Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCC > NC_000913/2183803‑2183988
|
ATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑‑GGGGGG‑‑GG < SRR4302544.3351177/94‑1 (MQ=60)
TTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑‑GGGGGG‑‑GGG < SRR4302544.427407/94‑1 (MQ=60)
GTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑‑GGGGGG‑‑Gggag > SRR4302544.187224/1‑90 (MQ=60)
GTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑‑GGGGGG‑‑Gggag > SRR4302544.4515041/1‑90 (MQ=60)
CATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCA > SRR4302544.4017110/1‑94 (MQ=60)
ATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAG > SRR4302544.3373989/1‑94 (MQ=60)
gtcaacagggttaTAACAAGAATATAAAAAATCATACAACTATTAATCTCCTGGGGGGTAGTATCAGGTACGGG‑‑‑‑GGGGGG‑‑GAGTAGAATCAGAT < SRR4302544.1735991/81‑1 (MQ=53)
GGCAACACCTGGTTAAAAAGAATATGAAAAATCATAGCAGTATTAATGTTCTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGAT < SRR4302544.3885315/94‑1 (MQ=60)
CAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTG > SRR4302544.136507/1‑94 (MQ=60)
AACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGC > SRR4302544.2075886/1‑94 (MQ=60)
AACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TG‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCC > SRR4302544.1446449/1‑94 (MQ=60)
ACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCC > SRR4302544.1914300/1‑94 (MQ=60)
CCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑‑GGGGGG‑‑Gggggggacgcatcagattgcca > SRR4302544.2424081/1‑72 (MQ=60)
GTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAA > SRR4302544.948664/1‑94 (MQ=60)
TAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTGATA > SRR4302544.2468158/1‑94 (MQ=60)
TAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATA > SRR4302544.2058034/1‑94 (MQ=60)
ggataacaagaataagaaaaatgatagctctatgaatcgtctggtggtgaggctcagggccgggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTA < SRR4302544.983011/30‑1 (MQ=60)
ACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACT > SRR4302544.3885262/1‑94 (MQ=60)
ACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACT > SRR4302544.3456503/1‑94 (MQ=60)
ttagcaagaagagggaaaagcaaagcgtgagtgatgtggcggggtgtattatcaggcactggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAAT < SRR4302544.1529053/32‑1 (MQ=60)
AAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TG‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAA > SRR4302544.2945374/1‑94 (MQ=60)
gtcgctaaagaagcgcatataagtcggcgtagtgggggggggtgtggtggccagtactggctgcGG‑‑GAGTAGAATCAGATTGCCGAATTAATAC < SRR4302544.2815693/30‑1 (MQ=60)
GAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGA > SRR4302544.3725881/1‑94 (MQ=60)
aaaaatacaagaaatcgttgcattactccgctgcggggtggacgtcacaagtcgtggggaGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAA < SRR4302544.1789401/34‑1 (MQ=60)
aaaagtgatagctgTATTAATCTACGGGGGGGTAGTATGAGGTACGGG‑‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTA < SRR4302544.4378418/80‑1 (MQ=60)
AAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GGGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTA > SRR4302544.4060389/1‑94 (MQ=60)
cagtgcaagagcgtgctggttggcgtcggcagggtaataccggatcttggaGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTAT < SRR4302544.241122/43‑1 (MQ=60)
ATATCATAGCAGTATTAATCTGCTGGGGGGCATTATCAGTTACGGG‑‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATC < SRR4302544.1075598/94‑1 (MQ=60)
AAGCATAGCACTATGAATCTGCTGGGGGGTAGTATCAGGTCCGGG‑‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCA < SRR4302544.425161/94‑1 (MQ=60)
TAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TG‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCG > SRR4302544.2904829/1‑94 (MQ=60)
gcatggagctattagcttgggggggactagtatgaggtgctggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATG < SRR4302544.2944126/51‑1 (MQ=60)
AGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCG > SRR4302544.4366025/1‑94 (MQ=60)
atgagacagtcatgtgatggggggtagtaatacggactggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACC < SRR4302544.2702064/54‑1 (MQ=60)
AATATTAATGTACTGGGGGGTAGTATCAGGTAC‑‑TG‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATT < SRR4302544.2395996/94‑1 (MQ=60)
CTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGGG‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAT > SRR4302544.648613/1‑94 (MQ=60)
aatcagtggggcGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAA < SRR4302544.4367614/82‑1 (MQ=60)
ATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAAC > SRR4302544.4370937/1‑94 (MQ=60)
gctggtcgggggtgggctggagtagtgT‑‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACT < SRR4302544.3063833/67‑1 (MQ=60)
CTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTC > SRR4302544.4470420/1‑94 (MQ=60)
aggctacgtgggggtagtagcaggtcatggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAA < SRR4302544.3492464/64‑1 (MQ=60)
TAGTGGGGGGTAGTATCAGGT‑‑‑‑TGGGGGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCT < SRR4302544.2379445/94‑1 (MQ=60)
ctggggcggcgcATCAGGTAC‑‑TG‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCT < SRR4302544.2445916/82‑1 (MQ=60)
CTGGGGGGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTC > SRR4302544.2155192/1‑94 (MQ=60)
TGGGTGCTAGTATCAGTTAC‑‑G‑‑‑‑GGGGGGGCGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCT < SRR4302544.3159839/94‑1 (MQ=60)
tcccggcgggcaccgccgcgtaatcgagcGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTT < SRR4302544.2731013/65‑1 (MQ=60)
GGGGTAGTATCAGGTAT‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCA < SRR4302544.103971/94‑1 (MQ=60)
GGTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGC > SRR4302544.3995398/1‑94 (MQ=60)
GTAGTATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCA > SRR4302544.3871471/1‑94 (MQ=60)
tggtagaagctagtgT‑‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAA < SRR4302544.2494812/79‑1 (MQ=60)
gcagagtaacagccgctggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAG < SRR4302544.2803238/75‑1 (MQ=60)
gcggaaaattgacgggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAA < SRR4302544.3787592/78‑1 (MQ=60)
ATCAGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTCGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAA > SRR4302544.2025920/1‑94 (MQ=60)
cggcactgT‑‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACG < SRR4302544.3432230/86‑1 (MQ=60)
AGGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACG > SRR4302544.2173834/1‑94 (MQ=60)
agcagatcaggagaGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAA < SRR4302544.4497332/80‑1 (MQ=60)
GGTAC‑‑TGG‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGC > SRR4302544.101502/1‑94 (MQ=60)
gagctaggggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAAC < SRR4302544.2147795/84‑1 (MQ=60)
tgcggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTG < SRR4302544.4488431/89‑1 (MQ=60)
ctggGGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGG > SRR4302544.1374124/5‑94 (MQ=60)
GGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTT < SRR4302544.2512216/94‑1 (MQ=60)
GAGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTT < SRR4302544.4317524/94‑1 (MQ=60)
GGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCTTGGTTCTTC > SRR4302544.2258986/1‑94 (MQ=60)
GG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCAT > SRR4302544.157045/1‑94 (MQ=60)
GG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCAT < SRR4302544.274311/94‑1 (MQ=60)
GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCC < SRR4302544.40403/94‑1 (MQ=60)
|
ATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑‑GGGGGG‑‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCC > NC_000913/2183803‑2183988
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
