Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1475 |
266.7 |
13469680 |
98.2% |
13227225 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,183,895 |
(G)7→9 |
intergenic (‑79/‑42) |
yohL ← / → yohM |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,183,888 | 1 | . | G | 96.6%
| 373.3
/ 4.9
| 117 | intergenic (‑72/‑49) | yohL/yohM | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/4); new base G (99/14); total (99/18) |
| Fisher's exact test for biased strand distribution p-value = 4.13e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.99e-01 |
| * | NC_000913 | 2,183,888 | 2 | . | G | 91.4%
| 340.1
/ 25.9
| 116 | intergenic (‑72/‑49) | yohL/yohM | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (4/6); new base G (94/12); total (98/18) |
| Fisher's exact test for biased strand distribution p-value = 8.84e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
Only 100 of 158 total aligned reads displayed.
ATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑T‑‑‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCT > NC_000913/2183796‑2183976
||
aTCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑t > 1:1942034/1‑93 (MQ=255)
tCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑T‑‑‑g < 1:834178/93‑1 (MQ=255)
cACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑T‑‑‑g‑‑g < 1:5292075/93‑1 (MQ=255)
cACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑T‑‑‑g‑‑g < 1:2058395/93‑1 (MQ=255)
aCGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑T‑‑‑g‑‑g‑‑g < 2:4288890/93‑1 (MQ=255)
ggATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑T‑‑‑g‑‑g‑‑g‑‑g‑‑g > 2:3124277/1‑93 (MQ=255)
aTTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑T‑‑‑g‑‑g‑‑g‑‑g‑‑gg‑g > 2:3437100/1‑93 (MQ=255)
ttGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑T‑‑‑g‑‑g‑‑g‑‑g‑‑gg‑gg > 2:2266121/1‑92 (MQ=255)
gTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑T‑‑‑g‑‑g‑‑g‑‑g‑‑gg‑ggga < 2:2165985/93‑4 (MQ=255)
tATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑T‑‑‑g‑‑g‑‑g‑‑g‑‑gg‑ggagt > 1:507733/1‑89 (MQ=255)
aTGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCa > 1:4594084/1‑93 (MQ=255)
gCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TG‑‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGAtt > 2:6386185/1‑93 (MQ=255)
aaCACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTg > 2:3050620/1‑93 (MQ=255)
acacCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGc > 2:5298773/1‑93 (MQ=255)
acacCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGc > 1:3963451/1‑93 (MQ=255)
cacCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGcc > 1:2466791/1‑93 (MQ=255)
acCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCg > 2:2714797/1‑93 (MQ=255)
acCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TG‑‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGa > 1:4872201/1‑93 (MQ=255)
cTGTTTAAAAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATAGGGCAC‑‑T‑‑‑G‑‑G‑‑GGTG‑‑GG‑GAGTAGAATCAGATTGCCGaa < 2:2150306/93‑1 (MQ=255)
cTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGaa > 1:2403021/1‑93 (MQ=255)
aaCAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGTTGAATTAAtt > 1:2567961/1‑92 (MQ=255)
aaCAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATa > 2:3920252/1‑93 (MQ=255)
aCAAGATTATAAAAAATCTGAGAGCTATTGGGCTAGG‑GGGGGGTAGTATCAGGTACGGG‑‑‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATAc < 2:3407381/93‑1 (MQ=255)
aCAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATaa > 1:2196642/1‑92 (MQ=255)
aCAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATAc > 1:1759316/1‑93 (MQ=255)
cAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGTGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACt < 1:1048982/93‑1 (MQ=255)
aaGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGGGG‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACt > 2:5142636/1‑93 (MQ=255)
aaGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTa > 1:5882606/1‑93 (MQ=255)
aggatatGAAAAATCATCGCACGATTTAGCTCGC‑GGGGAGCAGTATCAGGTTC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTaa < 2:2964352/90‑1 (MQ=255)
aGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTaa > 2:4740363/1‑93 (MQ=255)
aGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTaa > 1:223964/1‑93 (MQ=255)
aGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTaa > 2:5180056/1‑93 (MQ=255)
gAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGGCGAATTAATAATAAg > 1:597086/1‑93 (MQ=255)
gAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAg > 1:4157754/1‑93 (MQ=255)
gAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAg > 2:100670/1‑93 (MQ=255)
atatGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GGGAAGAATCAGATTGCCGCATTAATACTAAgca > 1:5165531/1‑91 (MQ=255)
atatGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGaa > 1:4953946/1‑93 (MQ=255)
atatGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGaa > 1:1256595/1‑93 (MQ=255)
tatGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAat > 1:6267719/1‑93 (MQ=255)
aatGAAACATCATCGCACTCTTAATCGGCT‑GGGGGGTAGTATCACGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAat < 2:5121930/92‑1 (MQ=255)
tGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAatta > 2:3228682/1‑93 (MQ=255)
tGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAatta > 1:6693804/1‑93 (MQ=255)
tGAAAAATAATAGTGCTATTAATCTTGT‑GGGGGGGAGTATCATGTAG‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAatta < 2:3751198/93‑1 (MQ=255)
tGAAAAACCATAGCACTATTAAGCTGCG‑GTGGGGTAGTATAAGGTGCGGG‑‑‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAatta < 2:6641208/93‑1 (MQ=255)
taaaacTCGTAGCAGTAGTGATCCCCT‑GGGGTGTAGTATCAGGTCC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAattat < 1:5224042/92‑1 (MQ=255)
aaaaaaTAATAGCAGTATTAGTCGCGG‑GGGGGAGAGGATCAGGTAG‑‑TG‑‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAattatt < 1:4791576/92‑1 (MQ=255)
aaaaaTCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAattatt > 1:4517499/1‑93 (MQ=255)
aaaaTCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAAttatta > 1:3887384/1‑93 (MQ=255)
aaaaTCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAAttatta > 2:1609689/1‑93 (MQ=255)
aTCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCa > 1:3022836/1‑93 (MQ=255)
aTCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGCAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCa > 1:4735065/1‑93 (MQ=255)
tCATAGCACTATTAATCTACT‑GGGGGTTAGTATCAGGTACGGG‑‑‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCAt < 2:372530/93‑1 (MQ=255)
tCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCAt > 2:3080902/1‑93 (MQ=255)
tCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCAt > 1:2049546/1‑93 (MQ=255)
cATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATg > 2:6566401/1‑93 (MQ=255)
aTAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGa > 1:4677101/1‑93 (MQ=255)
aTAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGa > 1:3405690/1‑93 (MQ=255)
tAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGAc > 1:514045/1‑93 (MQ=255)
gCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCg > 1:5794118/1‑93 (MQ=255)
gCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCg > 2:3920023/1‑93 (MQ=255)
gCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGGAGAATCAGCTTGCCGAATTAATACTAAGAATTATTATCATGAcgg > 2:817276/1‑91 (MQ=255)
aCTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGGAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGaa > 1:3562425/1‑93 (MQ=255)
aCTATTAATCTACT‑GGGGGGGAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATGATGACCGat > 1:4269512/1‑92 (MQ=255)
cTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAt > 1:694103/1‑93 (MQ=255)
cTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAt > 2:6296766/1‑93 (MQ=255)
tATTAATCTACTGGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GGGTAGAATCAGATTGCGGAATTAATACTAAGAATTATTATAATGACCGAAt > 2:2386565/1‑93 (MQ=255)
tATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAtt > 2:2124002/1‑93 (MQ=255)
tATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAtt > 1:6543517/1‑93 (MQ=255)
tATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAtt > 1:6138220/1‑93 (MQ=255)
aTTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAttt > 1:6310149/1‑93 (MQ=255)
ttAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTa > 1:2977813/1‑93 (MQ=255)
tAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTAc > 2:2085469/1‑93 (MQ=255)
aaTCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACa > 2:5393239/1‑93 (MQ=255)
aTCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACaa > 1:6396778/1‑93 (MQ=255)
tCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GGGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAAc > 2:5763677/1‑93 (MQ=255)
tCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GGGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTAAAAc > 1:1573080/1‑93 (MQ=255)
tCTACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGGAGAATCAGATTGCCGGATTAATACCAAAGATTATTATGATGAACGAATTTACaaa > 2:3119210/1‑92 (MQ=255)
