Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,208,197 |
A→C |
T360P (ACC→CCC) |
b2122 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,208,197 | 0 | A | C | 97.5%
| 389.9
/ ‑1.8
| 123 | T360P (ACC→CCC) | b2122 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (2/1); new base C (67/52); total (70/53) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 |
Only 100 of 138 total aligned reads displayed.
GGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCT > NC_000913/2208107‑2208285
|
ggAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATCTTGAGCATTATGGTTTACGCATCTGGTTTccc > 2:2997777/1‑93 (MQ=255)
ggAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTccc > 1:2182259/1‑93 (MQ=255)
ggAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGGTTccc > 2:3284110/1‑93 (MQ=255)
ggAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGCTTACGCATCTGGTTTAcc > 2:3284106/1‑93 (MQ=255)
agaAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGa > 2:1975685/1‑93 (MQ=255)
gaAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGAt < 2:1232153/93‑1 (MQ=255)
gaAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGAt < 2:1650973/93‑1 (MQ=255)
aGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATcc < 2:3785563/93‑1 (MQ=255)
aGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATcc < 1:3914731/93‑1 (MQ=255)
cAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCg < 2:2286721/93‑1 (MQ=255)
aaaGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTtcccgatcccga > 2:4422786/1‑93 (MQ=255)
aaaGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTtcccgatcccga > 2:4303827/1‑93 (MQ=255)
aaGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGac > 1:3560684/1‑93 (MQ=255)
gCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGacac < 1:2259838/93‑1 (MQ=255)
gCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGacac > 1:1642796/1‑93 (MQ=255)
cTTGATCATCTGCGGCTGGTGTCTTTAGGTATTCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGCTTCCCGATACCGACAcc > 1:1863327/1‑93 (MQ=255)
cTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACAcc > 2:2924301/1‑93 (MQ=255)
gATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCGCGACACCGGc > 1:1541294/1‑93 (MQ=255)
gATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGc > 2:1464649/1‑93 (MQ=255)
gATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGc > 1:3443664/1‑93 (MQ=255)
atcatcTGCGTCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCa < 1:605556/93‑1 (MQ=255)
atcatcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGATCATTATGGCTTACGCATCTGGTTTCCCGATCTCGAAACCGGcg > 2:628690/1‑92 (MQ=255)
tcatcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAg < 2:3293112/93‑1 (MQ=255)
atcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTa < 1:31357/93‑1 (MQ=255)
atcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTa > 2:3256042/1‑93 (MQ=255)
tcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAt > 1:3479538/1‑93 (MQ=255)
tcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAt > 2:3025961/1‑93 (MQ=255)
cTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAtt < 1:823756/93‑1 (MQ=255)
gCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAtttt > 2:4051306/1‑93 (MQ=255)
gCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAtttt < 1:1533638/93‑1 (MQ=255)
gCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAtttt < 1:3886885/93‑1 (MQ=255)
cGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTg < 2:3155432/93‑1 (MQ=255)
ggCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGc < 1:3131857/93‑1 (MQ=255)
ggCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGc > 1:562088/1‑93 (MQ=255)
gCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCa < 2:1933171/93‑1 (MQ=255)
cTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTTCCGATCCCGACACCGGGAGttttttttac > 2:4255524/1‑89 (MQ=255)
gtgtCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCtt < 1:426433/93‑1 (MQ=255)
gtgtCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCtt > 2:158647/1‑93 (MQ=255)
tgtCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCttt > 2:2956821/1‑93 (MQ=255)
gtCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTc < 1:2168817/93‑1 (MQ=255)
gtCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTc > 2:3207921/1‑93 (MQ=255)
tCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTcg < 1:4010567/93‑1 (MQ=255)
tttAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTcgcg > 1:4153441/1‑93 (MQ=255)
tttAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTcgcg > 2:4193242/1‑93 (MQ=255)
tttAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTcgcg > 1:2545722/1‑93 (MQ=255)
tttAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTcgcg > 2:2370668/1‑93 (MQ=255)
tttAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTcgcg > 1:503811/1‑93 (MQ=255)
ggTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGt > 1:2675504/1‑93 (MQ=255)
ggTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGt > 2:3494099/1‑93 (MQ=255)
ggTAAGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGt > 1:2369379/1‑93 (MQ=255)
gTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGtt < 1:289166/93‑1 (MQ=255)
gTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGtt < 2:3488374/93‑1 (MQ=255)
tATGCGTTGTTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTg > 2:3143576/1‑93 (MQ=255)
tATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTg < 1:3766892/93‑1 (MQ=255)
aTGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTgg > 1:1756485/1‑93 (MQ=255)
gCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGcc < 2:3453243/93‑1 (MQ=255)
gTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCcgc > 1:4156408/1‑93 (MQ=255)
gCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGaa < 2:595480/93‑1 (MQ=255)
tGGCAGGATATTGAGCATTATGGTGGACGCATCTGGTGTCCCGAACCCGACTCCGGCAGGATTTTGCATCTTTCGCGCAGTCGTTCGCGAAGt > 2:4226078/1‑93 (MQ=255)
ggCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTg < 2:4588076/93‑1 (MQ=255)
ggCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTg > 1:2827124/1‑93 (MQ=255)
gCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGa > 2:1570964/1‑93 (MQ=255)
aGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAAc < 1:3035307/93‑1 (MQ=255)
gATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAg < 2:4514116/93‑1 (MQ=255)
tatTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGa < 1:4534620/93‑1 (MQ=255)
tatTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGa > 2:1044258/1‑93 (MQ=255)
atTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGaa > 2:2606635/1‑93 (MQ=255)
aGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACt > 2:1957311/1‑93 (MQ=255)
cATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCa < 2:3777832/93‑1 (MQ=255)
aTTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAc < 1:4203667/93‑1 (MQ=255)
aTTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAc > 2:3684749/1‑93 (MQ=255)
ttATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAcc > 2:4383110/1‑93 (MQ=255)
ttATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAcc > 1:1978188/1‑93 (MQ=255)
ttATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAcc > 2:2969006/1‑93 (MQ=255)
atataGTTCACGTATCTGGTTGCCCTATCCCGACACCGGCAGTATTTTGCATCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAcc < 2:1713574/92‑1 (MQ=255)
tATGGTTTACGCATCTGGCTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAATTGAACAGGAAAACTCACCg > 1:4686810/1‑93 (MQ=255)
tGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGc < 2:3910559/93‑1 (MQ=255)
gTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAg < 1:3416970/93‑1 (MQ=255)
tttACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGc > 1:3997107/1‑93 (MQ=255)
tttACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGc < 1:4249500/93‑1 (MQ=255)
tttACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGc > 2:131779/1‑93 (MQ=255)
tttACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGc < 2:3066929/93‑1 (MQ=255)
tttACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGc < 1:3855782/93‑1 (MQ=255)
tACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTa < 1:4551575/93‑1 (MQ=255)
tACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTa < 1:1393408/93‑1 (MQ=255)
aCGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAc > 2:451055/1‑93 (MQ=255)
aCGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAc < 2:3429604/93‑1 (MQ=255)
aCGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAc > 2:4269491/1‑93 (MQ=255)
aCGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAc > 1:1167618/1‑93 (MQ=255)
cGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAcg < 1:2852175/93‑1 (MQ=255)
gCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAcgc > 1:2731433/1‑93 (MQ=255)
gCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAcgc > 1:663462/1‑93 (MQ=255)
ctCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGt < 2:124064/92‑1 (MQ=255)
tCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTc > 1:2463354/1‑93 (MQ=255)
tGGTTTCTCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGGAGTGACCAGGAAAACTCACCGGCAGCTACGCGTCgg > 1:1001381/1‑93 (MQ=255)
ggTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGc < 1:2705709/93‑1 (MQ=255)
ggTTTCCCGATCCCGACACCGGCAGTATTTCGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGc < 1:601095/93‑1 (MQ=255)
gTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCt < 2:4269547/93‑1 (MQ=255)
gTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCt > 2:3497065/1‑93 (MQ=255)
gTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCt < 1:3870122/93‑1 (MQ=255)
|
GGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCT > NC_000913/2208107‑2208285
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTT > NC_000913/2208105‑2208289
|
CCGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCC > SRR4302544.876606/1‑94 (MQ=60)
CGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCC > SRR4302544.2202916/1‑94 (MQ=60)
AGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCC < SRR4302544.3953620/94‑1 (MQ=60)
AAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGAC > SRR4302544.3594820/1‑94 (MQ=60)
AGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACAC > SRR4302544.1658993/1‑94 (MQ=60)
GCTTGATCATCTGCGGCTGGTGTCTTTAGGTATTCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGCTTCCCGATACCGACACC > SRR4302544.1881334/1‑94 (MQ=60)
GCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACC < SRR4302544.2281095/94‑1 (MQ=60)
CTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCG < SRR4302544.594355/94‑1 (MQ=60)
TGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCGCGACACCGGC > SRR4302544.1556621/1‑94 (MQ=60)
TGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGC > SRR4302544.3476573/1‑94 (MQ=60)
ATCATCTGCGTCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAG < SRR4302544.611500/94‑1 (MQ=60)
ATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAT > SRR4302544.3512716/1‑94 (MQ=60)
ATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAT < SRR4302544.31661/94‑1 (MQ=60)
CTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTT < SRR4302544.831821/94‑1 (MQ=60)
GCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTG < SRR4302544.1548869/94‑1 (MQ=60)
GCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTG < SRR4302544.3925493/94‑1 (MQ=60)
CGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGC > SRR4302544.567585/1‑94 (MQ=60)
GGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCA < SRR4302544.3161611/94‑1 (MQ=60)
GGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTT < SRR4302544.2520558/94‑1 (MQ=60)
GTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTT < SRR4302544.430769/94‑1 (MQ=60)
GTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTT < SRR4302544.406871/94‑1 (MQ=60)
GTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCG < SRR4302544.2189390/94‑1 (MQ=60)
TCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGC < SRR4302544.4050463/94‑1 (MQ=60)
CTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCG > SRR4302544.2570168/1‑94 (MQ=60)
CTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCG > SRR4302544.508763/1‑94 (MQ=60)
CTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCG > SRR4302544.4194577/1‑94 (MQ=60)
CTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTAACTCATCTGGTTTCCCGACTCCGACACCGGCAGTATTTTGCACCTTTCcac > SRR4302544.2701182/1‑91 (MQ=60)
AGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGT > SRR4302544.2701148/1‑94 (MQ=60)
AGGTAAGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGT > SRR4302544.2391800/1‑94 (MQ=60)
GTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTG < SRR4302544.292163/94‑1 (MQ=60)
GTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGATG > SRR4302544.4225639/1‑94 (MQ=60)
TATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGG < SRR4302544.3804249/94‑1 (MQ=60)
TATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGG > SRR4302544.1773676/1‑94 (MQ=60)
CGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGC > SRR4302544.3870665/1‑94 (MQ=60)
CGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGC > SRR4302544.4197575/1‑94 (MQ=60)
CGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGC > SRR4302544.4780153/1‑94 (MQ=60)
GCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAG > SRR4302544.2858749/1‑94 (MQ=60)
TGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTG > SRR4302544.2854441/1‑94 (MQ=60)
GGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGA > SRR4302544.199399/1‑94 (MQ=60)
AGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACA < SRR4302544.3064371/94‑1 (MQ=60)
TATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAA < SRR4302544.4579963/94‑1 (MQ=60)
TATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAA > SRR4302544.3952611/1‑94 (MQ=60)
TATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAA < SRR4302544.1417639/94‑1 (MQ=60)
ATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACC > SRR4302544.1997408/1‑94 (MQ=60)
ATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACC < SRR4302544.4245759/94‑1 (MQ=60)
ATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGCAAAACTCACC > SRR4302544.1718166/1‑94 (MQ=60)
TTATGGTTTACGCATCTGGCTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAATTGAACAGGAAAACTCACCG > SRR4302544.4733134/1‑94 (MQ=60)
GTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGC > SRR4302544.4036893/1‑94 (MQ=60)
GTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGC < SRR4302544.3449631/94‑1 (MQ=60)
TTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCT < SRR4302544.3894063/94‑1 (MQ=60)
TTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCT < SRR4302544.4292827/94‑1 (MQ=60)
TACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAC < SRR4302544.4597013/94‑1 (MQ=60)
TACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAC > SRR4302544.1179260/1‑94 (MQ=60)
TACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAC > SRR4302544.4501200/1‑94 (MQ=60)
TACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAC < SRR4302544.1407316/94‑1 (MQ=60)
ACGCATCTGGTTTCCCGATCCCGACACCGGCAGGATTTTGCACCTTTCGCGCAGGTAGTCGCGAAGTGAACAGGAAAACTCACCGGCAGgcaca > SRR4302544.3771774/1‑89 (MQ=60)
CGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGC > SRR4302544.670014/1‑94 (MQ=60)
CGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGC > SRR4302544.2757760/1‑94 (MQ=60)
CGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGC < SRR4302544.2879733/94‑1 (MQ=60)
CATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTGCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGT < SRR4302544.3362887/94‑1 (MQ=60)
ATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTC < SRR4302544.824436/94‑1 (MQ=60)
ATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTC > SRR4302544.2486880/1‑94 (MQ=60)
TCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCG > SRR4302544.2244523/1‑94 (MQ=60)
CTGGTTTCTCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGGAGTGACCAGGAAAACTCACCGGCAGCTACGCGTCGG > SRR4302544.1011310/1‑94 (MQ=60)
TGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGC > SRR4302544.3548094/1‑94 (MQ=60)
GGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCT < SRR4302544.2731729/94‑1 (MQ=60)
GGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCT < SRR4302544.3079859/94‑1 (MQ=60)
GGTTTCCCGATCCCGACACCGGCAGTATTTCGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCT < SRR4302544.606988/94‑1 (MQ=60)
GTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTG < SRR4302544.3908556/94‑1 (MQ=60)
TTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTT > SRR4302544.1939798/1‑94 (MQ=60)
TCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTT < SRR4302544.4323885/94‑1 (MQ=60)
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CCGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTT > NC_000913/2208105‑2208289
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
