Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
NC_000913 |
2,183,895 |
(G)7→10 |
intergenic (‑79/‑42) |
yohL ← / → yohM |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 2183888 | 14 (0.080) | 75 (0.430)
+GGG |
49/164 |
2.8 |
84.2% |
intergenic (‑72/‑49) |
yohL/yohM |
hypothetical protein/hypothetical protein |
| ? | NC_000913 |
2183889 = |
14 (0.080) | intergenic (‑73/‑48) |
yohL/yohM |
hypothetical protein/hypothetical protein |
TCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2183797‑2183888
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGG > NC_000913/2183889‑2183978
|||
TCACGGATTGTATGAAACAAGGCAACCCCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTTCTGGGGGGTAGTATCAGGTACTG < 1:3861692/93‑1
CACGGATTGTATGAGACATGGCACCACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGG < 2:2589213/93‑1
CACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGG < 2:1647867/93‑1
CACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGG > 2:2264194/1‑93
ACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGG > 2:3489497/1‑93
ACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGG > 2:3302114/1‑93
ACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGG > 1:1615210/1‑93
CGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGG > 1:142314/1‑93
GGATTGTATGAGACATGGCAACGCCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGCAGTATCAGGTACTGGGGG < 2:4115379/93‑1
GGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATCGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGG < 1:3651009/93‑1
GGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGG < 1:4298910/93‑1
GGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGG < 2:2980393/93‑1
GGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGG > 1:1467188/1‑93
GATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGG < 2:4003304/93‑1
ATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGG < 1:3319552/93‑1
TTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGG < 1:423094/93‑1
TGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTATTATCAGGTACTTGGGGGGGG < 2:4572358/93‑1
gATGAGACATGGCAACACGTGTTTAAGAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGGGag < 2:1767840/92‑3
TATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGGGag > 2:4738304/1‑91
TATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGGGag > 1:185382/1‑91
TATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGGGag > 2:493472/1‑91
TATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGGGag > 1:4470084/1‑91
TGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGGGagtg > 2:35541/1‑89
GAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑G > 2:1558832/1‑93
AGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GA > 2:281703/1‑93
GACATGGCAACCCCTGGTTAACAAGAATATGAAAAATCATAGCACTATAAATCTACTGGGGGGTAGTATCCGGTATTGGTGGGGGGG‑GTA‑GAA < 2:2479458/93‑1
ATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCA > 1:3977526/1‑93
TGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAG > 1:3342123/1‑93
GGCAACACCTGGTTAAAAAGAATATGAAAAATCATAGCAGTATTAATGTTCTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGA < 1:3847139/93‑1
GGCAACACCTGGTTAAAAAGAATATGAAAAATCATAGCACTATTAATCTACGGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGA < 2:798075/93‑1
AACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTG > 1:135234/1‑93
AACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTG > 2:4232101/1‑93
ACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGC > 1:2056102/1‑93
CACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCC > 1:1895977/1‑93
CTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGGGGGGGACGCATCAGATTGCCa > 1:2401297/1‑92
CTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAA > 2:3568792/1‑93
GTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTA > 2:2139716/1‑93
TTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAA > 1:939413/1‑93
TAAAAAGAATATGAAAAAGCATAGCAGTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAAT < 2:2703592/93‑1
AACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTGATA > 1:2444852/1‑93
AACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATA > 1:2038348/1‑93
AACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGT‑CATGGGGGGGGGAGTA‑GACTAAGATTGCTGAAACAATA > 1:2444854/1‑93
CAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGGGG‑GTA‑GAATCAGATTGCCGAATTAATACT > 2:4437851/1‑93
CAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACT > 1:3423772/1‑93
CAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACT > 1:3847087/1‑93
AATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGA > 1:3689113/1‑93
TGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTGCT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTA < 2:2545317/93‑1
AAAAGTGATAGCTGTATTAATCTACGGGGGGGTAGTATGAGGTAC‑GGGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATT < 1:4334298/93‑1
AAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGGGG‑GTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTA > 1:4020373/1‑93
AAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTA > 2:3196925/1‑93
AAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTA > 2:1866731/1‑93
atATCATAGCAGTATTAATCTGCTGGGGGGCATTATCAGTTAC‑GGGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTAT < 1:1065011/91‑1
aagCATAGCACTATGAATCTGCTGGGGGGTAGTATCAGGT‑CCGGGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATC < 1:420860/90‑1
GCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCG > 1:4322006/1‑93
CTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAT > 2:2491715/1‑93
CTATTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAT > 2:3973666/1‑93
TATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAT > 1:642266/1‑93
TTAATCTACTGGGGGTTAGTATAAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTA < 2:2522488/93‑1
TTAATCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTA > 2:2334371/1‑93
TCTACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAAC > 1:4326875/1‑93
tgCTGGGGGGTAATATAAGGT‑CGTGGGGGGGGGAGCA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACac < 2:4194903/91‑3
tagTGGGGGGTAGTATCAGGT‑TGGGGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTC < 1:2357121/90‑1
TACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTC > 1:4425768/1‑93
TACTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTC > 2:3110087/1‑93
CTGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTT > 2:4118148/1‑93
TGGGTGCTAGTATCAGTTAC‑GGGGGGGGCGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTC < 1:3130100/93‑1
TGGGGGGTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTC > 1:2134775/1‑93
GGGGGTAGTATCAGGTACTGGGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCT > 2:1899261/1‑93
GGGGTAGTATCAGGTA‑TTGGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTC < 1:103027/93‑1
GGTAGTATAGAGTACT‑GGGGGGGGTAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAG < 2:369070/93‑1
GTAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGC > 1:3956065/1‑93
TAGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCA > 1:3833467/1‑93
AGTATCGGGTGCT‑GGGGGAGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAA < 2:4373899/93‑1
AGTATCAGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAA > 2:1763057/1‑93
TCAGGTACT‑GGGGGGGGGAGTC‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAA > 1:2006424/1‑93
AGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAAC < 2:819517/93‑1
AGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAAC > 2:515806/1‑93
AGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAAC > 2:2072638/1‑93
AGGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAAC > 2:2866042/1‑93
GGTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACG > 1:2153351/1‑93
GTACT‑GGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGC > 1:100580/1‑93
tgctGGGGCGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCC < 2:379222/89‑1
tacGGGGTGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCC < 2:759672/90‑1
tgcGGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCT < 1:4443640/90‑1
CTGGGGGTCGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCT < 2:4348421/93‑1
ctGGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACGCTTCTTCAGCAAGGAAACGCCTG > 2:2608186/3‑93
tGGGGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGG > 1:1360614/2‑93
|||
TCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2183797‑2183888
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGGGGAGTA‑GAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGG > NC_000913/2183889‑2183978
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCC > NC_000913/2183803‑2183988
|
ATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑‑GGGGGG‑‑GG < SRR4302544.3351177/94‑1 (MQ=60)
TTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑‑GGGGGG‑‑GGG < SRR4302544.427407/94‑1 (MQ=60)
GTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑‑GGGGGG‑‑Gggag > SRR4302544.187224/1‑90 (MQ=60)
GTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑‑GGGGGG‑‑Gggag > SRR4302544.4515041/1‑90 (MQ=60)
CATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCA > SRR4302544.4017110/1‑94 (MQ=60)
ATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAG > SRR4302544.3373989/1‑94 (MQ=60)
gtcaacagggttaTAACAAGAATATAAAAAATCATACAACTATTAATCTCCTGGGGGGTAGTATCAGGTACGGG‑‑‑‑GGGGGG‑‑GAGTAGAATCAGAT < SRR4302544.1735991/81‑1 (MQ=53)
GGCAACACCTGGTTAAAAAGAATATGAAAAATCATAGCAGTATTAATGTTCTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGAT < SRR4302544.3885315/94‑1 (MQ=60)
CAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTG > SRR4302544.136507/1‑94 (MQ=60)
AACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGC > SRR4302544.2075886/1‑94 (MQ=60)
AACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TG‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCC > SRR4302544.1446449/1‑94 (MQ=60)
ACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCC > SRR4302544.1914300/1‑94 (MQ=60)
CCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑‑GGGGGG‑‑Gggggggacgcatcagattgcca > SRR4302544.2424081/1‑72 (MQ=60)
GTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAA > SRR4302544.948664/1‑94 (MQ=60)
TAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTGATA > SRR4302544.2468158/1‑94 (MQ=60)
TAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATA > SRR4302544.2058034/1‑94 (MQ=60)
ggataacaagaataagaaaaatgatagctctatgaatcgtctggtggtgaggctcagggccgggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTA < SRR4302544.983011/30‑1 (MQ=60)
ACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACT > SRR4302544.3885262/1‑94 (MQ=60)
ACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACT > SRR4302544.3456503/1‑94 (MQ=60)
ttagcaagaagagggaaaagcaaagcgtgagtgatgtggcggggtgtattatcaggcactggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAAT < SRR4302544.1529053/32‑1 (MQ=60)
AAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TG‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAA > SRR4302544.2945374/1‑94 (MQ=60)
gtcgctaaagaagcgcatataagtcggcgtagtgggggggggtgtggtggccagtactggctgcGG‑‑GAGTAGAATCAGATTGCCGAATTAATAC < SRR4302544.2815693/30‑1 (MQ=60)
GAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGA > SRR4302544.3725881/1‑94 (MQ=60)
aaaaatacaagaaatcgttgcattactccgctgcggggtggacgtcacaagtcgtggggaGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAA < SRR4302544.1789401/34‑1 (MQ=60)
aaaagtgatagctgTATTAATCTACGGGGGGGTAGTATGAGGTACGGG‑‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTA < SRR4302544.4378418/80‑1 (MQ=60)
AAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GGGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTA > SRR4302544.4060389/1‑94 (MQ=60)
cagtgcaagagcgtgctggttggcgtcggcagggtaataccggatcttggaGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTAT < SRR4302544.241122/43‑1 (MQ=60)
ATATCATAGCAGTATTAATCTGCTGGGGGGCATTATCAGTTACGGG‑‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATC < SRR4302544.1075598/94‑1 (MQ=60)
AAGCATAGCACTATGAATCTGCTGGGGGGTAGTATCAGGTCCGGG‑‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCA < SRR4302544.425161/94‑1 (MQ=60)
TAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TG‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCG > SRR4302544.2904829/1‑94 (MQ=60)
gcatggagctattagcttgggggggactagtatgaggtgctggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATG < SRR4302544.2944126/51‑1 (MQ=60)
AGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCG > SRR4302544.4366025/1‑94 (MQ=60)
atgagacagtcatgtgatggggggtagtaatacggactggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACC < SRR4302544.2702064/54‑1 (MQ=60)
AATATTAATGTACTGGGGGGTAGTATCAGGTAC‑‑TG‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATT < SRR4302544.2395996/94‑1 (MQ=60)
CTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGGG‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAT > SRR4302544.648613/1‑94 (MQ=60)
aatcagtggggcGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAA < SRR4302544.4367614/82‑1 (MQ=60)
ATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAAC > SRR4302544.4370937/1‑94 (MQ=60)
gctggtcgggggtgggctggagtagtgT‑‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACT < SRR4302544.3063833/67‑1 (MQ=60)
CTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTC > SRR4302544.4470420/1‑94 (MQ=60)
aggctacgtgggggtagtagcaggtcatggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAA < SRR4302544.3492464/64‑1 (MQ=60)
TAGTGGGGGGTAGTATCAGGT‑‑‑‑TGGGGGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCT < SRR4302544.2379445/94‑1 (MQ=60)
ctggggcggcgcATCAGGTAC‑‑TG‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCT < SRR4302544.2445916/82‑1 (MQ=60)
CTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTC > SRR4302544.2155192/1‑94 (MQ=60)
TGGGTGCTAGTATCAGTTAC‑‑G‑‑‑‑GGGGGGGCGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCT < SRR4302544.3159839/94‑1 (MQ=60)
tcccggcgggcaccgccgcgtaatcgagcGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTT < SRR4302544.2731013/65‑1 (MQ=60)
GGGGTAGTATCAGGTAT‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCA < SRR4302544.103971/94‑1 (MQ=60)
GGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGC > SRR4302544.3995398/1‑94 (MQ=60)
GTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCA > SRR4302544.3871471/1‑94 (MQ=60)
tggtagaagctagtgT‑‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAA < SRR4302544.2494812/79‑1 (MQ=60)
gcagagtaacagccgctggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAG < SRR4302544.2803238/75‑1 (MQ=60)
gcggaaaattgacgggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAA < SRR4302544.3787592/78‑1 (MQ=60)
ATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTCGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAA > SRR4302544.2025920/1‑94 (MQ=60)
cggcactgT‑‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACG < SRR4302544.3432230/86‑1 (MQ=60)
AGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACG > SRR4302544.2173834/1‑94 (MQ=60)
agcagatcaggagaGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAA < SRR4302544.4497332/80‑1 (MQ=60)
GGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGC > SRR4302544.101502/1‑94 (MQ=60)
gagctaggggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAAC < SRR4302544.2147795/84‑1 (MQ=60)
tgcggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTG < SRR4302544.4488431/89‑1 (MQ=60)
ctggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGG > SRR4302544.1374124/5‑94 (MQ=60)
GGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTT < SRR4302544.2512216/94‑1 (MQ=60)
GAGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTT < SRR4302544.4317524/94‑1 (MQ=60)
GGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCTTGGTTCTTC > SRR4302544.2258986/1‑94 (MQ=60)
GG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCAT > SRR4302544.157045/1‑94 (MQ=60)
GG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCAT < SRR4302544.274311/94‑1 (MQ=60)
GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCC < SRR4302544.40403/94‑1 (MQ=60)
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ATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCC > NC_000913/2183803‑2183988
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