gtgcT‑GGGGGCTAGTATCAGGTGG‑‑G‑‑‑G‑‑G‑‑G‑‑GGTGG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAAct < 2:2445091/90‑1 (MQ=255)
tgcT‑GGCGGGGAGTATCAGGTGC‑‑G‑‑‑G‑‑GT‑G‑‑G‑‑GGTGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAActc < 2:3251456/91‑1 (MQ=255)
tACT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAActc > 1:1875623/1‑93 (MQ=255)
aCT‑AGGGAGTAGTACGAGGTAC‑‑T‑‑‑GGCG‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAActct < 1:5055800/93‑1 (MQ=255)
tcgggggggTGGTATCAGGTAG‑‑T‑‑‑G‑‑G‑‑GGTG‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAActct < 2:1607755/90‑1 (MQ=255)
tcaggggggGAGTATCAGGAAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAActct < 1:1008938/90‑1 (MQ=255)
cT‑GGGGGTTAGTAGAAGGTAT‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACtctt < 2:4882266/93‑1 (MQ=255)
cT‑GGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GGGTAGAATAAGATTCCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACtctt > 1:752483/1‑93 (MQ=255)
cT‑GGGGGGTAGTATCAGGTAC‑‑TG‑‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACtcttc > 1:4124800/1‑93 (MQ=255)
t‑GGGGGGCAGTATCAGGCAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGCATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACccttc > 1:1349353/1‑93 (MQ=255)
gtggggtTGGTATAAGGTAC‑‑T‑‑‑G‑‑GGTG‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACtcttc < 1:536008/91‑1 (MQ=255)
ggggggTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACtcttct > 2:433275/1‑93 (MQ=255)
ggggggTAGTATCAGGTAC‑‑TG‑‑G‑‑G‑‑G‑‑G‑‑GG‑GTGTAGAATCAAATTGCCGAATTTATACTAAGAATTATTATCATGACCGAAATTAAAACTcttctt > 2:4066216/1‑93 (MQ=255)
ggggTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCttcttc > 1:3126170/1‑93 (MQ=255)
ggggTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCttcttc > 2:1005918/1‑93 (MQ=255)
ggTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCCAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAg > 2:3558906/1‑93 (MQ=255)
gtagtaTCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGc > 1:5755516/1‑93 (MQ=255)
tagtaTCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCa > 2:1217567/1‑93 (MQ=255)
agtaTCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCaa > 1:2001987/1‑93 (MQ=255)
gtaTCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTTTTCTTCAGCAAg > 2:2713713/1‑93 (MQ=255)
gtaTCAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAg > 2:5462790/1‑93 (MQ=255)
cAGGTAC‑‑TGG‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGaaa > 2:4900136/1‑93 (MQ=255)
aatgt‑‑‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCt < 1:62311/89‑1 (MQ=255)
||
ATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACT‑GGGGGGTAGTATCAGGTAC‑‑T‑‑‑G‑‑G‑‑G‑‑G‑‑GG‑GAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCT > NC_000913/2183796‑2183976
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCAT > NC_000913/2183802‑2183986
|
GATTGTATCAGACATTGCTACCCATGGTCAACAAGAATATGAAAAGTTATAGCACTATCAATCTACTGGGGGTTAGTATCAGGTAC‑‑T‑‑‑G‑‑G‑‑GGGGG < SRR4302536.56875/94‑1 (MQ=44)
AGTGTATGACACATGGCAACACCTGATTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑G‑‑G‑‑GGGGGG < SRR4302536.505799/94‑1 (MQ=60)
GTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TG‑‑G‑‑G‑‑GGGGGAGT > SRR4302536.520762/1‑94 (MQ=60)
GTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑G‑‑G‑‑GGGGGggag > SRR4302536.6837619/1‑90 (MQ=60)
aagaagacgTGGCAACACCTGATTAATAAGAATATGAAAAATAAGAGCACTATTAATGTACTGGGGGGTAGTATCAGGTAC‑‑G‑‑‑G‑‑G‑‑GGGGGggagt < SRR4302536.6443798/85‑6 (MQ=60)
TATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑G‑‑G‑‑GGGGGggagt > SRR4302536.6250806/1‑89 (MQ=60)
ATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTA > SRR4302536.274495/1‑94 (MQ=60)
AGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAA > SRR4302536.2977376/1‑94 (MQ=60)
AGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑G‑‑G‑‑GGGGGggggtagaa > SRR4302536.5790799/1‑85 (MQ=60)
CATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCA > SRR4302536.4732000/1‑94 (MQ=60)
CATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGCGTAGTATCAGGTAC‑‑T‑‑‑G‑‑G‑‑GGGGGggtgaagaatcg > SRR4302536.6874651/1‑82 (MQ=60)
ATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAG > SRR4302536.960614/1‑94 (MQ=60)
GCAACACCTGGTTAACAAGAATATAAAAAATCATAGCACTATTAAGCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATT < SRR4302536.3428204/94‑1 (MQ=60)
GCAACACCTGCATAACAAGAATATGAAAAATCATAGCACTATTAATATACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATT < SRR4302536.1628680/94‑1 (MQ=60)
CAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTG > SRR4302536.6493273/1‑94 (MQ=60)
CAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGAAC‑‑T‑‑‑G‑‑G‑‑GGGGGggtatagaataagaatg > SRR4302536.1677419/1‑77 (MQ=60)
AACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGC > SRR4302536.1225070/1‑94 (MQ=60)
AACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGC > SRR4302536.4081114/1‑94 (MQ=60)
ACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCC > SRR4302536.2541273/1‑94 (MQ=60)
CACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TG‑‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGA > SRR4302536.5018783/1‑94 (MQ=60)
ATCTGGTTAAAAAAAATATAAAAACTCATAGCATTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGA < SRR4302536.5048397/94‑1 (MQ=60)
CCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAA > SRR4302536.2475736/1‑94 (MQ=60)
TGTTTAAGAAGAATAAGAAAAATCATAGCATTATTAATCTACTGGGGGGTAGTTTCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATT < SRR4302536.4613995/94‑1 (MQ=60)
GTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑G‑‑G‑‑GGGGGgaggacaatcagattggcaaaattat > SRR4302536.3984248/1‑68 (MQ=60)
TAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGTTGAATTAATT > SRR4302536.2645203/1‑94 (MQ=60)
AACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATAC > SRR4302536.1812027/1‑94 (MQ=60)
AACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATAA > SRR4302536.2262950/1‑94 (MQ=60)
AACAAGAATAGGAAAAATCATCGCACTATGAAGCTACTGGGGGGTAGTATGAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATAC < SRR4302536.2066522/94‑1 (MQ=60)
tcaacaagaaaatgaaaaatcataccattcttagcgtgttggggggtagtatcgttttctggG‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAAT < SRR4302536.314628/32‑1 (MQ=60)
ACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACT > SRR4302536.4904206/1‑94 (MQ=60)
cagaAATATGAAAAATCATATCAGTATTAACCTTCTGGGGGGTAGTATCATGTGC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTA < SRR4302536.22258/90‑1 (MQ=57)
CAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGTGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTA < SRR4302536.1080251/94‑1 (MQ=60)
CAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTA > SRR4302536.6057835/1‑94 (MQ=60)
CAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTA > SRR4302536.4736203/1‑94 (MQ=60)
AAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAA > SRR4302536.229913/1‑94 (MQ=60)
actataatatccaaaatcatagcactattattcgcccgggcggtagtatctgctacggcG‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACT < SRR4302536.2188003/35‑1 (MQ=60)
AGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGGCGAATTAATAATAAG > SRR4302536.613811/1‑94 (MQ=60)
AGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAG > SRR4302536.4281175/1‑94 (MQ=60)
AATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGGGAAGAATCAGATTGCCGCATTAATACTAAGCA > SRR4302536.5319652/1‑94 (MQ=60)
AATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAA > SRR4302536.5102786/1‑94 (MQ=60)
AATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAA > SRR4302536.1294297/1‑94 (MQ=60)
gaaaaaaaaagcatcggactatttactaaaggcggaGTAGTATTAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAAT < SRR4302536.770907/58‑1 (MQ=60)
agaaaatgcaaattgatcgctatatgacgccacggtggtgtagtaccgggtcgtggG‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAG < SRR4302536.4077044/38‑1 (MQ=60)
ATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAAT > SRR4302536.1551627/1‑94 (MQ=60)
ATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAAT > SRR4302536.6454448/1‑94 (MQ=60)
tatgaaatatacgatcactggaaatgttcgtggggttggtggcggtcccgaT‑‑‑G‑‑G‑‑GGGAGAGTAGAATCAGATTGCCGAATTAATACTAAGAATT < SRR4302536.1195939/43‑1 (MQ=60)
gcaatgcctatgtagttagccccagtacgctacggggaggtactgcagcgtgttcctG‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAG < SRR4302536.485406/37‑1 (MQ=60)
atcaaaactcacagcactatgaagcttgTGGGGGGTAGTGTCAGGTCC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTA < SRR4302536.6006867/66‑1 (MQ=60)
ATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTA > SRR4302536.6353964/1‑94 (MQ=60)
ATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTA > SRR4302536.1933877/1‑94 (MQ=60)
ATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTA > SRR4302536.6892600/1‑94 (MQ=60)
taaaactcgtagcagtagtgatcccCTGGGGTGTAGTATCAGGTCC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATT < SRR4302536.5379704/69‑1 (MQ=60)
GAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATT > SRR4302536.4652993/1‑94 (MQ=60)
