTTCCGCATGGAAATCAACGTCCAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAgc < 1:974314/93‑1 (MQ=255)
gcggTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAgcgc < 2:1210699/93‑1 (MQ=255)
gcggTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAgcgc < 1:3582124/93‑1 (MQ=255)
ggTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTa > 2:4743905/1‑93 (MQ=255)
gTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTaa > 1:297806/1‑93 (MQ=255)
tttCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTaaa > 2:3277298/1‑93 (MQ=255)
tttCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTaaa > 2:162688/1‑93 (MQ=255)
ttCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTaaaa > 1:4093048/1‑93 (MQ=255)
ttCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTaaaa > 2:1796258/1‑93 (MQ=255)
cGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATc > 2:3201491/1‑93 (MQ=255)
gCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCg > 2:3090655/1‑93 (MQ=255)
aTGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGcc < 1:2824794/93‑1 (MQ=255)
tGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGccc < 1:4741440/93‑1 (MQ=255)
ggAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCt < 1:1280679/93‑1 (MQ=255)
aaaTCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCg < 1:3852188/93‑1 (MQ=255)
aaTCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCgg > 1:1526730/1‑93 (MQ=255)
aTCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGga > 1:3612121/1‑93 (MQ=255)
aTCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGga > 2:260076/1‑93 (MQ=255)
tCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCggtg > 1:3681985/1‑91 (MQ=255)
aaCGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGCAGATGCCGGCCTGGCGCTGTGCGAAGCGCTAAAAATCGCCCTCGGAGAc > 1:2733144/1‑93 (MQ=255)
aaCGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGCAGCGCTAAAAATCGCCCTCGGAGAc > 2:2685608/1‑93 (MQ=255)
aaCGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGAc < 2:4708166/93‑1 (MQ=255)
cGTCAAAGGCGACCTCTATATCGACGATCACCACGCCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACaa < 2:3261459/93‑1 (MQ=255)
gTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACaaa > 1:1819638/1‑93 (MQ=255)
tCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGagacagac > 1:635999/1‑93 (MQ=255)
tCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAAc < 2:2322063/93‑1 (MQ=255)
aaGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAAcgcg > 1:1302963/1‑93 (MQ=255)
aGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCgg < 2:2217949/93‑1 (MQ=255)
aGGCGACCACTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCgg < 1:3968302/93‑1 (MQ=255)
ggCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGt < 2:708695/93‑1 (MQ=255)
gACCTCTATATCGACGATCACCACACCGTCGAAGATGCCTGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTagt > 2:2069459/1‑91 (MQ=255)
gACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTAtt < 2:859883/93‑1 (MQ=255)
gACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGATGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTAtt > 1:33214/1‑93 (MQ=255)
ctctATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGc > 2:3377549/1‑93 (MQ=255)
tctATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGcc < 2:4190805/93‑1 (MQ=255)
tctATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGcc > 2:2559567/1‑93 (MQ=255)
atatCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCt > 2:2575999/1‑93 (MQ=255)
atCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCttt < 2:1420550/93‑1 (MQ=255)
atCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCttt < 1:894232/93‑1 (MQ=255)
atCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCttt < 2:2200077/93‑1 (MQ=255)
tCGACGATCACCACACCGTCGAAGATGCCGGCCTGGGGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTg > 2:3970728/1‑93 (MQ=255)
cgacgaTCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTgg < 2:2529634/93‑1 (MQ=255)
cgacgaTCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTgg < 2:2529633/93‑1 (MQ=255)
acgaTCACCACACCGTCGAAGATGCCGGCCTGAAGCTGGGAGAAGCGCTAAAAATCGCCCTCGGAGACAAACCCCGTATTTGGCGCTTTGGtt > 2:2398489/1‑93 (MQ=255)
cgaTCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGttt < 1:4630284/93‑1 (MQ=255)
cgaTCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGttt > 2:3867362/1‑93 (MQ=255)
cgaTCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGttt < 1:1471909/93‑1 (MQ=255)
gaTCACCACACCGTCGAAGATGCCGGCCTGGGGCTGGGCGAAGCGCTAAAAATCGACCTCGGAGACAAACGCGGTATTTGCCGCTTTGGtttt > 2:2266857/1‑93 (MQ=255)
gaTCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGtttt < 1:1047364/93‑1 (MQ=255)
gaTCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCACCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGtttt > 1:4457751/1‑93 (MQ=255)
aTCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTtg < 1:4558326/93‑1 (MQ=255)
aTCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTtg > 1:191417/1‑93 (MQ=255)
aTCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTtg > 1:4734784/1‑93 (MQ=255)
accacACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGc < 2:4300059/93‑1 (MQ=255)
accacACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGc > 1:990976/1‑93 (MQ=255)
ccacACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCt > 2:1110072/1‑93 (MQ=255)
ccacACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCt > 1:2878323/1‑93 (MQ=255)
acacCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTAc < 1:2654813/93‑1 (MQ=255)
acacCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTAc < 2:2746650/93‑1 (MQ=255)
acCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCg > 2:1392993/1‑93 (MQ=255)
cGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCGAt < 1:1158879/93‑1 (MQ=255)
tCGAAGATACCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCGATgg < 1:4412689/93‑1 (MQ=255)
gAAGATGCCGGCCTGGAGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCGATGGAc > 2:3056321/1‑93 (MQ=255)
aaGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCGATGGACg > 1:3462413/1‑93 (MQ=255)
aGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCGATGGACGa > 2:1291385/1‑93 (MQ=255)
gATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCGATGGACGaa < 2:4180407/93‑1 (MQ=255)
gATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCGATGGACGaa > 1:4434130/1‑93 (MQ=255)
aTACCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCGATGGACGAAt < 2:4130717/93‑1 (MQ=255)
|
CTGGATCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATACCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCGATGGACGAAT > NC_000913/2092102‑2092282
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGCTGGATCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATACCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCGATGGACGAA > NC_000913/2092100‑2092281
|
TGCTGGATCAGATCGCTCCCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGC < SRR4302544.2769673/94‑1 (MQ=60)
GCTGGATCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCC < SRR4302544.312251/94‑1 (MQ=60)
CTGGATCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCG > SRR4302544.2961909/1‑94 (MQ=60)
CTGGATCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCG < SRR4302544.1514400/94‑1 (MQ=60)
TGGATCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGG < SRR4302544.2322536/94‑1 (MQ=60)
GATCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCGAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCC > SRR4302544.4758004/1‑94 (MQ=60)
GATCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCC < SRR4302544.3589830/94‑1 (MQ=60)
ATCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCT < SRR4302544.2501452/94‑1 (MQ=60)
TCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTG < SRR4302544.2110786/94‑1 (MQ=60)
CAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGG > SRR4302544.2514884/1‑94 (MQ=60)
CAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGG < SRR4302544.2121769/94‑1 (MQ=60)
ATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGC > SRR4302544.3069259/1‑94 (MQ=60)
TCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCT < SRR4302544.3929206/94‑1 (MQ=60)
CGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTG > SRR4302544.1130410/1‑94 (MQ=60)
TACCCACGACGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGC < SRR4302544.910255/94‑1 (MQ=60)
CGGCGGGTTCCGCATGGAAATCAACGTCCAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCG < SRR4302544.983866/94‑1 (MQ=60)
GCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCT < SRR4302544.3616493/94‑1 (MQ=60)
GGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAA > SRR4302544.300883/1‑94 (MQ=60)
TTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAA > SRR4302544.4133768/1‑94 (MQ=60)
CATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCC > SRR4302544.2986547/1‑94 (MQ=60)
ATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGACGATGCCGGCCTGGCGCTGGGCGAAGGGCTAAAAATCGCCC > SRR4302544.1218864/1‑94 (MQ=60)
ATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCC < SRR4302544.2852088/94‑1 (MQ=60)
TGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCT < SRR4302544.4788173/94‑1 (MQ=60)
GGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTC < SRR4302544.1293298/94‑1 (MQ=60)
AAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGG < SRR4302544.3890427/94‑1 (MQ=60)
AAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGG > SRR4302544.1541887/1‑94 (MQ=60)
AAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGG > SRR4302544.2652574/1‑94 (MQ=60)
AATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGA > SRR4302544.3647483/1‑94 (MQ=60)
ATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGGGCTCGCCGAAGCGCTAAAAATCGCCCTCGGta > SRR4302544.3718699/1‑92 (MQ=60)
ATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGTG > SRR4302544.3718700/1‑94 (MQ=60)
TCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGA < SRR4302544.3947006/94‑1 (MQ=60)
CAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGCAGATGCCGGCCTGGCGCTGTGCGAAGCGCTAAAAATCGCCCTCGGAGAC > SRR4302544.2759489/1‑94 (MQ=60)
CAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGAC < SRR4302544.1411016/94‑1 (MQ=60)
CGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAA > SRR4302544.1837385/1‑94 (MQ=60)
GTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAGAC > SRR4302544.642270/1‑94 (MQ=60)
TCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACG > SRR4302544.4231260/1‑94 (MQ=60)
AAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCG > SRR4302544.1315771/1‑94 (MQ=60)
AGGCGACCACTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGT < SRR4302544.4007773/94‑1 (MQ=60)
CGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATT < SRR4302544.2863998/94‑1 (MQ=60)
CGACCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGATGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATT > SRR4302544.33535/1‑94 (MQ=60)
GACCTCTATATCGACGATCACCACACCGGCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTG > SRR4302544.1834190/1‑94 (MQ=60)
CCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGC > SRR4302544.4581474/1‑94 (MQ=60)
CCTCTATATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGC < SRR4302544.638379/94‑1 (MQ=60)
ATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTG < SRR4302544.903078/94‑1 (MQ=60)
ATCGACGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTG < SRR4302544.4746938/94‑1 (MQ=60)
CGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTT < SRR4302544.1486485/94‑1 (MQ=60)
CGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTT < SRR4302544.4676183/94‑1 (MQ=60)
CGATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCACCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTT > SRR4302544.4502634/1‑94 (MQ=60)
GATCACCACACCGTCGAAGATGCCNGCCTGNCGCTGNGCGAAGCGCTAAAAATCGCCCTCGGAGCCAANCNGNGTATTTGCCGNTTNGNTNTTN > SRR4302544.4352073/1‑94 (MQ=60)
GATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTG > SRR4302544.4781468/1‑94 (MQ=60)
GATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTG < SRR4302544.1057746/94‑1 (MQ=60)
GATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTG > SRR4302544.193336/1‑94 (MQ=60)
ATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGT < SRR4302544.4603798/94‑1 (MQ=60)
ATCACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGT > SRR4302544.2006930/1‑94 (MQ=60)
CACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGC > SRR4302544.1000740/1‑94 (MQ=60)
ACCACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCT > SRR4302544.2906103/1‑94 (MQ=60)
ACACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACC < SRR4302544.2680273/94‑1 (MQ=60)
CACCGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCG < SRR4302544.2325035/94‑1 (MQ=60)
CGTCGAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCGATG < SRR4302544.1170415/94‑1 (MQ=60)
TCGAAGATACCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCGATGGA < SRR4302544.4457242/94‑1 (MQ=60)
GAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCGATGGACG > SRR4302544.3495451/1‑94 (MQ=60)
GAAGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCGATGGACG > SRR4302544.3096954/1‑94 (MQ=60)
AGATGCCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCGATGGACGAA > SRR4302544.4478862/1‑94 (MQ=60)
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TGCTGGATCAGATCGCTACCCACGGCGGTTTCCGCATGGAAATCAACGTCAAAGGCGACCTCTATATCGACGATCACCACACCGTCGAAGATACCGGCCTGGCGCTGGGCGAAGCGCTAAAAATCGCCCTCGGAGACAAACGCGGTATTTGCCGCTTTGGTTTTGTGCTACCGATGGACGAA > NC_000913/2092100‑2092281
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
