Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,331,739 |
A→G |
intergenic (‑3922/+617) |
b2226 ← / ← b2229 |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,331,739 | 0 | A | G | 99.1%
| 346.2
/ ‑4.5
| 108 | intergenic (‑3922/+617) | b2226/b2229 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (55/52); total (56/52) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.73e-01 |
Only 100 of 113 total aligned reads displayed.
GGTATCGGAAACAAACACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGAATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGTTTAGCCTGC > NC_000913/2331649‑2331829
|
ggTATCGGAAACAAACACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGCCCCGGCTCTTGTTGGCCGAGAGGAat > 1:1238452/1‑93 (MQ=255)
gTATCGGAAACAAACACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGata < 2:3628212/93‑1 (MQ=255)
tATCGGAAACAAACACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGatat > 1:1311801/1‑93 (MQ=255)
cGGAAACAAACACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATaaa < 1:68335/93‑1 (MQ=255)
ggAAACAAACACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAAt > 2:2543139/1‑93 (MQ=255)
aaacaaacACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGt < 1:1947405/93‑1 (MQ=255)
aaacaaacACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGt < 2:1771322/93‑1 (MQ=255)
aacaaacaCCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGtt < 1:4626305/93‑1 (MQ=255)
aacaaacaCCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGtt < 2:3423015/93‑1 (MQ=255)
aacaCCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTAccc > 2:1300075/1‑93 (MQ=255)
aacaCCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTAccc < 2:4470761/93‑1 (MQ=255)
cccaccGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGc < 1:2950906/92‑1 (MQ=255)
accaccGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGc > 2:1586301/1‑93 (MQ=255)
accaccGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGc > 1:1262199/1‑93 (MQ=255)
ccaccGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCt > 2:2207491/1‑93 (MQ=255)
accGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTgc > 2:191702/1‑93 (MQ=255)
cgtcgtCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTgcgg < 1:1619855/93‑1 (MQ=255)
cgtcgtCCCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTgcgg < 1:3214953/93‑1 (MQ=255)
gtcgtcGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTgcggc > 2:4049786/1‑93 (MQ=255)
ccgtcgCCCGATACCCACCACCCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTgcggcg < 1:482450/92‑1 (MQ=255)
cgtcgCCCGATACCCACCAACCATCGCCTCGACGCGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCga > 2:420065/1‑93 (MQ=255)
cgtcgCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCga < 1:3485096/93‑1 (MQ=255)
gtcgCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCgag > 2:1112066/1‑93 (MQ=255)
cgCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGAt < 2:1084930/93‑1 (MQ=255)
gCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATg > 1:170527/1‑93 (MQ=255)
gCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATg > 1:950973/1‑93 (MQ=255)
ccGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGaa < 2:4614518/93‑1 (MQ=255)
ccGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGaa > 1:248721/1‑93 (MQ=255)
ccGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGaa < 1:2706421/93‑1 (MQ=255)
ccGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGaa > 2:3756936/1‑93 (MQ=255)
ccGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGaa > 2:425103/1‑93 (MQ=255)
cGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGaaa < 1:103965/93‑1 (MQ=255)
gATACCCACCTTCCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAAt < 2:3071121/93‑1 (MQ=255)
gATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAAt > 2:1303847/1‑93 (MQ=255)
gATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAAt > 2:4697850/1‑93 (MQ=255)
aTACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAAtt > 1:3873432/1‑93 (MQ=255)
aTACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGAGATAAATGTTACCCGGCTGCAGCGAGATGAAAtt > 2:2765528/1‑93 (MQ=255)
aCCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGc < 1:820555/93‑1 (MQ=255)
cccACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCt < 1:3440235/93‑1 (MQ=255)
ccaccaACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTg < 1:2202925/93‑1 (MQ=255)
ccaccaACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTg > 1:2383359/1‑93 (MQ=255)
caccaACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTgg > 1:4424323/1‑93 (MQ=255)
caccaACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTgg > 1:927310/1‑93 (MQ=255)
cccaaccaTCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGa < 1:3730670/92‑1 (MQ=255)
accaaccaTCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGa < 1:2864010/93‑1 (MQ=255)
caaccaTCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATg > 2:3662386/1‑93 (MQ=255)
aaccaTCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATgc < 1:1510380/93‑1 (MQ=255)
accaTCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATgcg < 1:3391595/93‑1 (MQ=255)
accaTCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATgcg > 1:1815781/1‑93 (MQ=255)
ccaTCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATgcgc < 2:2641880/93‑1 (MQ=255)
caTCTCCCCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGcc < 1:2286298/93‑1 (MQ=255)
caTCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGcc < 2:4122560/93‑1 (MQ=255)
caTCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGcc > 2:2915359/1‑93 (MQ=255)
ctCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCt < 1:994806/92‑1 (MQ=255)
aTCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCt < 2:2017093/93‑1 (MQ=255)
tCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCtt > 1:246820/1‑93 (MQ=255)
cGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTc < 2:2454924/93‑1 (MQ=255)
gCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTcc > 1:4438954/1‑93 (MQ=255)
ccTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCa > 2:1155057/1‑93 (MQ=255)
gacgaGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGttt > 2:637169/1‑93 (MQ=255)
acgaGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGtttt > 2:2116065/1‑93 (MQ=255)
acgaGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGtttt > 1:2080023/1‑93 (MQ=255)
gaGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTAc < 2:1171189/93‑1 (MQ=255)
gaGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTAc < 1:4486535/93‑1 (MQ=255)
aGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTAcc > 2:3310903/1‑93 (MQ=255)
aGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTAcc > 2:4330731/1‑93 (MQ=255)
aGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTAcc < 1:690272/93‑1 (MQ=255)
gTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGGAATTGCTGGATGCGCCTTCCAGTTTTAcccc > 1:2400536/1‑93 (MQ=255)
tACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCt < 1:1247627/93‑1 (MQ=255)
tACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCt < 1:3780051/93‑1 (MQ=255)
aCAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCtt < 1:1892166/93‑1 (MQ=255)
aCAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCtt < 2:2030837/93‑1 (MQ=255)
cAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGGGCCTTCCAGTTTTACCCCttc > 2:3927105/1‑92 (MQ=255)
cAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTtg < 1:4091703/93‑1 (MQ=255)
aGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTtgc < 2:3210881/93‑1 (MQ=255)
gTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTtgct > 2:713942/1‑93 (MQ=255)
gTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTtgct < 1:1567574/93‑1 (MQ=255)
gTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTtgct > 1:2804431/1‑93 (MQ=255)
cccGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTtgctgc < 2:2951499/93‑1 (MQ=255)
cccGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTtgctgc < 1:2874146/93‑1 (MQ=255)
ccGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCg > 1:2341205/1‑93 (MQ=255)
ggCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGc > 2:1461809/1‑93 (MQ=255)
ctctTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTc > 2:3934884/1‑93 (MQ=255)
tctTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCg > 1:2914622/1‑93 (MQ=255)
tctTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCg > 2:3450061/1‑93 (MQ=255)
tctTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCg > 2:150885/1‑93 (MQ=255)
tctTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCg > 2:2739223/1‑93 (MQ=255)
ttgttgGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCgga > 2:1797510/1‑91 (MQ=255)
ttgttgGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGaa < 1:1631095/93‑1 (MQ=255)
ttgttgGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGaa > 1:980654/1‑93 (MQ=255)
ttgttgGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGaa > 2:1910886/1‑93 (MQ=255)
gttgGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACg < 1:1968222/93‑1 (MQ=255)
tgGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGt > 1:1012106/1‑93 (MQ=255)
cGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGTTTAg > 2:3494077/1‑93 (MQ=255)
agagGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGTTTAGcc < 1:4488661/93‑1 (MQ=255)
gagGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGTTTAGGCt > 2:3041913/1‑93 (MQ=255)
gagGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGTTTAGCCt > 1:3017623/1‑93 (MQ=255)
gagGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGGTTAGCCt > 2:1334066/1‑93 (MQ=255)
agGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGGTTAGCCTg > 1:3148217/1‑93 (MQ=255)
ggAATATAAATGTTACCCGGCTGCGGCGAGATGGAATTGCTGGATGCGCCTTCCAGTTATACCCCTTGCTGCGGCTCGAACGGTTTAGCCTGc > 2:2367282/1‑93 (MQ=255)
|
GGTATCGGAAACAAACACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGAATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGTTTAGCCTGC > NC_000913/2331649‑2331829
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CACGGTATCGGAAACAAACACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGAATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGTTTAGCCTGCCA > NC_000913/2331646‑2331831
|
CACGGTATCGGAAACAAACACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGG < SRR4302544.4550001/94‑1 (MQ=60)
CACGGTATCGGAAACAAACACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGG > SRR4302544.343898/1‑94 (MQ=60)
CGGTATCGGAAACAAACACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGCCCCGGCTCTTGTTGGCCGAGAGGAAT > SRR4302544.1250688/1‑94 (MQ=60)
GGTATCGGAAACAAACACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATA > SRR4302544.3185107/1‑94 (MQ=60)
GTATCGGAAACAAACACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATAT > SRR4302544.1324700/1‑94 (MQ=60)
CGGAAACAAACACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAAT > SRR4302544.441611/1‑94 (MQ=60)
CGGAAACAAACACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAAT < SRR4302544.69010/94‑1 (MQ=60)
AAACAAACACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTT < SRR4302544.1966267/94‑1 (MQ=60)
AACAAACACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTA < SRR4302544.4672180/94‑1 (MQ=60)
CACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGC > SRR4302544.1274622/1‑94 (MQ=60)
CCCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCT < SRR4302544.2979254/94‑1 (MQ=60)
CGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGC < SRR4302544.1635814/94‑1 (MQ=60)
CGTCGTCCCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGC < SRR4302544.3245621/94‑1 (MQ=60)
CCGTCGCCCGATACCCACCACCCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGA < SRR4302544.487174/94‑1 (MQ=60)
CGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAG < SRR4302544.3518310/94‑1 (MQ=60)
CGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATG > SRR4302544.172208/1‑94 (MQ=60)
CGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATG > SRR4302544.960322/1‑94 (MQ=60)
CCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAA > SRR4302544.251330/1‑94 (MQ=60)
CCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAA < SRR4302544.2732444/94‑1 (MQ=60)
CGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAAT < SRR4302544.104921/94‑1 (MQ=60)
GATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATT > SRR4302544.3911899/1‑94 (MQ=60)
CATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATT < SRR4302544.213752/94‑1 (MQ=60)
ACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCT < SRR4302544.828581/94‑1 (MQ=60)
CCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTG < SRR4302544.3473121/94‑1 (MQ=60)
CCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTG > SRR4302544.2405927/1‑94 (MQ=60)
CCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGG > SRR4302544.4468959/1‑94 (MQ=60)
CCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGG < SRR4302544.2223676/94‑1 (MQ=60)
CCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGG > SRR4302544.936448/1‑94 (MQ=60)
CACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGA < SRR4302544.769497/94‑1 (MQ=60)
CCCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGAT < SRR4302544.3767761/94‑1 (MQ=60)
ACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGAT < SRR4302544.2891656/94‑1 (MQ=60)
AACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCG < SRR4302544.1525352/94‑1 (MQ=60)
AACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCG > SRR4302544.1833503/1‑94 (MQ=60)
ACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGC < SRR4302544.3424016/94‑1 (MQ=60)
CATCTCCCCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCT < SRR4302544.2307848/94‑1 (MQ=60)
CTCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTT < SRR4302544.1004646/94‑1 (MQ=60)
ATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTT > SRR4302544.249406/1‑94 (MQ=60)
CGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCC > SRR4302544.4483708/1‑94 (MQ=60)
GACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTT > SRR4302544.2100013/1‑94 (MQ=60)
GAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACC < SRR4302544.4531602/94‑1 (MQ=60)
AGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCC < SRR4302544.697151/94‑1 (MQ=60)
GGTACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGGAATTGCTGGATGCGCCTTCCAGTTTTACCCC > SRR4302544.2423314/1‑94 (MQ=60)
TACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTT < SRR4302544.3817491/94‑1 (MQ=60)
TACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTT < SRR4302544.1259915/94‑1 (MQ=60)
ACAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTG < SRR4302544.1910441/94‑1 (MQ=60)
CAGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGC < SRR4302544.4132397/94‑1 (MQ=60)
AGTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCT > SRR4302544.2831469/1‑94 (MQ=60)
GTCCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTG < SRR4302544.1583106/94‑1 (MQ=60)
CCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCG > SRR4302544.2363384/1‑94 (MQ=60)
CCCGGCTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCG < SRR4302544.2901887/94‑1 (MQ=60)
CTCTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCG > SRR4302544.2942649/1‑94 (MQ=60)
CTTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAA > SRR4302544.990266/1‑94 (MQ=60)
TTGTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAAC < SRR4302544.1647148/94‑1 (MQ=60)
GTTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGG < SRR4302544.1987338/94‑1 (MQ=60)
TTGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGT > SRR4302544.1022192/1‑94 (MQ=60)
TGGCCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGATTTACCCCTTGCTGCGGCTCccaacgct > SRR4302544.2572623/1‑86 (MQ=60)
CCGAGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGTTTAG < SRR4302544.1622201/94‑1 (MQ=60)
AGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGTTTAGCCT < SRR4302544.4533738/94‑1 (MQ=60)
AGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGTTTAGCCT > SRR4302544.3046553/1‑94 (MQ=60)
AGAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGTTTAGCCT > SRR4302544.2740079/1‑94 (MQ=60)
GAGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGGTTAGCCTG > SRR4302544.3178149/1‑94 (MQ=60)
AGGGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGTTTAGCCTGC > SRR4302544.2480405/1‑94 (MQ=60)
GGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGTTTAGCCTGCCC > SRR4302544.2912101/1‑94 (MQ=60)
GGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGTTTAGCCTGCCA > SRR4302544.429191/1‑94 (MQ=60)
GGATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGTTTAGCCTGCCA < SRR4302544.4118965/94‑1 (MQ=60)
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CACGGTATCGGAAACAAACACCACCGTCGTCGCCCGATACCCACCAACCATCGCCTCGACGAGGTACAGTCCCGGCTCTTGTTGGCCGAGAGGAATATAAATGTTACCCGGCTGCGGCGAGATGAAATTGCTGGATGCGCCTTCCAGTTTTACCCCTTGCTGCGGCTCGAACGGTTTAGCCTGCCA > NC_000913/2331646‑2331831
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