AAAAAATCATAGCACTATTAATCTACGGGGGGGTAGTATCAGGTA‑‑‑TGGGG‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATT < SRR4302536.416688/94‑1 (MQ=60)
AAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTA > SRR4302536.4002988/1‑94 (MQ=60)
ttaaatagaatcgctctcttaatctaatgggggtcagtaccagctagtggG‑‑G‑‑GGGTGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTAT < SRR4302536.5695519/44‑1 (MQ=60)
AAAATCATAGCACTATCAATCGACTGGGGGTTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATCAT < SRR4302536.4327273/94‑1 (MQ=60)
gaagtagaaaaccactcttaacctgctggggagtgttatccggtacgggG‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATT < SRR4302536.5927125/45‑1 (MQ=60)
AAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATA > SRR4302536.302623/1‑94 (MQ=60)
aaaaataatgacaacattaatgatcccgtggtaaggataagggaaaggG‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTA < SRR4302536.792090/46‑1 (MQ=60)
aaaaaataatagcagtattagtcgcgggggggagaggatcaggtagtgG‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTA < SRR4302536.4935817/46‑1 (MQ=60)
AATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCA > SRR4302536.3111649/1‑94 (MQ=60)
AATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGCAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCA > SRR4302536.4877563/1‑94 (MQ=60)
ATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCAT > SRR4302536.4585546/1‑94 (MQ=60)
ATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCAT > SRR4302536.2111261/1‑94 (MQ=60)
agtgcgatcactgttaatgtactgggggggagtgtcagttgctggG‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCA < SRR4302536.230266/49‑1 (MQ=60)
CATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGA > SRR4302536.3506986/1‑94 (MQ=60)
CATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGA > SRR4302536.4817758/1‑94 (MQ=60)
atcatgtcactttgaccgtactgggggttaggaacggggggtggG‑‑G‑‑GGGGAAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCAT < SRR4302536.2363260/50‑1 (MQ=60)
ATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGAC > SRR4302536.527233/1‑94 (MQ=60)
aaaagtctatgacttgtcatctattggtgagcagtattagggacggggtGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTAT < SRR4302536.4514239/45‑1 (MQ=60)
AGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCG > SRR4302536.5966610/1‑94 (MQ=60)
CACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGGAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAA > SRR4302536.3668943/1‑94 (MQ=60)
CACTATTAATCTACTGGGGGGGAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATGATGACCGAT > SRR4302536.4396775/1‑94 (MQ=60)
ACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAAT > SRR4302536.714382/1‑94 (MQ=60)
CTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATT > SRR4302536.2541181/1‑94 (MQ=60)
CTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATT > SRR4302536.6321147/1‑94 (MQ=60)
CTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATT > SRR4302536.6738383/1‑94 (MQ=60)
TATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTT > SRR4302536.6498122/1‑94 (MQ=60)
ATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTA > SRR4302536.3065467/1‑94 (MQ=60)
TAATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACA < SRR4302536.3124411/94‑1 (MQ=60)
atgaatcaacaggggggtagtcgccgctacgagG‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTA < SRR4302536.526928/61‑1 (MQ=60)
agtcgacgtGGGGGTAGTATCAGATACGGG‑‑‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAA < SRR4302536.5569572/85‑1 (MQ=60)
AATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAA > SRR4302536.6587668/1‑94 (MQ=60)
ATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGGGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTAAAAC > SRR4302536.1619199/1‑94 (MQ=60)
ATCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAAC > SRR4302536.749714/1‑94 (MQ=60)
ATCGACTGGGGTGTAGTATCCGTTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAAC < SRR4302536.1926019/94‑1 (MQ=60)
TCTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACT > SRR4302536.5115289/1‑94 (MQ=60)
CTACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTC > SRR4302536.1932074/1‑94 (MQ=60)
TACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCT > SRR4302536.6590812/1‑94 (MQ=60)
tgttgggggggggatgtagcgagagtggG‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACT < SRR4302536.5876847/66‑1 (MQ=60)
tgtggagggtgatagtgtggcgtcggcgG‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACT < SRR4302536.5354284/66‑1 (MQ=60)
tcaGGGGGGGAGTATCAGGAAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTT < SRR4302536.1038691/91‑1 (MQ=60)
gatgtggggtgagagggtctgggaatagG‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACT < SRR4302536.2172774/66‑1 (MQ=60)
ACTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGGGTAGAATAAGATTCCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTT > SRR4302536.774570/1‑94 (MQ=60)
ACTGGGGGGTAGTATCAGGTAC‑‑TG‑‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTC > SRR4302536.4247087/1‑94 (MQ=60)
ACTAGGGAGTAGTACGAGGTAC‑‑T‑‑‑GGCG‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTT < SRR4302536.5207251/94‑1 (MQ=60)
CTGGGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTC > SRR4302536.6263914/1‑94 (MQ=60)
CTGGGGGGCAGTATCAGGCAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGCATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACCCTTC > SRR4302536.1389600/1‑94 (MQ=60)
gtggggttggtataAGGTAC‑‑T‑‑‑G‑‑GGTGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCT < SRR4302536.549698/80‑1 (MQ=60)
atccgcggggcgcggcgctcaggcggtgggcGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAAC < SRR4302536.3892950/63‑1 (MQ=60)
ctggcgggtgggagcggggtgtggG‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTC < SRR4302536.241447/70‑1 (MQ=60)
aagctggaagcgctgtgccggaaagtggcgatGGGAGTAGAAGCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACT < SRR4302536.5102574/62‑1 (MQ=60)
GGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGGGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTC > SRR4302536.5363172/1‑94 (MQ=60)
GGGGGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTC > SRR4302536.3217531/1‑94 (MQ=60)
gggtatagattgggaggcggcG‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTC < SRR4302536.4613002/73‑1 (MQ=60)
GGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGC > SRR4302536.5241515/1‑94 (MQ=60)
GGTAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGC > SRR4302536.5926725/1‑94 (MQ=60)
ggcggggggcggacaggttgatggggtGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTC < SRR4302536.4826089/67‑1 (MQ=60)
TAGTATCAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAA > SRR4302536.2062236/1‑94 (MQ=60)
AGTATCAGGTAC‑‑TG‑‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAGTTTACAACTCTGCTTCAGCAAGG > SRR4302536.2312945/1‑94 (MQ=60)
CAGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAAC > SRR4302536.2310123/1‑94 (MQ=60)
ttgtttcaggcgaagtcgttGGGAGTATAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAA < SRR4302536.4291274/74‑1 (MQ=60)
agcagtttctggG‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAA < SRR4302536.6912301/82‑1 (MQ=60)
aagcatacatagctgggagggcGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAA < SRR4302536.5771451/72‑1 (MQ=60)
AGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACG > SRR4302536.5241409/1‑94 (MQ=60)
AGGTAC‑‑TGG‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACG > SRR4302536.2907092/1‑94 (MQ=60)
cagttactggG‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCATGGAAAC < SRR4302536.3036557/84‑1 (MQ=60)
GTAC‑‑TGG‑G‑‑G‑‑GGGGGCGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATTACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCC > SRR4302536.1657014/1‑94 (MQ=60)
GTAC‑‑TG‑‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCT > SRR4302536.3017584/1‑94 (MQ=60)
aatgT‑‑‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTG < SRR4302536.64019/90‑1 (MQ=60)
ctggG‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGG < SRR4302536.4658974/90‑1 (MQ=60)
ttttggcggagcGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCT < SRR4302536.4120835/82‑1 (MQ=60)
gacgggggggaGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCT < SRR4302536.254603/83‑1 (MQ=60)
ctggcG‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGG < SRR4302536.2207875/89‑1 (MQ=60)
G‑‑G‑‑TGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCT < SRR4302536.6201040/94‑1 (MQ=60)
G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTAGAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTT < SRR4302536.4311501/94‑1 (MQ=60)
gtgtGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTC < SRR4302536.6653384/90‑1 (MQ=60)
GGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCAT < SRR4302536.124334/94‑1 (MQ=60)
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GATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTAC‑‑T‑‑‑G‑‑G‑‑GGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCAT > NC_000913/2183802‑2183986
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
