Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,290,493 |
A→G |
N164N (AAT→AAC) |
dsbE ← |
disulfide oxidoreductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,290,493 | 0 | A | G | 96.9%
| 482.4
/ 3.1
| 159 | N164N (AAT→AAC) | dsbE | disulfide oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base A (2/3); new base G (72/82); total (74/85) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01 |
Only 100 of 162 total aligned reads displayed.
GCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCC > NC_000913/2290403‑2290582
|
tcagcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAg > 1:3725617/1‑93 (MQ=255)
agcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGAt < 2:2291842/93‑1 (MQ=255)
gcaCGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATc < 1:115753/93‑1 (MQ=255)
cGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGcc < 1:1695451/93‑1 (MQ=255)
gCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCCGACGCGAGGGTTCAGATCGccc > 1:3657847/1‑93 (MQ=255)
gCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGccc > 1:1581939/1‑93 (MQ=255)
cccAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCg < 2:2815904/93‑1 (MQ=255)
cAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCCGACGCGAGGGTTCCGCTCGCCCGCa > 1:3030147/1‑93 (MQ=255)
cAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCa > 1:3030148/1‑93 (MQ=255)
cAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCa > 1:1623261/1‑93 (MQ=255)
aaTAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCAt < 1:2524296/93‑1 (MQ=255)
aaTAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCAt > 2:1731670/1‑93 (MQ=255)
tAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATgg > 1:1620804/1‑93 (MQ=255)
aaaaaaCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATgg < 1:1663455/92‑1 (MQ=255)
aaaaCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCg > 2:4412779/1‑93 (MQ=255)
aaaCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAGATCGCCACCATGGCGa > 1:3954757/1‑93 (MQ=255)
aaCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGAt < 2:1403374/93‑1 (MQ=255)
aCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATa > 2:1209188/1‑93 (MQ=255)
aCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATa > 2:2145381/1‑93 (MQ=255)
aCCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAGATCGCCCGCATGGCGATa > 2:1122009/1‑93 (MQ=255)
cTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGc > 2:4686709/1‑93 (MQ=255)
aTTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGaa < 1:4289220/93‑1 (MQ=255)
aTTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGaa < 1:1374017/93‑1 (MQ=255)
ttGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAat > 2:4391204/1‑93 (MQ=255)
ttGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAat > 2:2442899/1‑93 (MQ=255)
gtgCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAatga < 2:1954067/93‑1 (MQ=255)
ggCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAatgat < 1:4115528/92‑1 (MQ=255)
cctcctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgt < 1:714299/93‑1 (MQ=255)
cctcctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgt < 2:1725951/93‑1 (MQ=255)
ctcctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgtt < 1:648504/93‑1 (MQ=255)
ctcctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgtt < 2:639194/93‑1 (MQ=255)
ctcctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgtt < 1:1713195/93‑1 (MQ=255)
ctcctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgtt < 2:1631860/93‑1 (MQ=255)
ctcccTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgtt < 1:1233488/93‑1 (MQ=255)
tcctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgttg > 2:2341484/1‑93 (MQ=255)
cctTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgttgc > 1:1278111/1‑93 (MQ=255)
ttACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGAtgccgttgccg < 2:1381447/93‑1 (MQ=255)
cTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCa > 2:2681062/1‑93 (MQ=255)
tGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCaa < 2:742674/93‑1 (MQ=255)
gatATTTCCCCCACATCGCCTTGACCTCTTCTGCCCAGACGCGAGGGTTCAGATCGCCCACATGGCGATAGCGAATGATGCCGTTGCCGTCaa < 2:2049346/91‑1 (MQ=255)
gTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAAt < 1:1078613/93‑1 (MQ=255)
gTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTACCGTCAAt > 2:1189285/1‑93 (MQ=255)
tATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATa < 1:1705778/93‑1 (MQ=255)
tATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATa > 1:4168793/1‑93 (MQ=255)
tATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATa < 1:137119/93‑1 (MQ=255)
tttcctcCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATaa < 2:3425825/89‑1 (MQ=255)
aTTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCTCATGGCGATAGCGAATGATGCCGTTGCCGTCAATaa < 1:2894617/93‑1 (MQ=255)
aTTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATaa < 1:1919525/93‑1 (MQ=255)
aTTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATaa < 1:26670/93‑1 (MQ=255)
aTTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATaa < 1:1338248/93‑1 (MQ=255)
aTTGCTCCCGCAGCGGCTTGAGCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATaa < 2:386185/93‑1 (MQ=255)
tctcCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGaa < 1:3560028/93‑1 (MQ=255)
tcCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAAc < 1:4372164/93‑1 (MQ=255)
ccccACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAAc < 2:1227963/92‑1 (MQ=255)
cccACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACg > 2:336812/1‑93 (MQ=255)
ccACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGt < 1:2520851/93‑1 (MQ=255)
ccACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGt > 1:3758075/1‑93 (MQ=255)
cacaGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGtt < 2:2428576/93‑1 (MQ=255)
cacaGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGtt > 1:4449942/1‑93 (MQ=255)
cacaGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGtt < 1:4150458/93‑1 (MQ=255)
acaGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGttt > 1:1936779/1‑93 (MQ=255)
acaGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGttt > 2:571303/1‑93 (MQ=255)
acaGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGttt > 2:911409/1‑93 (MQ=255)
aaGCGGCTTCATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTc < 2:3650919/92‑1 (MQ=255)
aGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCt < 1:4708144/93‑1 (MQ=255)
gCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTg < 2:4440883/93‑1 (MQ=255)
gCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTg < 1:2628545/93‑1 (MQ=255)
gCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTg < 1:1072243/93‑1 (MQ=255)
cGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTgg < 1:3291019/93‑1 (MQ=255)
ggCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGgc > 2:4248513/1‑93 (MQ=255)
gATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGcc < 2:2575013/93‑1 (MQ=255)
gATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGcc > 1:4035023/1‑93 (MQ=255)
aTCTCTTCTTCCCAGACGCGCGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGATGCCGTCACTAAGAAACGTTTCTGGCGCGCCa > 1:3650850/1‑93 (MQ=255)
aTCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCa > 1:532996/1‑93 (MQ=255)
aTCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCa > 1:2105914/1‑93 (MQ=255)
tctcTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAt > 2:1187434/1‑93 (MQ=255)
tctcTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAt < 1:1684236/93‑1 (MQ=255)
tctcTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAt < 2:180497/93‑1 (MQ=255)
ctctTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCAtg > 1:1386639/1‑92 (MQ=255)
tcttctTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAg < 1:2632351/93‑1 (MQ=255)
ttcttcCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGac > 2:2999222/1‑93 (MQ=255)
tcttcCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGaca > 1:3804291/1‑93 (MQ=255)
tcttcCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGaca < 1:4338396/93‑1 (MQ=255)
tcttcCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGACAGCGCATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGaca > 1:3804292/1‑93 (MQ=255)
tttcCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGTCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGaccc < 1:3728630/92‑3 (MQ=255)
cttcCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGacac < 2:3761194/93‑1 (MQ=255)
tcCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCg < 1:875581/93‑1 (MQ=255)
ccAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCgag > 1:2931447/1‑93 (MQ=255)
ccAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCgag > 1:3516746/1‑93 (MQ=255)
ccAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCgag > 2:4067884/1‑93 (MQ=255)
cAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCgaga < 2:810083/93‑1 (MQ=255)
aGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGAt > 2:3989577/1‑93 (MQ=255)
aGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGAt > 2:4670492/1‑93 (MQ=255)
aGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGAt < 2:2402557/93‑1 (MQ=255)
aGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATCCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGAt > 2:1326651/1‑93 (MQ=255)
aCGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATcc < 1:3516272/93‑1 (MQ=255)
aCGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATcc < 2:2816645/93‑1 (MQ=255)
gAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGcc > 1:646843/1‑93 (MQ=255)
gAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGcc > 2:943730/1‑93 (MQ=255)
aGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGccc > 1:1935237/1‑93 (MQ=255)
|
GCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCC > NC_000913/2290403‑2290582
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTAAC > NC_000913/2290403‑2290586
|
GCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTC < SRR4302544.1387179/94‑1 (MQ=60)
CATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCA < SRR4302544.164636/94‑1 (MQ=60)
ATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAG > SRR4302544.3762668/1‑94 (MQ=60)
TCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGA > SRR4302544.365605/1‑94 (MQ=60)
GCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCG < SRR4302544.116808/94‑1 (MQ=60)
CACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGC > SRR4302544.3741634/1‑94 (MQ=60)
CGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCCGACGCGAGGGTTCAGATCGCCC > SRR4302544.3694335/1‑94 (MQ=60)
CGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCC > SRR4302544.1597572/1‑94 (MQ=60)
CGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCC < SRR4302544.1712177/94‑1 (MQ=60)
CCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCCGACGCGAGGGTTCCGCTCGCCCGCA > SRR4302544.3059180/1‑94 (MQ=60)
CCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCA > SRR4302544.4343018/1‑94 (MQ=60)
CCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCA > SRR4302544.3059181/1‑94 (MQ=60)
CCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCA > SRR4302544.1639255/1‑94 (MQ=60)
AATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATG < SRR4302544.2548553/94‑1 (MQ=60)
ATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGG > SRR4302544.1636767/1‑94 (MQ=60)
AAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGC < SRR4302544.1679835/94‑1 (MQ=60)
AAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATGGCCCGCATGGCG > SRR4302544.1628408/1‑94 (MQ=60)
AAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGGTCAGATCGCCACCATGGCGA > SRR4302544.3994072/1‑94 (MQ=60)
AACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATA > SRR4302544.4163832/1‑94 (MQ=60)
CTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCG < SRR4302544.2724426/94‑1 (MQ=60)
TCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGA < SRR4302544.3576973/94‑1 (MQ=60)
CATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAA > SRR4302544.1107682/1‑94 (MQ=60)
ATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAAT < SRR4302544.1387711/94‑1 (MQ=60)
ATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAAT < SRR4302544.4333028/94‑1 (MQ=60)
TGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATG > SRR4302544.3507687/1‑94 (MQ=60)
GGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATG < SRR4302544.4156410/94‑1 (MQ=60)
CGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCC > SRR4302544.4321499/1‑94 (MQ=60)
CCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTT < SRR4302544.721367/94‑1 (MQ=60)
CCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTT < SRR4302544.3920628/94‑1 (MQ=60)
CTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTG < SRR4302544.654911/94‑1 (MQ=60)
CTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTG < SRR4302544.654912/94‑1 (MQ=60)
CTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTG < SRR4302544.1730051/94‑1 (MQ=60)
CTCCCTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTG < SRR4302544.1245686/94‑1 (MQ=60)
TCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGC > SRR4302544.1290696/1‑94 (MQ=60)
CCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCC < SRR4302544.4018288/94‑1 (MQ=60)
TACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTC > SRR4302544.378239/1‑94 (MQ=60)
GTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATA > SRR4302544.4210093/1‑94 (MQ=60)
GTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATA < SRR4302544.1089336/94‑1 (MQ=60)
TATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAA < SRR4302544.1722595/94‑1 (MQ=60)
TATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAA < SRR4302544.138414/94‑1 (MQ=60)
ATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCTCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAG < SRR4302544.2922500/94‑1 (MQ=60)
ATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAG < SRR4302544.26924/94‑1 (MQ=60)
ATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAG < SRR4302544.1351458/94‑1 (MQ=60)
ATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAG < SRR4302544.1938074/94‑1 (MQ=60)
ATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAG < SRR4302544.2198364/94‑1 (MQ=60)
ATTTCTCCCACAGCGGCTTGATCTCTTCTGCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAG < SRR4302544.1816675/94‑1 (MQ=60)
TTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAA > SRR4302544.267905/1‑94 (MQ=60)
TCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAA < SRR4302544.3594159/94‑1 (MQ=60)
CTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAAC > SRR4302544.4440073/1‑94 (MQ=60)
CTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGACGTCAATAAGAAAC > SRR4302544.3308768/1‑94 (MQ=60)
TCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACG > SRR4302544.1714722/1‑94 (MQ=60)
TCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACG < SRR4302544.4416490/94‑1 (MQ=60)
CCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGT > SRR4302544.3795377/1‑94 (MQ=60)
CCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTT < SRR4302544.2545069/94‑1 (MQ=60)
CCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTT < SRR4302544.125258/94‑1 (MQ=60)
CCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTT > SRR4302544.4494774/1‑94 (MQ=60)
CACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTT < SRR4302544.4191557/94‑1 (MQ=60)
CACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTT > SRR4302544.1955527/1‑94 (MQ=60)
AGCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTG < SRR4302544.4754661/94‑1 (MQ=60)
GCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGG < SRR4302544.2653745/94‑1 (MQ=60)
GCGGCTTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGG < SRR4302544.1082904/94‑1 (MQ=60)
CGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGC < SRR4302544.3322375/94‑1 (MQ=60)
TTGATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGC < SRR4302544.1333292/94‑1 (MQ=60)
TGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCC > SRR4302544.4075213/1‑94 (MQ=60)
GATCTCTTCTTCCCAGACGCGCGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGATGCCGTCACTAAGAAACGTTTCTGGCGCGCCA > SRR4302544.3687277/1‑94 (MQ=60)
GATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCA > SRR4302544.381043/1‑94 (MQ=60)
GATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCA > SRR4302544.2126177/1‑94 (MQ=60)
GATCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCA > SRR4302544.538277/1‑94 (MQ=60)
TCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATG > SRR4302544.1400482/1‑94 (MQ=60)
TCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATA < SRR4302544.1700832/94‑1 (MQ=60)
TCTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATA < SRR4302544.2646305/94‑1 (MQ=60)
CTCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAG > SRR4302544.841486/1‑94 (MQ=60)
TCTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGA < SRR4302544.2657582/94‑1 (MQ=60)
CTTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGAC < SRR4302544.2074511/94‑1 (MQ=60)
TTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACA > SRR4302544.3841989/1‑94 (MQ=60)
TTCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGACAGCGCATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACA > SRR4302544.3841990/1‑94 (MQ=60)
TCTTCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACAC < SRR4302544.4382547/94‑1 (MQ=60)
TTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGTCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACCCC < SRR4302544.3765702/94‑1 (MQ=60)
CGTCCCAGACGCGAGGGTGCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACC < SRR4302544.554199/94‑1 (MQ=60)
TCCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGA < SRR4302544.884268/94‑1 (MQ=60)
CCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAG > SRR4302544.2959616/1‑94 (MQ=60)
CCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAG > SRR4302544.456994/1‑94 (MQ=60)
CCCAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAG > SRR4302544.3550322/1‑94 (MQ=60)
CCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAG < SRR4302544.1572435/94‑1 (MQ=60)
CAGACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGAT > SRR4302544.1692234/1‑94 (MQ=60)
GACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCC < SRR4302544.2976018/94‑1 (MQ=60)
ACGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCA < SRR4302544.3549845/94‑1 (MQ=60)
CGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAG > SRR4302544.485315/1‑94 (MQ=60)
CGCGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAG < SRR4302544.1943512/94‑1 (MQ=60)
CGAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCC > SRR4302544.653231/1‑94 (MQ=60)
GAGGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCC > SRR4302544.1953968/1‑94 (MQ=60)
GGGTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTA > SRR4302544.3264583/1‑94 (MQ=60)
GTTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTAAC > SRR4302544.2886064/1‑94 (MQ=60)
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GCATCAGCACGCCCAATAAAAACCTCATTGTGCGGCCTCCTTACTGTATTTCTCCCACAGCGGCTTGATCTCTTCTTCCCAGACGCGAGGATTCAGATCGCCCGCATGGCGATAGCGAATGATGCCGTTGCCGTCAATAAGAAACGTTTCTGGCGCGCCATAGACACCGAGATCCAGCCCTAAC > NC_000913/2290403‑2290586
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
